Wall clock time and date at job start Mon Mar 30 2020 05:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86801 * 120.00376 * 2 1 4 4 H 1.48501 * 109.46882 * 270.00196 * 3 2 1 5 5 H 1.48500 * 109.46738 * 30.00217 * 3 2 1 6 6 H 1.48500 * 109.46982 * 150.00193 * 3 2 1 7 7 C 1.39896 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00200 * 197.93260 * 7 2 1 9 9 C 1.41219 * 120.00110 * 17.93474 * 7 2 1 10 10 C 1.40829 * 120.17942 * 24.54252 * 9 7 2 11 11 C 1.36433 * 119.81465 * 180.02562 * 10 9 7 12 12 C 1.39317 * 120.18285 * 0.02562 * 11 10 9 13 13 O 1.35670 * 119.81905 * 179.97438 * 12 11 10 14 14 C 1.42894 * 117.00218 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47248 * 180.02562 * 14 13 12 16 16 C 1.38199 * 119.90624 * 0.02562 * 15 14 13 17 17 N 1.32219 * 120.10683 * 179.97438 * 16 15 14 18 18 C 1.32682 * 119.91216 * 0.02562 * 17 16 15 19 19 N 1.39000 * 120.09563 * 179.97438 * 18 17 16 20 20 C 1.39291 * 119.81298 * 0.24495 * 18 17 16 21 21 N 1.31953 * 119.89139 * 359.49130 * 20 18 17 22 22 C 1.39313 * 120.36197 * 0.26179 * 12 11 10 23 23 C 1.36431 * 120.18883 * 359.47509 * 22 12 11 24 24 H 0.97003 * 119.99825 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.09446 * 0.02562 * 10 9 7 26 26 H 1.08002 * 119.91424 * 179.97438 * 11 10 9 27 27 H 1.09002 * 109.47244 * 60.00666 * 14 13 12 28 28 H 1.09003 * 109.47346 * 300.00017 * 14 13 12 29 29 H 1.08005 * 119.94848 * 359.97438 * 16 15 14 30 30 H 0.97002 * 120.00197 * 359.97438 * 19 18 17 31 31 H 0.97001 * 120.00428 * 179.71942 * 19 18 17 32 32 H 1.08000 * 120.05771 * 179.72437 * 20 18 17 33 33 H 1.08006 * 119.90360 * 179.72101 * 22 12 11 34 34 H 1.07994 * 120.10058 * 180.26156 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4903 2.0463 -1.4001 5 1 1.4404 2.6526 0.7001 6 1 3.5404 1.4400 0.7000 7 6 2.0082 -1.2116 -0.0005 8 1 3.0488 -1.2345 0.2874 9 6 1.3535 -2.4047 -0.3777 10 6 0.2245 -2.3575 -1.2181 11 6 -0.4026 -3.5147 -1.5773 12 6 0.0708 -4.7406 -1.1148 13 8 -0.5588 -5.8867 -1.4762 14 6 -0.0229 -7.1096 -0.9670 15 6 -0.8456 -8.2671 -1.4714 16 6 -1.9292 -8.0344 -2.2970 17 7 -2.6534 -9.0470 -2.7422 18 6 -2.3390 -10.2884 -2.3949 19 7 -3.0981 -11.3558 -2.8603 20 6 -1.2496 -10.5186 -1.5580 21 7 -0.5289 -9.5028 -1.1223 22 6 1.1835 -4.7956 -0.2783 23 6 1.8252 -3.6480 0.0860 24 1 -0.4850 0.8401 0.0004 25 1 -0.1440 -1.4079 -1.5771 26 1 -1.2689 -3.4803 -2.2214 27 1 -0.0494 -7.0921 0.1225 28 1 1.0076 -7.2228 -1.3037 29 1 -2.1848 -7.0236 -2.5790 30 1 -3.8591 -11.1937 -3.4395 31 1 -2.8647 -12.2631 -2.6089 32 1 -0.9929 -11.5271 -1.2693 33 1 1.5415 -5.7496 0.0796 34 1 2.6902 -3.6927 0.7311 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231309522.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:25 Heat of formation + Delta-G solvation = 32.452009 kcal Electronic energy + Delta-G solvation = -18954.148779 eV Core-core repulsion = 15852.164848 eV Total energy + Delta-G solvation = -3101.983930 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.07638 -38.80126 -36.56630 -35.52214 -33.72486 -33.34678 -30.97355 -29.63249 -28.93980 -26.37725 -24.92323 -24.49541 -22.64187 -20.82404 -20.58542 -18.41552 -17.62955 -17.35748 -16.75539 -16.14910 -15.63227 -15.53421 -15.16574 -14.61563 -14.54292 -13.92806 -13.78009 -13.03797 -12.52888 -12.21947 -12.19206 -12.02102 -11.58752 -11.49932 -11.23650 -11.10994 -10.86207 -10.68899 -10.60677 -10.01141 -9.82528 -9.37941 -9.06956 -9.02302 -8.08598 -7.63389 -7.04180 -6.72251 -4.25445 0.93594 1.21795 2.77842 2.96545 3.09502 3.12839 3.13632 3.21814 3.59010 3.73653 3.95927 4.36063 4.56688 4.61996 4.73280 5.06983 5.28913 5.54764 5.63013 5.72283 5.74609 6.09783 6.22773 6.23445 6.71125 6.77673 6.98507 7.03893 7.11541 7.19027 7.44603 7.51381 7.56184 7.80088 7.91891 8.01029 8.20782 8.42632 8.64673 8.90442 8.98516 10.22259 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.063629 B = 0.003078 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.945065 B = 9095.803356 C = 9456.031281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.089 3.911 10 C -0.135 4.135 11 C -0.117 4.117 12 C -0.009 4.009 13 O -0.329 6.329 14 C 0.133 3.867 15 C 0.018 3.982 16 C 0.131 3.869 17 N -0.504 5.504 18 C 0.346 3.654 19 N -0.844 5.844 20 C -0.006 4.006 21 N -0.400 5.400 22 C -0.164 4.164 23 C -0.198 4.198 24 H 0.280 0.720 25 H 0.126 0.874 26 H 0.098 0.902 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.182 0.818 30 H 0.405 0.595 31 H 0.410 0.590 32 H 0.164 0.836 33 H 0.096 0.904 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.152 -15.829 -3.854 16.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.087 3.913 10 C -0.154 4.154 11 C -0.136 4.136 12 C -0.051 4.051 13 O -0.244 6.244 14 C 0.055 3.945 15 C -0.123 4.123 16 C -0.029 4.029 17 N -0.227 5.227 18 C 0.105 3.895 19 N -0.389 5.389 20 C -0.175 4.175 21 N -0.115 5.115 22 C -0.183 4.183 23 C -0.217 4.217 24 H 0.091 0.909 25 H 0.143 0.857 26 H 0.116 0.884 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.199 0.801 30 H 0.235 0.765 31 H 0.240 0.760 32 H 0.181 0.819 33 H 0.114 0.886 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.487 -15.617 -3.934 16.718 hybrid contribution 0.270 0.301 0.113 0.420 sum -4.217 -15.316 -3.821 16.339 Atomic orbital electron populations 1.69834 1.07497 1.29141 1.35920 1.25881 0.94722 1.01227 0.92378 0.86324 0.80459 0.80716 0.79268 1.19322 1.20403 1.18712 1.19484 0.98137 0.91251 1.40427 0.90510 1.17612 0.91818 0.92123 0.89778 1.20968 0.98553 0.96304 0.99612 1.19817 1.00777 0.90101 1.02865 1.18493 0.97211 0.84145 1.05289 1.85651 1.55211 1.12303 1.71273 1.20638 0.95160 0.80573 0.98085 1.21520 0.97994 0.92555 1.00246 1.23406 0.89813 0.98559 0.91085 1.68077 1.30931 0.98074 1.25648 1.19443 0.90272 0.88486 0.91253 1.42081 1.34311 1.05746 1.56777 1.22917 0.94740 0.99208 1.00664 1.67768 1.26543 0.98763 1.18403 1.20436 0.97787 0.97970 1.02136 1.20571 1.03142 0.92489 1.05541 0.90912 0.85655 0.88375 0.90919 0.90947 0.80139 0.76540 0.76024 0.81930 0.88571 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.53 10.96 55.55 0.61 -19.92 16 2 C 0.07 1.87 5.13 -17.34 -0.09 1.78 16 3 Si 0.91 18.63 29.60 -169.99 -5.03 13.60 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -12.21 9.04 -37.83 -0.34 -12.56 16 8 H 0.08 1.95 7.91 -52.49 -0.42 1.54 16 9 C 0.09 2.35 5.57 -106.80 -0.60 1.76 16 10 C -0.14 -3.47 8.64 -39.25 -0.34 -3.81 16 11 C -0.12 -2.75 9.92 -39.83 -0.40 -3.15 16 12 C -0.01 -0.19 6.71 -38.78 -0.26 -0.45 16 13 O -0.33 -6.39 8.59 -18.71 -0.16 -6.55 16 14 C 0.13 2.19 5.28 36.01 0.19 2.38 16 15 C 0.02 0.27 6.78 -82.43 -0.56 -0.29 16 16 C 0.13 1.96 10.55 -17.40 -0.18 1.77 16 17 N -0.50 -7.00 10.53 -12.24 -0.13 -7.13 16 18 C 0.35 3.91 7.77 -154.72 -1.20 2.71 16 19 N -0.84 -5.77 9.08 31.21 0.28 -5.48 16 20 C -0.01 -0.07 11.08 -17.11 -0.19 -0.26 16 21 N -0.40 -5.72 10.41 -9.11 -0.09 -5.81 16 22 C -0.16 -3.67 8.96 -39.83 -0.36 -4.02 16 23 C -0.20 -4.81 9.74 -39.25 -0.38 -5.20 16 24 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 25 H 0.13 3.30 6.16 -52.49 -0.32 2.98 16 26 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 27 H 0.07 1.19 7.64 -51.93 -0.40 0.79 16 28 H 0.07 1.17 7.66 -51.93 -0.40 0.77 16 29 H 0.18 2.66 6.99 -52.48 -0.37 2.30 16 30 H 0.41 2.45 8.95 -40.82 -0.37 2.09 16 31 H 0.41 1.49 8.84 -40.82 -0.36 1.13 16 32 H 0.16 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.10 1.86 6.27 -52.48 -0.33 1.54 16 34 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 298.56 15.07 4.50 4.50 Total: -1.00 -29.65 298.56 -8.09 -37.73 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -3.36 Total: 8.40 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -4.70 Total: -19.33 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.67 Total: -38.35 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.16 Total: -6.55 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.65 -8.09 -37.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231309522.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.184 kcal (2) G-P(sol) polarization free energy of solvation -29.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds