Wall clock time and date at job start Mon Mar 30 2020 04:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00508 * 2 1 4 4 H 1.48503 * 109.46826 * 269.99411 * 3 2 1 5 5 H 1.48495 * 109.46990 * 29.99450 * 3 2 1 6 6 H 1.48492 * 109.47311 * 149.99462 * 3 2 1 7 7 C 1.37882 * 119.99440 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99508 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00212 * 0.27979 * 7 2 1 10 10 H 1.09002 * 109.68074 * 23.14677 * 9 7 2 11 11 C 1.53290 * 109.68428 * 262.59313 * 9 7 2 12 12 O 1.42957 * 109.22546 * 187.97133 * 11 9 7 13 13 C 1.42969 * 114.16575 * 62.58407 * 12 11 9 14 14 C 1.53298 * 109.21764 * 297.42058 * 13 12 11 15 15 N 1.47145 * 108.38749 * 52.29963 * 14 13 12 16 16 C 1.34782 * 120.97972 * 129.44262 * 15 14 13 17 17 O 1.21286 * 119.99826 * 179.28604 * 16 15 14 18 18 C 1.50697 * 119.99979 * 359.28502 * 16 15 14 19 19 H 1.09001 * 109.60080 * 313.61288 * 18 16 15 20 20 C 1.52944 * 109.60240 * 193.29156 * 18 16 15 21 21 C 1.53703 * 112.49064 * 209.96722 * 20 18 16 22 22 S 1.83393 * 104.97058 * 2.82831 * 21 20 18 23 23 C 1.55146 * 109.60408 * 73.75595 * 18 16 15 24 24 H 0.97005 * 119.99451 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.51503 * 307.89958 * 11 9 7 26 26 H 1.09002 * 109.51259 * 68.04605 * 11 9 7 27 27 H 1.08998 * 109.51720 * 177.49565 * 13 12 11 28 28 H 1.09002 * 109.55706 * 57.36434 * 13 12 11 29 29 H 1.09004 * 109.67771 * 292.57196 * 14 13 12 30 30 H 1.09004 * 109.67882 * 172.02904 * 14 13 12 31 31 H 1.08999 * 108.88683 * 330.76529 * 20 18 16 32 32 H 1.09004 * 108.88782 * 89.31340 * 20 18 16 33 33 H 1.09002 * 110.33876 * 121.70315 * 21 20 18 34 34 H 1.09006 * 110.34327 * 243.95001 * 21 20 18 35 35 H 1.08994 * 111.13357 * 279.27673 * 23 18 16 36 36 H 1.09004 * 111.13444 * 43.46359 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4468 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 -0.0053 10 1 0.2518 -2.3444 -0.4126 11 6 1.1478 -3.0422 1.4245 12 8 0.5992 -4.3619 1.3884 13 6 1.4038 -5.3111 0.6845 14 6 1.5200 -4.8842 -0.7832 15 7 1.9731 -3.4849 -0.8251 16 6 3.0190 -3.1169 -1.5914 17 8 3.3693 -1.9562 -1.6226 18 6 3.7532 -4.1478 -2.4096 19 1 3.9570 -5.0248 -1.7952 20 6 5.0707 -3.5582 -2.9153 21 6 5.5081 -4.1629 -4.2590 22 16 4.1574 -5.3135 -4.7227 23 6 2.8851 -4.5604 -3.6275 24 1 -0.4849 0.8401 -0.0004 25 1 2.1399 -3.0725 1.8750 26 1 0.4992 -2.3943 2.0142 27 1 0.9394 -6.2956 0.7417 28 1 2.3970 -5.3506 1.1319 29 1 0.5478 -4.9701 -1.2685 30 1 2.2433 -5.5198 -1.2942 31 1 4.9524 -2.4812 -3.0348 32 1 5.8488 -3.7471 -2.1757 33 1 5.6138 -3.3802 -5.0102 34 1 6.4457 -4.7065 -4.1426 35 1 2.1297 -5.2923 -3.3417 36 1 2.4280 -3.6895 -4.0974 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259739233.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:22 Heat of formation + Delta-G solvation = -60.371294 kcal Electronic energy + Delta-G solvation = -19952.805255 eV Core-core repulsion = 16949.947404 eV Total energy + Delta-G solvation = -3002.857851 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.79321 -37.72102 -35.26952 -33.99704 -32.95177 -30.40566 -29.66818 -27.29451 -25.26898 -24.94764 -22.73997 -22.15084 -20.15590 -18.42159 -17.54875 -16.53320 -16.00037 -15.47051 -15.40566 -15.09822 -14.54464 -14.27348 -14.14198 -13.87489 -13.49528 -13.36723 -12.79903 -12.28611 -12.20590 -11.98360 -11.72463 -11.38673 -11.36312 -11.04241 -10.88716 -10.70621 -10.56483 -10.37573 -10.15940 -9.96812 -9.56028 -9.22606 -8.68010 -7.99286 -7.72875 -7.42743 -6.05391 -3.96557 1.83013 2.25748 3.35045 3.41167 3.42384 3.46722 3.73942 4.42019 4.54798 4.64718 4.79770 4.89518 5.01476 5.13634 5.24472 5.30760 5.32501 5.45111 5.49156 5.53845 5.69314 5.73961 5.92734 6.04802 6.09682 6.28129 6.30121 6.56457 6.74284 7.29123 7.52979 7.75434 7.98428 8.03157 8.54465 9.07113 9.16412 9.60172 11.04297 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.017581 B = 0.007515 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.248639 B = 3725.063700 C = 4915.535950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.058 3.942 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.485 4.485 8 H 0.087 0.913 9 C 0.230 3.770 10 H 0.069 0.931 11 C 0.059 3.941 12 O -0.397 6.397 13 C 0.053 3.947 14 C 0.067 3.933 15 N -0.607 5.607 16 C 0.516 3.484 17 O -0.491 6.491 18 C -0.120 4.120 19 H 0.097 0.903 20 C -0.122 4.122 21 C -0.062 4.062 22 S -0.309 6.309 23 C -0.050 4.050 24 H 0.262 0.738 25 H 0.037 0.963 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.045 0.955 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.438 -11.138 -3.967 13.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.523 4.523 8 H 0.105 0.895 9 C 0.131 3.869 10 H 0.086 0.914 11 C -0.018 4.018 12 O -0.315 6.315 13 C -0.025 4.025 14 C -0.058 4.058 15 N -0.342 5.342 16 C 0.299 3.701 17 O -0.364 6.364 18 C -0.144 4.144 19 H 0.115 0.885 20 C -0.161 4.161 21 C -0.210 4.210 22 S -0.082 6.082 23 C -0.198 4.198 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.117 0.883 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.127 0.873 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.275 -11.340 -4.672 13.777 hybrid contribution 0.621 1.695 0.525 1.880 sum 6.897 -9.645 -4.147 12.561 Atomic orbital electron populations 1.69927 1.05990 1.26953 1.51228 1.24949 0.94793 0.99594 0.94997 0.86356 0.79532 0.82573 0.78057 1.20763 1.21664 1.19950 1.21438 0.94564 0.88302 1.47968 0.89525 1.19901 0.94776 0.86122 0.86103 0.91359 1.23487 0.97561 0.80777 0.99950 1.87878 1.48132 1.20567 1.74971 1.22759 0.95589 0.92953 0.91244 1.22421 1.00482 0.84800 0.98091 1.48725 1.31876 1.08175 1.45403 1.19973 0.80784 0.88811 0.80533 1.90804 1.65367 1.18109 1.62141 1.22377 0.94998 0.99983 0.97020 0.88479 1.21847 0.95668 1.03529 0.95012 1.23928 0.98287 0.99226 0.99544 1.87663 1.11626 1.46845 1.62108 1.24331 0.97683 1.03134 0.94628 0.92856 0.94463 0.88338 0.89096 0.93671 0.91331 0.90294 0.88427 0.90335 0.89183 0.88542 0.87282 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 12.77 55.43 0.71 -25.24 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.39 29.54 -169.99 -5.02 17.37 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.48 -13.18 6.28 -34.44 -0.22 -13.40 16 8 H 0.09 2.46 5.73 -52.49 -0.30 2.16 16 9 C 0.23 5.59 3.20 -68.58 -0.22 5.37 16 10 H 0.07 1.89 7.27 -51.93 -0.38 1.51 16 11 C 0.06 1.30 6.27 37.31 0.23 1.53 16 12 O -0.40 -7.77 10.74 -35.23 -0.38 -8.15 16 13 C 0.05 0.80 6.99 37.31 0.26 1.06 16 14 C 0.07 1.01 5.83 -3.54 -0.02 0.99 16 15 N -0.61 -12.16 3.02 -166.06 -0.50 -12.66 16 16 C 0.52 10.21 6.83 -10.98 -0.08 10.14 16 17 O -0.49 -11.85 11.43 5.55 0.06 -11.79 16 18 C -0.12 -1.75 2.01 -90.67 -0.18 -1.93 16 19 H 0.10 1.25 6.94 -51.93 -0.36 0.89 16 20 C -0.12 -1.65 5.72 -26.39 -0.15 -1.80 16 21 C -0.06 -0.71 7.38 37.52 0.28 -0.43 16 22 S -0.31 -4.02 23.23 -107.50 -2.50 -6.52 16 23 C -0.05 -0.67 6.40 38.29 0.25 -0.42 16 24 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.04 0.80 8.13 -51.93 -0.42 0.38 16 26 H 0.10 2.27 8.14 -51.93 -0.42 1.84 16 27 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.08 0.95 4.96 -51.93 -0.26 0.69 16 31 H 0.10 1.56 6.72 -51.93 -0.35 1.21 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.11 1.30 6.91 -51.93 -0.36 0.94 16 36 H 0.10 1.44 8.10 -51.93 -0.42 1.02 16 LS Contribution 294.49 15.07 4.44 4.44 Total: -1.00 -30.80 294.49 -8.07 -38.87 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -4.94 Total: 1.05 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 0.05 Total: 2.62 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.21 Total: -37.89 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.31 Total: -19.94 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: -4.02 SS G_CDS: -2.50 Total: -6.52 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.80 -8.07 -38.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259739233.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.497 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds