Wall clock time and date at job start Mon Mar 30 2020 05:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86798 * 119.99744 * 2 1 4 4 H 1.48496 * 109.47181 * 240.00040 * 3 2 1 5 5 H 1.48499 * 109.47389 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46715 * 120.00315 * 3 2 1 7 7 C 1.38653 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99399 * 180.02562 * 7 2 1 9 9 O 1.34823 * 120.00300 * 359.97438 * 7 2 1 10 10 C 1.35752 * 117.00246 * 185.06421 * 9 7 2 11 11 C 1.38885 * 120.06589 * 354.46573 * 10 9 7 12 12 C 1.38097 * 119.93117 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.06687 * 0.02562 * 12 11 10 14 14 C 1.50696 * 119.92864 * 179.97438 * 13 12 11 15 15 N 1.46500 * 109.47432 * 90.00154 * 14 13 12 16 16 C 1.39745 * 120.00248 * 180.02562 * 15 14 13 17 17 C 1.39271 * 120.87542 * 180.02562 * 16 15 14 18 18 N 1.32267 * 119.00805 * 179.97438 * 17 16 15 19 19 C 1.31784 * 120.89555 * 359.97438 * 18 17 16 20 20 N 1.31787 * 121.94194 * 0.02562 * 19 18 17 21 21 C 1.32265 * 120.89405 * 359.97438 * 20 19 18 22 22 C 1.38301 * 120.13949 * 0.25764 * 13 12 11 23 23 C 1.38095 * 120.06724 * 359.45031 * 22 13 12 24 24 H 0.96996 * 120.00300 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.03728 * 359.97438 * 11 10 9 26 26 H 1.07997 * 119.96656 * 180.02562 * 12 11 10 27 27 H 1.09004 * 109.47493 * 329.99738 * 14 13 12 28 28 H 1.09004 * 109.47555 * 210.00194 * 14 13 12 29 29 H 0.96994 * 120.00101 * 359.97438 * 15 14 13 30 30 H 1.08002 * 120.49367 * 359.95363 * 17 16 15 31 31 H 1.08008 * 119.03013 * 179.72450 * 19 18 17 32 32 H 1.08003 * 120.49468 * 179.97438 * 21 20 19 33 33 H 1.08000 * 119.96607 * 179.70535 * 22 13 12 34 34 H 1.08002 * 120.03808 * 180.27321 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1057 11 6 3.4572 -3.4395 0.0924 12 6 4.2025 -4.5971 0.2001 13 6 3.5687 -5.8205 0.3206 14 6 4.3850 -7.0818 0.4374 15 7 4.6566 -7.3588 1.8501 16 6 5.4025 -8.4841 2.2107 17 6 5.6710 -8.7652 3.5480 18 7 6.3803 -9.8406 3.8476 19 6 6.8298 -10.6400 2.9012 20 7 6.5974 -10.4089 1.6248 21 6 5.8962 -9.3548 1.2421 22 6 2.1875 -5.8892 0.3283 23 6 1.4367 -4.7346 0.2270 24 1 -0.4850 0.8400 0.0004 25 1 3.9527 -2.4846 -0.0030 26 1 5.2813 -4.5470 0.1902 27 1 5.3274 -6.9555 -0.0958 28 1 3.8312 -7.9145 0.0038 29 1 4.3192 -6.7607 2.5351 30 1 5.3057 -8.1145 4.3288 31 1 7.4098 -11.5075 3.1797 32 1 5.7099 -9.1714 0.1942 33 1 1.6955 -6.8465 0.4177 34 1 0.3581 -4.7885 0.2375 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232086876.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:36 Heat of formation + Delta-G solvation = 47.831516 kcal Electronic energy + Delta-G solvation = -18788.973821 eV Core-core repulsion = 15687.656796 eV Total energy + Delta-G solvation = -3101.317025 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.96215 -39.28311 -37.38120 -35.78769 -33.67394 -32.52654 -31.26251 -30.36422 -28.78888 -26.08264 -25.22141 -24.28882 -22.89344 -22.15576 -20.72593 -18.18751 -17.95473 -17.70690 -17.04200 -16.80143 -15.26198 -15.07451 -14.74565 -14.63981 -14.32346 -13.84863 -13.73843 -13.63404 -13.44803 -13.16992 -12.87939 -12.41724 -11.81120 -11.60069 -11.34762 -10.97972 -10.94756 -10.88223 -10.82589 -10.69323 -10.55501 -9.50882 -9.26148 -8.97955 -8.38831 -7.79223 -7.43362 -6.59687 -4.18931 1.01289 1.10119 1.95091 2.03684 3.04158 3.04889 3.08694 3.33992 3.81017 3.84740 4.24442 4.26307 4.38701 4.45888 4.77130 4.94444 5.00029 5.10027 5.21225 5.31048 5.52340 5.56863 5.66437 5.68029 6.02918 6.23883 6.24655 6.49411 6.69767 6.76239 6.87020 7.04163 7.06789 7.16221 7.26768 7.47473 7.61847 7.84482 8.10897 8.85248 9.52194 10.57508 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.042171 B = 0.003010 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.802088 B = 9298.610399 C = 9541.477355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.395 4.395 8 H 0.093 0.907 9 O -0.171 6.171 10 C 0.162 3.838 11 C -0.238 4.238 12 C -0.049 4.049 13 C -0.218 4.218 14 C 0.179 3.821 15 N -0.720 5.720 16 C 0.126 3.874 17 C 0.066 3.934 18 N -0.480 5.480 19 C 0.211 3.789 20 N -0.480 5.480 21 C 0.064 3.936 22 C -0.053 4.053 23 C -0.196 4.196 24 H 0.273 0.727 25 H 0.128 0.872 26 H 0.108 0.892 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.406 0.594 30 H 0.162 0.838 31 H 0.188 0.812 32 H 0.163 0.837 33 H 0.112 0.888 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.077 -12.534 2.719 15.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.471 4.471 8 H 0.111 0.889 9 O -0.073 6.073 10 C 0.106 3.894 11 C -0.257 4.257 12 C -0.068 4.068 13 C -0.220 4.220 14 C 0.056 3.944 15 N -0.348 5.348 16 C 0.014 3.986 17 C -0.107 4.107 18 N -0.192 5.192 19 C -0.078 4.078 20 N -0.192 5.192 21 C -0.109 4.109 22 C -0.071 4.071 23 C -0.215 4.215 24 H 0.083 0.917 25 H 0.146 0.854 26 H 0.126 0.874 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.243 0.757 30 H 0.180 0.820 31 H 0.205 0.795 32 H 0.180 0.820 33 H 0.130 0.870 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.123 -13.074 2.725 16.173 hybrid contribution -0.167 1.887 -0.012 1.895 sum 8.957 -11.186 2.713 14.585 Atomic orbital electron populations 1.70022 1.06041 1.28124 1.44980 1.25332 0.95872 0.98986 0.96207 0.85753 0.78747 0.79516 0.79305 1.19371 1.20141 1.19382 1.21321 0.91866 0.80692 1.53241 0.88919 1.83976 1.34552 1.11592 1.77185 1.19447 0.90322 0.88062 0.91524 1.21160 0.93780 0.98990 1.11770 1.20628 0.98341 0.91636 0.96152 1.19073 0.93486 0.93386 1.16047 1.20103 0.98096 0.95298 0.80874 1.45157 1.56285 1.24728 1.08595 1.19797 0.93058 0.89908 0.95816 1.22733 0.98568 0.96043 0.93333 1.68158 1.08580 1.03614 1.38885 1.24452 0.99979 0.99440 0.83915 1.68163 1.12219 1.18316 1.20500 1.22741 0.97422 0.91060 0.99692 1.20515 0.92727 0.96841 0.97055 1.20220 0.99734 0.90246 1.11315 0.91719 0.85385 0.87416 0.91920 0.91870 0.75745 0.82038 0.79487 0.82003 0.86975 0.86333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.23 13.67 55.48 0.76 -23.47 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 19.62 29.55 -169.99 -5.02 14.60 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.40 -10.52 9.49 30.89 0.29 -10.23 16 8 H 0.09 2.26 5.20 -52.48 -0.27 1.99 16 9 O -0.17 -4.63 9.76 0.06 0.00 -4.63 16 10 C 0.16 3.62 6.65 -39.11 -0.26 3.36 16 11 C -0.24 -4.71 9.17 -39.39 -0.36 -5.07 16 12 C -0.05 -0.78 9.69 -39.61 -0.38 -1.17 16 13 C -0.22 -3.14 5.25 -104.58 -0.55 -3.69 16 14 C 0.18 1.97 5.08 -5.20 -0.03 1.94 16 15 N -0.72 -7.52 5.74 -59.59 -0.34 -7.86 16 16 C 0.13 1.37 6.70 -83.48 -0.56 0.81 16 17 C 0.07 0.72 11.20 -16.98 -0.19 0.53 16 18 N -0.48 -5.77 10.43 -14.43 -0.15 -5.92 16 19 C 0.21 2.39 12.27 -92.17 -1.13 1.26 16 20 N -0.48 -5.81 10.43 -14.43 -0.15 -5.96 16 21 C 0.06 0.71 10.59 -16.98 -0.18 0.53 16 22 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 23 C -0.20 -3.77 9.99 -39.40 -0.39 -4.17 16 24 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.13 2.57 5.64 -52.49 -0.30 2.27 16 26 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 27 H 0.06 0.64 7.94 -51.93 -0.41 0.23 16 28 H 0.06 0.64 7.94 -51.93 -0.41 0.23 16 29 H 0.41 4.16 8.50 -40.82 -0.35 3.82 16 30 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.19 1.56 8.06 -52.48 -0.42 1.14 16 32 H 0.16 1.52 6.91 -52.48 -0.36 1.16 16 33 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 302.91 15.07 4.56 4.56 Total: -1.00 -29.69 302.91 -7.92 -37.60 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -3.35 Total: 7.17 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -4.22 Total: -16.09 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.12 Total: -43.22 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: 0.00 Total: -4.63 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.69 -7.92 -37.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232086876.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.434 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds