Wall clock time and date at job start Mon Mar 30 2020 05:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86799 * 120.00276 * 2 1 4 4 H 1.48503 * 109.46815 * 270.00205 * 3 2 1 5 5 H 1.48504 * 109.47212 * 29.99595 * 3 2 1 6 6 H 1.48492 * 109.47289 * 149.99934 * 3 2 1 7 7 C 1.38655 * 119.99590 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00545 * 0.02562 * 7 2 1 9 9 O 1.34834 * 119.99684 * 179.97438 * 7 2 1 10 10 C 1.35751 * 117.00114 * 185.07486 * 9 7 2 11 11 C 1.38902 * 120.06478 * 354.41164 * 10 9 7 12 12 C 1.38076 * 119.92998 * 179.97438 * 11 10 9 13 13 C 1.38332 * 120.06559 * 0.02562 * 12 11 10 14 14 C 1.38277 * 120.13955 * 0.02562 * 13 12 11 15 15 C 1.38118 * 120.06932 * 359.95520 * 14 13 12 16 16 C 1.50699 * 120.03410 * 179.97438 * 15 14 13 17 17 N 1.46497 * 109.47300 * 260.00032 * 16 15 14 18 18 C 1.39736 * 120.00207 * 180.02562 * 17 16 15 19 19 C 1.39271 * 120.87288 * 359.72124 * 18 17 16 20 20 N 1.32263 * 119.00630 * 179.71884 * 19 18 17 21 21 C 1.31792 * 120.90093 * 0.57017 * 20 19 18 22 22 N 1.31786 * 121.93309 * 359.69949 * 21 20 19 23 23 C 1.32271 * 120.89949 * 0.02562 * 22 21 20 24 24 H 0.97008 * 120.00232 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.03981 * 0.25577 * 11 10 9 26 26 H 1.08002 * 119.96907 * 179.97438 * 12 11 10 27 27 H 1.07999 * 119.92741 * 180.02562 * 13 12 11 28 28 H 1.08004 * 119.96226 * 179.97438 * 14 13 12 29 29 H 1.08996 * 109.47218 * 20.00417 * 16 15 14 30 30 H 1.09007 * 109.46821 * 140.00294 * 16 15 14 31 31 H 0.97000 * 119.99679 * 359.97438 * 17 16 15 32 32 H 1.08001 * 120.49397 * 359.97438 * 19 18 17 33 33 H 1.07997 * 119.03477 * 179.73289 * 21 20 19 34 34 H 1.07998 * 120.49825 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5471 1.4401 0.7000 7 6 2.0087 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2009 0.0000 10 6 3.9733 -2.4057 -0.1064 11 6 3.2232 -3.5747 -0.0916 12 6 3.8529 -4.7987 -0.2006 13 6 5.2293 -4.8615 -0.3238 14 6 5.9788 -3.6996 -0.3378 15 6 5.3548 -2.4722 -0.2296 16 6 6.1725 -1.2064 -0.2443 17 7 6.3542 -0.7263 1.1278 18 6 7.0837 0.4408 1.3689 19 6 7.6510 1.1587 0.3189 20 7 8.3294 2.2616 0.5887 21 6 8.4810 2.6761 1.8305 22 7 7.9647 2.0223 2.8516 23 6 7.2680 0.9134 2.6659 24 1 -0.4851 0.8401 -0.0004 25 1 2.1483 -3.5262 0.0004 26 1 3.2703 -5.7081 -0.1887 27 1 5.7194 -5.8200 -0.4093 28 1 7.0533 -3.7519 -0.4338 29 1 7.1462 -1.4081 -0.6906 30 1 5.6549 -0.4463 -0.8297 31 1 5.9673 -1.2183 1.8689 32 1 7.5350 0.8222 -0.7008 33 1 9.0445 3.5784 2.0168 34 1 6.8474 0.3829 3.5074 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232086440.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:33 Heat of formation + Delta-G solvation = 33.005314 kcal Electronic energy + Delta-G solvation = -19826.854243 eV Core-core repulsion = 16724.894306 eV Total energy + Delta-G solvation = -3101.959937 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.85300 -41.03152 -38.43203 -37.24847 -34.56394 -34.49881 -33.14522 -30.89542 -30.21936 -27.48316 -26.90086 -25.39168 -23.95331 -23.20398 -22.22393 -19.81851 -19.25572 -18.55905 -18.49460 -17.71845 -16.80425 -16.60234 -15.99153 -15.84945 -15.70565 -15.42696 -15.26456 -14.58379 -14.50944 -14.36921 -14.18040 -13.95378 -13.70825 -13.14057 -12.62903 -12.53733 -12.37176 -12.25985 -11.99001 -11.79334 -11.64598 -11.29561 -10.96319 -10.17794 -9.77067 -9.10036 -8.65692 -8.54744 -6.25225 0.11738 0.23370 0.41143 0.68307 1.26006 1.26949 1.43040 2.19236 2.34275 2.77994 2.92827 3.03426 3.17154 3.40154 3.44338 3.60434 3.78784 3.94010 4.01921 4.29435 4.42425 4.44372 4.55704 4.63494 4.78709 4.82198 4.98088 5.21633 5.38869 5.42347 5.59043 5.72275 5.76749 5.85756 5.89438 6.16927 6.23972 6.57264 6.81303 7.22099 7.55482 8.56942 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.013072 B = 0.007520 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.549415 B = 3722.720556 C = 5479.861584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.961 3.039 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.391 4.391 8 H 0.083 0.917 9 O -0.230 6.230 10 C 0.139 3.861 11 C -0.246 4.246 12 C -0.069 4.069 13 C -0.186 4.186 14 C -0.049 4.049 15 C -0.181 4.181 16 C 0.182 3.818 17 N -0.713 5.713 18 C 0.124 3.876 19 C 0.054 3.946 20 N -0.494 5.494 21 C 0.204 3.796 22 N -0.495 5.495 23 C 0.061 3.939 24 H 0.283 0.717 25 H 0.106 0.894 26 H 0.136 0.864 27 H 0.151 0.849 28 H 0.158 0.842 29 H 0.100 0.900 30 H 0.048 0.952 31 H 0.407 0.593 32 H 0.175 0.825 33 H 0.215 0.785 34 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.688 -4.337 0.980 16.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.181 4.181 3 Si 0.785 3.215 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.468 4.468 8 H 0.101 0.899 9 O -0.137 6.137 10 C 0.089 3.911 11 C -0.265 4.265 12 C -0.087 4.087 13 C -0.204 4.204 14 C -0.067 4.067 15 C -0.183 4.183 16 C 0.059 3.941 17 N -0.340 5.340 18 C 0.012 3.988 19 C -0.118 4.118 20 N -0.207 5.207 21 C -0.085 4.085 22 N -0.207 5.207 23 C -0.112 4.112 24 H 0.093 0.907 25 H 0.124 0.876 26 H 0.154 0.846 27 H 0.169 0.831 28 H 0.175 0.825 29 H 0.118 0.882 30 H 0.066 0.934 31 H 0.242 0.758 32 H 0.192 0.808 33 H 0.231 0.769 34 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 16.085 -3.203 0.953 16.428 hybrid contribution -1.551 -0.323 0.108 1.588 sum 14.534 -3.526 1.061 14.993 Atomic orbital electron populations 1.69714 1.06782 1.29371 1.50303 1.25090 0.95637 1.01489 0.95879 0.85347 0.78849 0.78325 0.79006 1.19407 1.20136 1.18892 1.20660 0.78323 0.95809 1.51960 0.89949 1.83552 1.20755 1.27058 1.82346 1.19475 0.92593 0.85058 0.93979 1.21340 1.00273 0.93496 1.11412 1.21221 0.95789 0.96256 0.95406 1.21219 0.93135 0.99362 1.06712 1.21101 1.00691 0.89918 0.95031 1.19095 0.89354 0.96267 1.13583 1.20024 0.98846 0.92347 0.82921 1.44795 1.56057 1.24235 1.08882 1.19793 0.93087 0.89392 0.96478 1.23004 0.97029 0.92065 0.99699 1.68196 1.14706 1.13159 1.24646 1.25007 0.99515 1.01000 0.82988 1.68206 1.08451 1.06934 1.37133 1.23055 0.98680 0.94230 0.95223 0.90709 0.87642 0.84566 0.83109 0.82471 0.88236 0.93378 0.75751 0.80757 0.76870 0.80322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.97 13.96 21.61 0.30 -53.67 16 2 C 0.02 1.01 5.49 84.83 0.47 1.47 16 3 Si 0.96 45.34 28.62 68.60 1.96 47.31 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.39 -21.74 9.95 67.92 0.68 -21.06 16 8 H 0.08 4.83 5.44 -2.91 -0.02 4.82 16 9 O -0.23 -11.28 7.83 -22.80 -0.18 -11.46 16 10 C 0.14 5.69 6.62 22.58 0.15 5.83 16 11 C -0.25 -9.71 9.17 22.39 0.21 -9.51 16 12 C -0.07 -2.04 10.04 22.25 0.22 -1.82 16 13 C -0.19 -4.49 10.04 22.30 0.22 -4.26 16 14 C -0.05 -1.18 9.66 22.25 0.22 -0.97 16 15 C -0.18 -5.63 5.26 -19.75 -0.10 -5.74 16 16 C 0.18 5.00 4.75 85.63 0.41 5.40 16 17 N -0.71 -19.52 5.73 -342.46 -1.96 -21.49 16 18 C 0.12 3.46 6.70 38.38 0.26 3.72 16 19 C 0.05 1.52 10.59 84.88 0.90 2.42 16 20 N -0.49 -14.24 10.43 -199.56 -2.08 -16.32 16 21 C 0.20 5.43 12.28 180.89 2.22 7.65 16 22 N -0.49 -14.07 10.43 -199.56 -2.08 -16.16 16 23 C 0.06 1.66 11.20 84.88 0.95 2.61 16 24 H 0.28 15.39 8.31 -92.70 -0.77 14.62 16 25 H 0.11 4.73 5.64 -2.91 -0.02 4.71 16 26 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 27 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 28 H 0.16 2.59 8.04 -2.91 -0.02 2.57 16 29 H 0.10 2.03 7.86 -2.39 -0.02 2.01 16 30 H 0.05 1.56 7.73 -2.38 -0.02 1.54 16 31 H 0.41 10.96 8.50 -92.71 -0.79 10.18 16 32 H 0.18 4.22 6.91 -2.91 -0.02 4.20 16 33 H 0.22 4.18 8.06 -2.91 -0.02 4.16 16 34 H 0.18 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -65.80 300.72 3.10 -62.69 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.36 Total: 23.34 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 6.79 Total: -14.25 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -5.82 Total: -107.64 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -0.18 Total: -11.46 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.96 Total: 47.31 kcal Total: -65.80 3.10 -62.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232086440.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.698 kcal (2) G-P(sol) polarization free energy of solvation -65.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds