Wall clock time and date at job start Mon Mar 30 2020 05:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86801 * 120.00376 * 2 1 4 4 H 1.48501 * 109.46882 * 270.00196 * 3 2 1 5 5 H 1.48500 * 109.46738 * 30.00217 * 3 2 1 6 6 H 1.48500 * 109.46982 * 150.00193 * 3 2 1 7 7 C 1.39896 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00200 * 197.93260 * 7 2 1 9 9 C 1.41219 * 120.00110 * 17.93474 * 7 2 1 10 10 C 1.40829 * 120.17942 * 24.54252 * 9 7 2 11 11 C 1.36433 * 119.81465 * 180.02562 * 10 9 7 12 12 C 1.39317 * 120.18285 * 0.02562 * 11 10 9 13 13 O 1.35670 * 119.81905 * 179.97438 * 12 11 10 14 14 C 1.42894 * 117.00218 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47248 * 180.02562 * 14 13 12 16 16 C 1.38199 * 119.90624 * 0.02562 * 15 14 13 17 17 N 1.32219 * 120.10683 * 179.97438 * 16 15 14 18 18 C 1.32682 * 119.91216 * 0.02562 * 17 16 15 19 19 N 1.39000 * 120.09563 * 179.97438 * 18 17 16 20 20 C 1.39291 * 119.81298 * 0.24495 * 18 17 16 21 21 N 1.31953 * 119.89139 * 359.49130 * 20 18 17 22 22 C 1.39313 * 120.36197 * 0.26179 * 12 11 10 23 23 C 1.36431 * 120.18883 * 359.47509 * 22 12 11 24 24 H 0.97003 * 119.99825 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.09446 * 0.02562 * 10 9 7 26 26 H 1.08002 * 119.91424 * 179.97438 * 11 10 9 27 27 H 1.09002 * 109.47244 * 60.00666 * 14 13 12 28 28 H 1.09003 * 109.47346 * 300.00017 * 14 13 12 29 29 H 1.08005 * 119.94848 * 359.97438 * 16 15 14 30 30 H 0.97002 * 120.00197 * 359.97438 * 19 18 17 31 31 H 0.97001 * 120.00428 * 179.71942 * 19 18 17 32 32 H 1.08000 * 120.05771 * 179.72437 * 20 18 17 33 33 H 1.08006 * 119.90360 * 179.72101 * 22 12 11 34 34 H 1.07994 * 120.10058 * 180.26156 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4903 2.0463 -1.4001 5 1 1.4404 2.6526 0.7001 6 1 3.5404 1.4400 0.7000 7 6 2.0082 -1.2116 -0.0005 8 1 3.0488 -1.2345 0.2874 9 6 1.3535 -2.4047 -0.3777 10 6 0.2245 -2.3575 -1.2181 11 6 -0.4026 -3.5147 -1.5773 12 6 0.0708 -4.7406 -1.1148 13 8 -0.5588 -5.8867 -1.4762 14 6 -0.0229 -7.1096 -0.9670 15 6 -0.8456 -8.2671 -1.4714 16 6 -1.9292 -8.0344 -2.2970 17 7 -2.6534 -9.0470 -2.7422 18 6 -2.3390 -10.2884 -2.3949 19 7 -3.0981 -11.3558 -2.8603 20 6 -1.2496 -10.5186 -1.5580 21 7 -0.5289 -9.5028 -1.1223 22 6 1.1835 -4.7956 -0.2783 23 6 1.8252 -3.6480 0.0860 24 1 -0.4850 0.8401 0.0004 25 1 -0.1440 -1.4079 -1.5771 26 1 -1.2689 -3.4803 -2.2214 27 1 -0.0494 -7.0921 0.1225 28 1 1.0076 -7.2228 -1.3037 29 1 -2.1848 -7.0236 -2.5790 30 1 -3.8591 -11.1937 -3.4395 31 1 -2.8647 -12.2631 -2.6089 32 1 -0.9929 -11.5271 -1.2693 33 1 1.5415 -5.7496 0.0796 34 1 2.6902 -3.6927 0.7311 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231309522.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:25 Heat of formation + Delta-G solvation = 13.126410 kcal Electronic energy + Delta-G solvation = -18954.986800 eV Core-core repulsion = 15852.164848 eV Total energy + Delta-G solvation = -3102.821951 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.07628 -40.47081 -38.25592 -36.48420 -35.19628 -34.66653 -32.26532 -31.36006 -30.72691 -27.62093 -26.52664 -25.68396 -23.84796 -22.60169 -22.31073 -19.48936 -19.22909 -18.48465 -18.23273 -17.38324 -16.96932 -16.92006 -16.31856 -15.90145 -15.69462 -15.66536 -15.10002 -14.76649 -14.03332 -13.96199 -13.78467 -13.52001 -13.10209 -12.77944 -12.70882 -12.56039 -12.48620 -12.32229 -11.75744 -11.63259 -11.49535 -11.19819 -10.87462 -10.09824 -9.52726 -8.96920 -8.89073 -8.57791 -6.20929 -0.05427 0.21833 0.97130 1.06339 1.41519 1.54400 1.54512 2.22494 2.25486 2.39905 2.73053 2.75146 3.34015 3.62408 3.72981 3.73846 3.98870 4.17031 4.33939 4.38820 4.39956 4.51320 4.62425 4.91685 5.09511 5.23244 5.27525 5.30801 5.59818 5.67446 5.90630 6.04877 6.08363 6.26704 6.29245 6.56842 6.65112 6.79988 6.97466 7.08719 7.12287 8.38730 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.063629 B = 0.003078 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.945065 B = 9095.803356 C = 9456.031281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.499 4.499 8 H 0.075 0.925 9 C 0.056 3.944 10 C -0.154 4.154 11 C -0.127 4.127 12 C 0.003 3.997 13 O -0.328 6.328 14 C 0.134 3.866 15 C -0.008 4.008 16 C 0.120 3.880 17 N -0.526 5.526 18 C 0.350 3.650 19 N -0.819 5.819 20 C 0.005 3.995 21 N -0.415 5.415 22 C -0.164 4.164 23 C -0.209 4.209 24 H 0.287 0.713 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.172 0.828 30 H 0.412 0.588 31 H 0.428 0.572 32 H 0.206 0.794 33 H 0.127 0.873 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.268 -18.039 -3.990 18.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.529 4.529 8 H 0.093 0.907 9 C 0.054 3.946 10 C -0.173 4.173 11 C -0.146 4.146 12 C -0.041 4.041 13 O -0.243 6.243 14 C 0.057 3.943 15 C -0.147 4.147 16 C -0.039 4.039 17 N -0.251 5.251 18 C 0.106 3.894 19 N -0.365 5.365 20 C -0.167 4.167 21 N -0.130 5.130 22 C -0.182 4.182 23 C -0.228 4.228 24 H 0.098 0.902 25 H 0.129 0.871 26 H 0.132 0.868 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.189 0.811 30 H 0.243 0.757 31 H 0.262 0.738 32 H 0.222 0.778 33 H 0.145 0.855 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.619 -17.857 -4.079 18.890 hybrid contribution 0.170 0.613 0.101 0.644 sum -4.449 -17.244 -3.977 18.247 Atomic orbital electron populations 1.69888 1.08911 1.30443 1.36450 1.26722 0.95488 1.04421 0.91388 0.85209 0.79029 0.76055 0.79427 1.18769 1.19417 1.18294 1.19723 0.98366 0.92455 1.42354 0.90659 1.17963 0.92683 0.93245 0.90724 1.20902 0.99291 0.96511 1.00606 1.19997 1.01215 0.90213 1.03142 1.18562 0.96687 0.84918 1.03945 1.85661 1.55006 1.12488 1.71177 1.20720 0.95703 0.79681 0.98156 1.21207 0.98750 0.92684 1.02042 1.23230 0.90232 0.98727 0.91695 1.68065 1.31407 0.98942 1.26654 1.19745 0.90459 0.88547 0.90627 1.42103 1.33349 1.05643 1.55373 1.23616 0.93685 1.00150 0.99206 1.67746 1.27432 0.98804 1.19016 1.20723 0.97301 0.98708 1.01499 1.20797 1.03684 0.92586 1.05763 0.90212 0.87126 0.86816 0.90812 0.90567 0.81133 0.75697 0.73804 0.77781 0.85475 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.88 10.96 21.82 0.24 -43.64 16 2 C 0.03 1.72 5.13 85.24 0.44 2.16 16 3 Si 0.98 38.60 29.60 68.60 2.03 40.63 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 7 C -0.50 -27.15 9.04 23.40 0.21 -26.93 16 8 H 0.08 3.95 7.91 -2.91 -0.02 3.92 16 9 C 0.06 3.06 5.57 -21.28 -0.12 2.94 16 10 C -0.15 -8.19 8.64 22.48 0.19 -8.00 16 11 C -0.13 -6.10 9.92 22.11 0.22 -5.88 16 12 C 0.00 0.11 6.71 22.79 0.15 0.27 16 13 O -0.33 -12.66 8.59 -89.87 -0.77 -13.43 16 14 C 0.13 4.34 5.28 71.24 0.38 4.71 16 15 C -0.01 -0.24 6.78 42.49 0.29 0.04 16 16 C 0.12 3.53 10.55 84.63 0.89 4.42 16 17 N -0.53 -13.90 10.53 -192.64 -2.03 -15.92 16 18 C 0.35 6.91 7.77 133.02 1.03 7.94 16 19 N -0.82 -8.13 9.08 -55.18 -0.50 -8.63 16 20 C 0.00 0.09 11.08 84.93 0.94 1.03 16 21 N -0.42 -11.04 10.41 -182.75 -1.90 -12.94 16 22 C -0.16 -7.23 8.96 22.11 0.20 -7.03 16 23 C -0.21 -10.29 9.74 22.48 0.22 -10.07 16 24 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 25 H 0.11 6.12 6.16 -2.91 -0.02 6.10 16 26 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 27 H 0.07 2.34 7.64 -2.39 -0.02 2.33 16 28 H 0.08 2.38 7.66 -2.39 -0.02 2.36 16 29 H 0.17 5.16 6.99 -2.91 -0.02 5.14 16 30 H 0.41 3.59 8.95 -92.71 -0.83 2.76 16 31 H 0.43 1.18 8.84 -92.71 -0.82 0.36 16 32 H 0.21 2.06 8.06 -2.91 -0.02 2.04 16 33 H 0.13 4.73 6.27 -2.91 -0.02 4.71 16 34 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -65.47 298.56 1.63 -63.84 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -0.48 Total: 24.50 kcal Atomic # 6 Polarization: -39.44 SS G_CDS: 5.05 Total: -34.40 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -4.19 Total: -81.14 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.77 Total: -13.43 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -65.47 1.63 -63.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231309522.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.966 kcal (2) G-P(sol) polarization free energy of solvation -65.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds