Wall clock time and date at job start Mon Mar 30 2020 05:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86798 * 119.99744 * 2 1 4 4 H 1.48496 * 109.47181 * 240.00040 * 3 2 1 5 5 H 1.48499 * 109.47389 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46715 * 120.00315 * 3 2 1 7 7 C 1.38653 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99399 * 180.02562 * 7 2 1 9 9 O 1.34823 * 120.00300 * 359.97438 * 7 2 1 10 10 C 1.35752 * 117.00246 * 185.06421 * 9 7 2 11 11 C 1.38885 * 120.06589 * 354.46573 * 10 9 7 12 12 C 1.38097 * 119.93117 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.06687 * 0.02562 * 12 11 10 14 14 C 1.50696 * 119.92864 * 179.97438 * 13 12 11 15 15 N 1.46500 * 109.47432 * 90.00154 * 14 13 12 16 16 C 1.39745 * 120.00248 * 180.02562 * 15 14 13 17 17 C 1.39271 * 120.87542 * 180.02562 * 16 15 14 18 18 N 1.32267 * 119.00805 * 179.97438 * 17 16 15 19 19 C 1.31784 * 120.89555 * 359.97438 * 18 17 16 20 20 N 1.31787 * 121.94194 * 0.02562 * 19 18 17 21 21 C 1.32265 * 120.89405 * 359.97438 * 20 19 18 22 22 C 1.38301 * 120.13949 * 0.25764 * 13 12 11 23 23 C 1.38095 * 120.06724 * 359.45031 * 22 13 12 24 24 H 0.96996 * 120.00300 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.03728 * 359.97438 * 11 10 9 26 26 H 1.07997 * 119.96656 * 180.02562 * 12 11 10 27 27 H 1.09004 * 109.47493 * 329.99738 * 14 13 12 28 28 H 1.09004 * 109.47555 * 210.00194 * 14 13 12 29 29 H 0.96994 * 120.00101 * 359.97438 * 15 14 13 30 30 H 1.08002 * 120.49367 * 359.95363 * 17 16 15 31 31 H 1.08008 * 119.03013 * 179.72450 * 19 18 17 32 32 H 1.08003 * 120.49468 * 179.97438 * 21 20 19 33 33 H 1.08000 * 119.96607 * 179.70535 * 22 13 12 34 34 H 1.08002 * 120.03808 * 180.27321 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1057 11 6 3.4572 -3.4395 0.0924 12 6 4.2025 -4.5971 0.2001 13 6 3.5687 -5.8205 0.3206 14 6 4.3850 -7.0818 0.4374 15 7 4.6566 -7.3588 1.8501 16 6 5.4025 -8.4841 2.2107 17 6 5.6710 -8.7652 3.5480 18 7 6.3803 -9.8406 3.8476 19 6 6.8298 -10.6400 2.9012 20 7 6.5974 -10.4089 1.6248 21 6 5.8962 -9.3548 1.2421 22 6 2.1875 -5.8892 0.3283 23 6 1.4367 -4.7346 0.2270 24 1 -0.4850 0.8400 0.0004 25 1 3.9527 -2.4846 -0.0030 26 1 5.2813 -4.5470 0.1902 27 1 5.3274 -6.9555 -0.0958 28 1 3.8312 -7.9145 0.0038 29 1 4.3192 -6.7607 2.5351 30 1 5.3057 -8.1145 4.3288 31 1 7.4098 -11.5075 3.1797 32 1 5.7099 -9.1714 0.1942 33 1 1.6955 -6.8465 0.4177 34 1 0.3581 -4.7885 0.2375 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232086876.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:36 Heat of formation + Delta-G solvation = 28.963127 kcal Electronic energy + Delta-G solvation = -18789.792016 eV Core-core repulsion = 15687.656796 eV Total energy + Delta-G solvation = -3102.135220 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.79627 -40.83517 -38.78205 -36.90953 -34.51546 -34.35214 -32.44487 -31.81675 -29.89549 -27.63502 -26.51585 -25.23492 -23.81755 -23.65381 -22.09818 -19.89216 -19.05863 -18.59774 -18.49022 -17.64336 -16.53768 -16.43237 -16.07133 -15.82283 -15.58515 -15.47853 -15.08097 -14.62192 -14.40434 -14.36648 -14.14982 -13.83021 -13.51099 -13.02692 -12.60079 -12.43132 -12.31128 -12.17364 -12.03490 -11.75816 -11.63472 -11.19454 -10.81948 -10.10207 -9.81791 -9.02746 -8.61198 -8.49766 -6.18279 0.18907 0.27259 0.54380 0.57529 1.34776 1.44389 1.50607 2.15957 2.36049 2.86780 2.98022 3.17931 3.46480 3.48794 3.49298 3.66324 3.85232 4.00162 4.03347 4.17254 4.46800 4.52361 4.56304 4.69138 4.80411 4.88001 5.03946 5.13032 5.26250 5.43434 5.52994 5.68952 5.74095 5.92589 6.00129 6.16401 6.24773 6.63231 6.95048 7.28468 7.74578 8.72907 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.042171 B = 0.003010 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.802088 B = 9298.610399 C = 9541.477355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.021 4.021 3 Si 1.017 2.983 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.415 4.415 8 H 0.104 0.896 9 O -0.230 6.230 10 C 0.121 3.879 11 C -0.247 4.247 12 C -0.045 4.045 13 C -0.181 4.181 14 C 0.182 3.818 15 N -0.717 5.717 16 C 0.127 3.873 17 C 0.061 3.939 18 N -0.499 5.499 19 C 0.204 3.796 20 N -0.497 5.497 21 C 0.058 3.942 22 C -0.043 4.043 23 C -0.209 4.209 24 H 0.273 0.727 25 H 0.118 0.882 26 H 0.141 0.859 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.409 0.591 30 H 0.180 0.820 31 H 0.209 0.791 32 H 0.181 0.819 33 H 0.149 0.851 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.610 -14.664 2.908 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.219 4.219 3 Si 0.836 3.164 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.491 4.491 8 H 0.121 0.879 9 O -0.136 6.136 10 C 0.070 3.930 11 C -0.266 4.266 12 C -0.064 4.064 13 C -0.183 4.183 14 C 0.059 3.941 15 N -0.345 5.345 16 C 0.015 3.985 17 C -0.111 4.111 18 N -0.211 5.211 19 C -0.084 4.084 20 N -0.210 5.210 21 C -0.114 4.114 22 C -0.061 4.061 23 C -0.228 4.228 24 H 0.082 0.918 25 H 0.136 0.864 26 H 0.159 0.841 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.245 0.755 30 H 0.197 0.803 31 H 0.226 0.774 32 H 0.198 0.802 33 H 0.167 0.833 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.699 -15.269 2.920 19.456 hybrid contribution -0.784 2.089 -0.027 2.231 sum 10.915 -13.180 2.894 17.356 Atomic orbital electron populations 1.70169 1.08050 1.28964 1.48546 1.26580 0.96809 1.02771 0.95764 0.84666 0.77420 0.74322 0.79969 1.18107 1.19762 1.18138 1.21791 0.92558 0.81370 1.53346 0.87916 1.83945 1.36124 1.12709 1.80870 1.20026 0.91708 0.87949 0.93299 1.21264 0.92996 1.00240 1.12138 1.20978 0.99845 0.90777 0.94751 1.19501 0.93334 0.94428 1.11000 1.20142 0.98627 0.93721 0.81563 1.44899 1.56560 1.24833 1.08251 1.19714 0.93153 0.89859 0.95734 1.23090 0.98032 0.95938 0.94084 1.68218 1.09338 1.04267 1.39310 1.24933 0.99795 0.99931 0.83777 1.68218 1.12960 1.18981 1.20838 1.23092 0.96909 0.90745 1.00656 1.20915 0.93290 0.96860 0.95057 1.20475 1.00061 0.90591 1.11661 0.91777 0.86424 0.84148 0.90061 0.89813 0.75478 0.80320 0.77438 0.80226 0.83342 0.86993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.21 13.67 21.61 0.30 -54.92 16 2 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 3 Si 1.02 41.47 29.55 68.60 2.03 43.50 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 7 C -0.41 -23.28 9.49 67.92 0.64 -22.64 16 8 H 0.10 5.24 5.20 -2.91 -0.02 5.22 16 9 O -0.23 -13.32 9.76 -22.70 -0.22 -13.54 16 10 C 0.12 5.61 6.65 22.58 0.15 5.76 16 11 C -0.25 -9.75 9.17 22.39 0.21 -9.55 16 12 C -0.05 -1.30 9.69 22.25 0.22 -1.09 16 13 C -0.18 -4.45 5.25 -19.83 -0.10 -4.55 16 14 C 0.18 3.00 5.08 85.63 0.44 3.43 16 15 N -0.72 -11.64 5.74 -342.45 -1.96 -13.61 16 16 C 0.13 2.26 6.70 38.38 0.26 2.51 16 17 C 0.06 1.15 11.20 84.88 0.95 2.10 16 18 N -0.50 -10.77 10.43 -199.56 -2.08 -12.85 16 19 C 0.20 4.13 12.27 180.89 2.22 6.35 16 20 N -0.50 -10.62 10.43 -199.56 -2.08 -12.70 16 21 C 0.06 1.08 10.59 84.88 0.90 1.98 16 22 C -0.04 -1.20 9.69 22.25 0.22 -0.98 16 23 C -0.21 -8.04 9.99 22.39 0.22 -7.82 16 24 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 25 H 0.12 4.81 5.64 -2.91 -0.02 4.80 16 26 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 27 H 0.08 1.16 7.94 -2.38 -0.02 1.14 16 28 H 0.08 1.16 7.94 -2.39 -0.02 1.14 16 29 H 0.41 6.60 8.50 -92.71 -0.79 5.82 16 30 H 0.18 2.56 8.06 -2.91 -0.02 2.53 16 31 H 0.21 2.98 8.06 -2.91 -0.02 2.96 16 32 H 0.18 2.52 6.91 -2.91 -0.02 2.50 16 33 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 34 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -69.66 302.91 3.11 -66.55 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.36 Total: 22.76 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: 6.78 Total: -25.20 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -5.83 Total: -94.07 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.22 Total: -13.54 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -69.66 3.11 -66.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232086876.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.514 kcal (2) G-P(sol) polarization free energy of solvation -69.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds