Wall clock time and date at job start Mon Mar 30 2020 05:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86799 * 120.00276 * 2 1 4 4 H 1.48503 * 109.46815 * 270.00205 * 3 2 1 5 5 H 1.48504 * 109.47212 * 29.99595 * 3 2 1 6 6 H 1.48492 * 109.47289 * 149.99934 * 3 2 1 7 7 C 1.38655 * 119.99590 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00545 * 0.02562 * 7 2 1 9 9 O 1.34834 * 119.99684 * 179.97438 * 7 2 1 10 10 C 1.35751 * 117.00114 * 185.07486 * 9 7 2 11 11 C 1.38902 * 120.06478 * 354.41164 * 10 9 7 12 12 C 1.38076 * 119.92998 * 179.97438 * 11 10 9 13 13 C 1.38332 * 120.06559 * 0.02562 * 12 11 10 14 14 C 1.38277 * 120.13955 * 0.02562 * 13 12 11 15 15 C 1.38118 * 120.06932 * 359.95520 * 14 13 12 16 16 C 1.50699 * 120.03410 * 179.97438 * 15 14 13 17 17 N 1.46497 * 109.47300 * 260.00032 * 16 15 14 18 18 C 1.39736 * 120.00207 * 180.02562 * 17 16 15 19 19 C 1.39271 * 120.87288 * 359.72124 * 18 17 16 20 20 N 1.32263 * 119.00630 * 179.71884 * 19 18 17 21 21 C 1.31792 * 120.90093 * 0.57017 * 20 19 18 22 22 N 1.31786 * 121.93309 * 359.69949 * 21 20 19 23 23 C 1.32271 * 120.89949 * 0.02562 * 22 21 20 24 24 H 0.97008 * 120.00232 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.03981 * 0.25577 * 11 10 9 26 26 H 1.08002 * 119.96907 * 179.97438 * 12 11 10 27 27 H 1.07999 * 119.92741 * 180.02562 * 13 12 11 28 28 H 1.08004 * 119.96226 * 179.97438 * 14 13 12 29 29 H 1.08996 * 109.47218 * 20.00417 * 16 15 14 30 30 H 1.09007 * 109.46821 * 140.00294 * 16 15 14 31 31 H 0.97000 * 119.99679 * 359.97438 * 17 16 15 32 32 H 1.08001 * 120.49397 * 359.97438 * 19 18 17 33 33 H 1.07997 * 119.03477 * 179.73289 * 21 20 19 34 34 H 1.07998 * 120.49825 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5471 1.4401 0.7000 7 6 2.0087 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2009 0.0000 10 6 3.9733 -2.4057 -0.1064 11 6 3.2232 -3.5747 -0.0916 12 6 3.8529 -4.7987 -0.2006 13 6 5.2293 -4.8615 -0.3238 14 6 5.9788 -3.6996 -0.3378 15 6 5.3548 -2.4722 -0.2296 16 6 6.1725 -1.2064 -0.2443 17 7 6.3542 -0.7263 1.1278 18 6 7.0837 0.4408 1.3689 19 6 7.6510 1.1587 0.3189 20 7 8.3294 2.2616 0.5887 21 6 8.4810 2.6761 1.8305 22 7 7.9647 2.0223 2.8516 23 6 7.2680 0.9134 2.6659 24 1 -0.4851 0.8401 -0.0004 25 1 2.1483 -3.5262 0.0004 26 1 3.2703 -5.7081 -0.1887 27 1 5.7194 -5.8200 -0.4093 28 1 7.0533 -3.7519 -0.4338 29 1 7.1462 -1.4081 -0.6906 30 1 5.6549 -0.4463 -0.8297 31 1 5.9673 -1.2183 1.8689 32 1 7.5350 0.8222 -0.7008 33 1 9.0445 3.5784 2.0168 34 1 6.8474 0.3829 3.5074 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232086440.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:34 Heat of formation + Delta-G solvation = 50.809676 kcal Electronic energy + Delta-G solvation = -19826.082188 eV Core-core repulsion = 16724.894306 eV Total energy + Delta-G solvation = -3101.187882 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.73706 -39.55114 -36.93680 -36.05126 -33.44658 -32.58193 -31.86047 -29.54640 -28.94973 -25.98667 -25.35484 -24.25785 -22.80533 -21.70214 -20.88894 -18.06253 -17.89964 -17.49095 -17.04975 -16.59281 -15.31675 -15.16334 -14.70580 -14.57456 -14.20836 -13.90046 -13.82471 -13.44165 -13.22734 -13.09814 -12.49829 -12.42703 -12.34589 -11.58811 -11.23859 -11.01025 -10.93827 -10.85148 -10.65766 -10.48457 -10.30188 -9.56539 -9.05487 -9.02246 -8.44601 -7.60235 -7.52572 -6.56688 -4.24376 1.23894 1.34386 1.74317 2.07349 3.12383 3.17448 3.30548 3.51116 4.03831 4.10437 4.32967 4.46086 4.48314 4.62216 4.67498 4.94957 4.98470 5.12415 5.25501 5.49847 5.53813 5.62972 5.72829 5.88967 5.93930 6.12499 6.35597 6.46416 6.55151 6.90471 6.94242 7.00540 7.10446 7.29549 7.41709 7.60876 7.70904 7.86926 8.32612 8.77882 9.36098 10.50294 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.013072 B = 0.007520 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.549415 B = 3722.720556 C = 5479.861584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.069 3.931 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.393 4.393 8 H 0.108 0.892 9 O -0.205 6.205 10 C 0.174 3.826 11 C -0.223 4.223 12 C -0.065 4.065 13 C -0.211 4.211 14 C -0.055 4.055 15 C -0.194 4.194 16 C 0.180 3.820 17 N -0.712 5.712 18 C 0.133 3.867 19 C 0.063 3.937 20 N -0.480 5.480 21 C 0.207 3.793 22 N -0.480 5.480 23 C 0.066 3.934 24 H 0.281 0.719 25 H 0.135 0.865 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.115 0.885 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.406 0.594 32 H 0.162 0.838 33 H 0.188 0.812 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.326 -3.099 1.131 12.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.136 4.136 3 Si 0.727 3.273 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.468 4.468 8 H 0.125 0.875 9 O -0.109 6.109 10 C 0.120 3.880 11 C -0.242 4.242 12 C -0.083 4.083 13 C -0.230 4.230 14 C -0.074 4.074 15 C -0.196 4.196 16 C 0.057 3.943 17 N -0.339 5.339 18 C 0.020 3.980 19 C -0.110 4.110 20 N -0.192 5.192 21 C -0.082 4.082 22 N -0.193 5.193 23 C -0.108 4.108 24 H 0.092 0.908 25 H 0.152 0.848 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.133 0.867 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.242 0.758 32 H 0.179 0.821 33 H 0.204 0.796 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 12.681 -1.926 1.108 12.874 hybrid contribution -0.753 -0.390 0.075 0.851 sum 11.928 -2.316 1.183 12.209 Atomic orbital electron populations 1.69632 1.05593 1.28733 1.46983 1.24445 0.94983 0.98775 0.95378 0.86245 0.80454 0.81519 0.79128 1.19777 1.20701 1.18267 1.20761 0.76724 0.96651 1.52710 0.87511 1.83591 1.22687 1.25404 1.79215 1.18915 0.90937 0.85724 0.92392 1.21318 1.01299 0.91839 1.09742 1.20899 0.94406 0.96837 0.96183 1.20664 0.94049 0.97419 1.10830 1.20589 0.98540 0.91214 0.97078 1.18754 0.90879 0.94262 1.15658 1.19997 0.97758 0.93813 0.82748 1.44919 1.55823 1.24049 1.09081 1.19755 0.92729 0.89235 0.96245 1.22709 0.97268 0.92093 0.98954 1.68133 1.14100 1.12821 1.24147 1.24395 0.99999 1.00434 0.83348 1.68129 1.07858 1.06525 1.36760 1.22687 0.99144 0.94332 0.94606 0.90835 0.84751 0.87044 0.87230 0.86722 0.91790 0.91181 0.75821 0.82059 0.79584 0.82096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.33 13.96 55.48 0.77 -23.55 16 2 C 0.07 1.85 5.49 -17.52 -0.10 1.75 16 3 Si 0.90 21.23 28.62 -169.99 -4.86 16.36 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.39 -10.35 9.95 30.89 0.31 -10.04 16 8 H 0.11 2.89 5.44 -52.49 -0.29 2.60 16 9 O -0.21 -4.86 7.83 0.03 0.00 -4.86 16 10 C 0.17 3.54 6.62 -39.11 -0.26 3.28 16 11 C -0.22 -4.34 9.17 -39.40 -0.36 -4.70 16 12 C -0.06 -1.05 10.04 -39.61 -0.40 -1.44 16 13 C -0.21 -3.08 10.04 -39.53 -0.40 -3.48 16 14 C -0.06 -0.81 9.66 -39.61 -0.38 -1.19 16 15 C -0.19 -3.24 5.26 -104.44 -0.55 -3.79 16 16 C 0.18 2.69 4.75 -5.20 -0.02 2.67 16 17 N -0.71 -10.44 5.73 -59.60 -0.34 -10.78 16 18 C 0.13 1.97 6.70 -83.49 -0.56 1.41 16 19 C 0.06 0.93 10.59 -16.98 -0.18 0.75 16 20 N -0.48 -7.35 10.43 -14.43 -0.15 -7.50 16 21 C 0.21 2.96 12.28 -92.16 -1.13 1.83 16 22 N -0.48 -7.25 10.43 -14.43 -0.15 -7.40 16 23 C 0.07 0.95 11.20 -16.98 -0.19 0.76 16 24 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.13 2.79 5.64 -52.49 -0.30 2.50 16 26 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 27 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 28 H 0.11 1.36 8.04 -52.48 -0.42 0.94 16 29 H 0.06 0.79 7.86 -51.93 -0.41 0.38 16 30 H 0.07 1.17 7.73 -51.92 -0.40 0.77 16 31 H 0.41 5.79 8.50 -40.82 -0.35 5.45 16 32 H 0.16 2.12 6.91 -52.49 -0.36 1.76 16 33 H 0.19 2.04 8.06 -52.49 -0.42 1.62 16 34 H 0.16 1.95 8.06 -52.49 -0.42 1.52 16 LS Contribution 300.72 15.07 4.53 4.53 Total: -1.00 -28.95 300.72 -7.77 -36.72 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -3.35 Total: 8.68 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -4.22 Total: -12.20 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.13 Total: -49.24 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: 0.00 Total: -4.86 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.86 Total: 16.36 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.95 -7.77 -36.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232086440.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.533 kcal (2) G-P(sol) polarization free energy of solvation -28.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds