Wall clock time and date at job start Mon Mar 30 2020 04:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00508 * 2 1 4 4 H 1.48503 * 109.46826 * 269.99411 * 3 2 1 5 5 H 1.48495 * 109.46990 * 29.99450 * 3 2 1 6 6 H 1.48492 * 109.47311 * 149.99462 * 3 2 1 7 7 C 1.37882 * 119.99440 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99508 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00212 * 0.27979 * 7 2 1 10 10 H 1.09002 * 109.68074 * 23.14677 * 9 7 2 11 11 C 1.53290 * 109.68428 * 262.59313 * 9 7 2 12 12 O 1.42957 * 109.22546 * 187.97133 * 11 9 7 13 13 C 1.42969 * 114.16575 * 62.58407 * 12 11 9 14 14 C 1.53298 * 109.21764 * 297.42058 * 13 12 11 15 15 N 1.47145 * 108.38749 * 52.29963 * 14 13 12 16 16 C 1.34782 * 120.97972 * 129.44262 * 15 14 13 17 17 O 1.21286 * 119.99826 * 179.28604 * 16 15 14 18 18 C 1.50697 * 119.99979 * 359.28502 * 16 15 14 19 19 H 1.09001 * 109.60080 * 313.61288 * 18 16 15 20 20 C 1.52944 * 109.60240 * 193.29156 * 18 16 15 21 21 C 1.53703 * 112.49064 * 209.96722 * 20 18 16 22 22 S 1.83393 * 104.97058 * 2.82831 * 21 20 18 23 23 C 1.55146 * 109.60408 * 73.75595 * 18 16 15 24 24 H 0.97005 * 119.99451 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.51503 * 307.89958 * 11 9 7 26 26 H 1.09002 * 109.51259 * 68.04605 * 11 9 7 27 27 H 1.08998 * 109.51720 * 177.49565 * 13 12 11 28 28 H 1.09002 * 109.55706 * 57.36434 * 13 12 11 29 29 H 1.09004 * 109.67771 * 292.57196 * 14 13 12 30 30 H 1.09004 * 109.67882 * 172.02904 * 14 13 12 31 31 H 1.08999 * 108.88683 * 330.76529 * 20 18 16 32 32 H 1.09004 * 108.88782 * 89.31340 * 20 18 16 33 33 H 1.09002 * 110.33876 * 121.70315 * 21 20 18 34 34 H 1.09006 * 110.34327 * 243.95001 * 21 20 18 35 35 H 1.08994 * 111.13357 * 279.27673 * 23 18 16 36 36 H 1.09004 * 111.13444 * 43.46359 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4468 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 -0.0053 10 1 0.2518 -2.3444 -0.4126 11 6 1.1478 -3.0422 1.4245 12 8 0.5992 -4.3619 1.3884 13 6 1.4038 -5.3111 0.6845 14 6 1.5200 -4.8842 -0.7832 15 7 1.9731 -3.4849 -0.8251 16 6 3.0190 -3.1169 -1.5914 17 8 3.3693 -1.9562 -1.6226 18 6 3.7532 -4.1478 -2.4096 19 1 3.9570 -5.0248 -1.7952 20 6 5.0707 -3.5582 -2.9153 21 6 5.5081 -4.1629 -4.2590 22 16 4.1574 -5.3135 -4.7227 23 6 2.8851 -4.5604 -3.6275 24 1 -0.4849 0.8401 -0.0004 25 1 2.1399 -3.0725 1.8750 26 1 0.4992 -2.3943 2.0142 27 1 0.9394 -6.2956 0.7417 28 1 2.3970 -5.3506 1.1319 29 1 0.5478 -4.9701 -1.2685 30 1 2.2433 -5.5198 -1.2942 31 1 4.9524 -2.4812 -3.0348 32 1 5.8488 -3.7471 -2.1757 33 1 5.6138 -3.3802 -5.0102 34 1 6.4457 -4.7065 -4.1426 35 1 2.1297 -5.2923 -3.3417 36 1 2.4280 -3.6895 -4.0974 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259739233.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:22 Heat of formation + Delta-G solvation = -80.957397 kcal Electronic energy + Delta-G solvation = -19953.697935 eV Core-core repulsion = 16949.947404 eV Total energy + Delta-G solvation = -3003.750531 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.33793 -39.22998 -36.58946 -35.63811 -34.82328 -32.08436 -30.79668 -28.86065 -26.85054 -26.42622 -24.33470 -23.48694 -21.58092 -19.86916 -19.29844 -17.78972 -17.51848 -17.06237 -16.80933 -16.61197 -16.18848 -15.75138 -15.46550 -15.45400 -14.88687 -14.72489 -14.17284 -14.00394 -13.64044 -13.14375 -13.04344 -12.93845 -12.83342 -12.71465 -12.57937 -12.34080 -12.00054 -11.90179 -11.62254 -11.37264 -11.12223 -10.89440 -10.73331 -9.76033 -9.13899 -8.75473 -8.16743 -6.10215 0.80162 1.22981 1.35256 1.38569 1.48286 1.92950 2.21559 2.43866 3.06414 3.20696 3.48743 3.63085 3.75076 3.98940 4.04385 4.09126 4.15157 4.28587 4.33279 4.43905 4.46990 4.65075 4.72392 4.73516 4.84112 4.91303 4.98894 5.04413 5.16879 5.39211 5.67530 5.89523 5.96733 6.39353 6.84072 6.97377 7.42628 7.63409 8.93132 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.017581 B = 0.007515 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.248639 B = 3725.063700 C = 4915.535950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.007 3.993 3 Si 0.957 3.043 4 H -0.289 1.289 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.483 4.483 8 H 0.073 0.927 9 C 0.232 3.768 10 H 0.027 0.973 11 C 0.077 3.923 12 O -0.408 6.408 13 C 0.044 3.956 14 C 0.063 3.937 15 N -0.613 5.613 16 C 0.507 3.493 17 O -0.545 6.545 18 C -0.104 4.104 19 H 0.127 0.873 20 C -0.121 4.121 21 C -0.054 4.054 22 S -0.306 6.306 23 C -0.049 4.049 24 H 0.261 0.739 25 H 0.040 0.960 26 H 0.077 0.923 27 H 0.135 0.865 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.121 0.879 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.909 -13.784 -4.414 16.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.191 4.191 3 Si 0.784 3.216 4 H -0.216 1.216 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.522 4.522 8 H 0.091 0.909 9 C 0.130 3.870 10 H 0.045 0.955 11 C 0.000 4.000 12 O -0.327 6.327 13 C -0.033 4.033 14 C -0.059 4.059 15 N -0.347 5.347 16 C 0.293 3.707 17 O -0.422 6.422 18 C -0.127 4.127 19 H 0.145 0.855 20 C -0.160 4.160 21 C -0.202 4.202 22 S -0.079 6.079 23 C -0.198 4.198 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.152 0.848 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.138 0.862 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.755 -14.039 -5.124 16.837 hybrid contribution 0.202 2.379 0.591 2.460 sum 7.957 -11.660 -4.533 14.826 Atomic orbital electron populations 1.70029 1.06957 1.27272 1.53287 1.25599 0.95516 1.02340 0.95610 0.85569 0.78721 0.79837 0.77486 1.21603 1.20607 1.19551 1.21602 0.94036 0.89915 1.46606 0.90907 1.19530 0.92771 0.86739 0.87911 0.95483 1.22972 0.97173 0.82089 0.97795 1.87852 1.49240 1.19764 1.75834 1.23177 0.96282 0.93434 0.90398 1.22729 1.01839 0.82318 0.99023 1.48631 1.31696 1.09619 1.44777 1.20812 0.80466 0.89356 0.80075 1.90767 1.66743 1.20815 1.63833 1.22305 0.94722 0.98909 0.96806 0.85469 1.21829 0.95704 1.01721 0.96731 1.23969 0.98790 0.99270 0.98188 1.87712 1.11598 1.46577 1.62058 1.24283 0.98259 1.03028 0.94195 0.93050 0.94123 0.90492 0.84754 0.92544 0.90943 0.86155 0.91475 0.88805 0.88822 0.85837 0.85225 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.90 12.77 21.45 0.27 -55.63 16 2 C 0.01 0.39 5.46 84.66 0.46 0.85 16 3 Si 0.96 47.35 29.54 68.60 2.03 49.37 16 4 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 5 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.48 -27.18 6.28 25.60 0.16 -27.02 16 8 H 0.07 4.28 5.73 -2.95 -0.02 4.26 16 9 C 0.23 11.55 3.20 44.22 0.14 11.69 16 10 H 0.03 1.57 7.27 -2.39 -0.02 1.55 16 11 C 0.08 3.43 6.27 72.08 0.45 3.88 16 12 O -0.41 -15.42 10.74 -148.98 -1.60 -17.02 16 13 C 0.04 1.17 6.99 72.08 0.50 1.68 16 14 C 0.06 1.73 5.83 86.36 0.50 2.24 16 15 N -0.61 -24.15 3.02 -797.68 -2.41 -26.56 16 16 C 0.51 19.83 6.83 87.66 0.60 20.43 16 17 O -0.54 -26.98 11.43 -3.05 -0.03 -27.02 16 18 C -0.10 -2.77 2.01 -10.82 -0.02 -2.79 16 19 H 0.13 2.67 6.94 -2.39 -0.02 2.65 16 20 C -0.12 -3.04 5.72 30.81 0.18 -2.86 16 21 C -0.05 -1.09 7.38 72.22 0.53 -0.56 16 22 S -0.31 -6.98 23.23 -56.49 -1.31 -8.29 16 23 C -0.05 -1.21 6.40 72.72 0.47 -0.74 16 24 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 25 H 0.04 1.75 8.13 -2.38 -0.02 1.73 16 26 H 0.08 3.68 8.14 -2.39 -0.02 3.66 16 27 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.12 2.29 4.96 -2.39 -0.01 2.28 16 31 H 0.07 2.14 6.72 -2.39 -0.02 2.13 16 32 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.12 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.13 2.61 6.91 -2.39 -0.02 2.59 16 36 H 0.07 2.18 8.10 -2.38 -0.02 2.17 16 Total: -1.00 -70.45 294.49 2.00 -68.45 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 1.08 Total: 9.90 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 3.98 Total: 6.80 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -2.13 Total: -82.19 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -1.64 Total: -44.04 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.37 kcal Atomic # 16 Polarization: -6.98 SS G_CDS: -1.31 Total: -8.29 kcal Total: -70.45 2.00 -68.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259739233.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.504 kcal (2) G-P(sol) polarization free energy of solvation -70.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds