Wall clock time and date at job start Mon Mar 30 2020 04:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47095 * 178.37692 * 3 2 1 5 5 C 1.37101 * 120.00286 * 263.97497 * 4 3 2 6 6 H 1.08001 * 120.00146 * 200.19451 * 5 4 3 7 7 C 1.38946 * 119.99679 * 20.19681 * 5 4 3 8 8 N 1.31408 * 120.00513 * 21.43394 * 7 5 4 9 9 Si 1.86805 * 119.99602 * 201.44039 * 7 5 4 10 10 H 1.48498 * 109.47242 * 89.99863 * 9 7 5 11 11 H 1.48504 * 109.46954 * 209.99442 * 9 7 5 12 12 H 1.48497 * 109.47218 * 329.99805 * 9 7 5 13 13 C 1.34784 * 119.99967 * 83.97445 * 4 3 2 14 14 O 1.21283 * 119.99929 * 179.97438 * 13 4 3 15 15 C 1.50696 * 119.99856 * 0.02562 * 13 4 3 16 16 H 1.09003 * 110.34168 * 320.65813 * 15 13 4 17 17 C 1.53751 * 110.19733 * 82.84306 * 15 13 4 18 18 C 1.51217 * 104.53252 * 119.22424 * 17 15 13 19 19 C 1.38174 * 130.98288 * 179.80301 * 18 17 15 20 20 C 1.38238 * 120.15172 * 179.97438 * 19 18 17 21 21 C 1.38301 * 119.83230 * 0.02562 * 20 19 18 22 22 C 1.37828 * 120.23030 * 359.97438 * 21 20 19 23 23 C 1.38597 * 108.54599 * 359.77859 * 18 17 15 24 24 N 1.39581 * 111.64533 * 359.97438 * 23 18 17 25 25 H 1.09007 * 109.47530 * 58.37962 * 3 2 1 26 26 H 1.08999 * 109.47407 * 298.38048 * 3 2 1 27 27 H 0.96999 * 120.00561 * 179.97438 * 8 7 5 28 28 H 1.08997 * 110.61048 * 0.36944 * 17 15 13 29 29 H 1.08996 * 110.33537 * 237.94453 * 17 15 13 30 30 H 1.08001 * 119.92636 * 359.97438 * 19 18 17 31 31 H 1.08006 * 120.08007 * 180.02562 * 20 19 18 32 32 H 1.07992 * 119.87990 * 180.02562 * 21 20 19 33 33 H 1.07993 * 119.85805 * 180.02562 * 22 21 20 34 34 H 0.97003 * 124.95511 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0956 1.3815 -0.0391 5 6 3.4414 1.9528 -1.2365 6 1 4.0900 2.8161 -1.2556 7 6 2.9573 1.4210 -2.4254 8 7 1.8751 0.6755 -2.4193 9 14 3.8450 1.7657 -4.0325 10 1 4.8678 0.7152 -4.2683 11 1 2.8661 1.7628 -5.1492 12 1 4.5068 3.0929 -3.9577 13 6 3.2044 2.0904 1.1021 14 8 3.6086 3.2334 1.0697 15 6 2.8249 1.4623 2.4183 16 1 1.9332 0.8464 2.3011 17 6 3.9912 0.6195 2.9602 18 6 4.3395 1.2609 4.2846 19 6 5.3010 0.9377 5.2228 20 6 5.4266 1.6901 6.3757 21 6 4.5867 2.7680 6.5888 22 6 3.6261 3.0942 5.6558 23 6 3.4932 2.3394 4.4882 24 7 2.5981 2.4987 3.4290 25 1 2.9716 -0.5380 -0.8751 26 1 2.9715 -0.4876 0.9041 27 1 1.5370 0.3046 -3.2493 28 1 4.8429 0.6619 2.2814 29 1 3.6753 -0.4130 3.1089 30 1 5.9558 0.0955 5.0551 31 1 6.1788 1.4367 7.1082 32 1 4.6844 3.3565 7.4890 33 1 2.9736 3.9374 5.8281 34 1 1.9215 3.1915 3.3726 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155673984.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:30 Heat of formation + Delta-G solvation = 44.184349 kcal Electronic energy + Delta-G solvation = -20213.163407 eV Core-core repulsion = 17111.688230 eV Total energy + Delta-G solvation = -3101.475178 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.41998 -38.58249 -36.10638 -35.48536 -34.34575 -32.12947 -31.61582 -29.24028 -28.58304 -27.48862 -25.26455 -23.10084 -21.80121 -21.06653 -19.30746 -18.00868 -17.19540 -16.94361 -16.30468 -15.48221 -15.39019 -14.94305 -14.22987 -13.93975 -13.65371 -13.48400 -13.18849 -13.09616 -12.58364 -12.46833 -12.18915 -11.91657 -11.88736 -11.57837 -11.39485 -11.29925 -11.16880 -10.70468 -10.60405 -10.45689 -10.40393 -10.16658 -9.32976 -8.68469 -8.56017 -8.11154 -7.06213 -6.56817 -4.08756 1.61978 1.83522 3.03701 3.18087 3.21802 3.33794 3.66958 3.73869 3.88957 4.03466 4.09525 4.64282 4.79182 4.84012 4.96804 5.11221 5.23271 5.25172 5.37227 5.49639 5.65897 5.73006 5.75469 5.91942 6.05039 6.12419 6.24372 6.37562 6.55438 6.72668 6.79477 6.93225 7.40010 7.40878 7.81855 8.09954 8.21139 8.65462 8.91736 9.10625 9.63699 10.48628 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.028598 B = 0.005146 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.867139 B = 5439.964415 C = 5808.946327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.242 3.758 3 C 0.219 3.781 4 N -0.439 5.439 5 C -0.316 4.316 6 H 0.108 0.892 7 C 0.034 3.966 8 N -0.875 5.875 9 Si 0.928 3.072 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.444 3.556 14 O -0.559 6.559 15 C 0.132 3.868 16 H 0.086 0.914 17 C -0.073 4.073 18 C -0.172 4.172 19 C -0.059 4.059 20 C -0.185 4.185 21 C -0.076 4.076 22 C -0.187 4.187 23 C 0.212 3.788 24 N -0.713 5.713 25 H 0.127 0.873 26 H 0.084 0.916 27 H 0.274 0.726 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.595 -3.734 11.716 13.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 C -0.076 4.076 3 C 0.092 3.908 4 N -0.160 5.160 5 C -0.443 4.443 6 H 0.126 0.874 7 C -0.170 4.170 8 N -0.513 5.513 9 Si 0.754 3.246 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.230 3.770 14 O -0.440 6.440 15 C 0.022 3.978 16 H 0.104 0.896 17 C -0.111 4.111 18 C -0.177 4.177 19 C -0.078 4.078 20 C -0.205 4.205 21 C -0.095 4.095 22 C -0.210 4.210 23 C 0.107 3.893 24 N -0.343 5.343 25 H 0.144 0.856 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 3.947 -3.293 11.365 12.473 hybrid contribution 0.257 0.467 -1.177 1.292 sum 4.204 -2.826 10.188 11.378 Atomic orbital electron populations 1.80903 1.13545 1.08257 1.12078 1.29272 0.95357 0.92682 0.90305 1.18758 0.81707 0.86783 1.03581 1.43625 1.56505 1.09486 1.06365 1.19710 1.28137 1.15442 0.80999 0.87444 1.25299 0.94753 0.97144 0.99822 1.69836 1.17950 1.34383 1.29111 0.85890 0.79007 0.79268 0.80420 1.20021 1.21071 1.19314 1.20465 0.84556 0.86898 0.85053 1.90562 1.49355 1.17773 1.86316 1.21348 0.98758 0.89089 0.88593 0.89608 1.20994 0.97516 0.98576 0.93978 1.19855 1.00291 0.99600 0.97921 1.20276 0.96031 0.98807 0.92687 1.20722 1.02511 0.98530 0.98749 1.20679 0.94387 0.96555 0.97877 1.20274 1.03569 1.02537 0.94613 1.18374 0.89191 0.93368 0.88374 1.44437 1.37494 1.34120 1.18212 0.85575 0.89785 0.91517 0.89087 0.89291 0.86437 0.86513 0.86436 0.86775 0.74872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.80 18.54 42.15 0.78 -10.02 16 2 C 0.24 5.15 12.50 -20.76 -0.26 4.89 16 3 C 0.22 4.13 4.81 -6.83 -0.03 4.10 16 4 N -0.44 -9.87 2.60 -117.94 -0.31 -10.18 16 5 C -0.32 -7.94 9.27 -14.93 -0.14 -8.08 16 6 H 0.11 2.88 7.43 -52.49 -0.39 2.49 16 7 C 0.03 0.82 4.84 -17.47 -0.08 0.74 16 8 N -0.87 -21.59 9.58 55.50 0.53 -21.06 16 9 Si 0.93 19.25 29.60 -169.99 -5.03 14.21 16 10 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 13 C 0.44 9.84 6.63 -10.98 -0.07 9.77 16 14 O -0.56 -14.64 16.25 5.55 0.09 -14.55 16 15 C 0.13 2.31 3.17 -68.68 -0.22 2.09 16 16 H 0.09 1.44 6.49 -51.93 -0.34 1.10 16 17 C -0.07 -1.07 5.56 -27.24 -0.15 -1.22 16 18 C -0.17 -2.61 6.23 -104.26 -0.65 -3.26 16 19 C -0.06 -0.77 10.04 -39.60 -0.40 -1.17 16 20 C -0.18 -2.23 10.06 -39.56 -0.40 -2.63 16 21 C -0.08 -0.94 10.02 -39.71 -0.40 -1.34 16 22 C -0.19 -2.64 10.07 -39.20 -0.39 -3.03 16 23 C 0.21 3.42 7.03 -83.66 -0.59 2.83 16 24 N -0.71 -12.18 5.76 -52.79 -0.30 -12.48 16 25 H 0.13 2.41 6.63 -51.93 -0.34 2.07 16 26 H 0.08 1.19 6.13 -51.93 -0.32 0.87 16 27 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 28 H 0.09 1.37 7.70 -51.93 -0.40 0.97 16 29 H 0.09 1.03 8.07 -51.93 -0.42 0.61 16 30 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 32 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.41 6.73 8.96 -40.82 -0.37 6.36 16 LS Contribution 295.82 15.07 4.46 4.46 Total: -1.00 -31.01 295.82 -6.96 -37.97 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -3.40 Total: 7.95 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -3.78 Total: 3.70 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.70 Total: -53.73 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.09 Total: -14.55 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.01 -6.96 -37.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155673984.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.155 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds