Wall clock time and date at job start Mon Mar 30 2020 04:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00085 * 2 1 4 4 H 1.48497 * 109.46890 * 273.83289 * 3 2 1 5 5 H 1.48500 * 109.47326 * 33.83262 * 3 2 1 6 6 H 1.48502 * 109.47212 * 153.83430 * 3 2 1 7 7 C 1.37877 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99718 * 4.12104 * 7 2 1 9 9 C 1.50699 * 119.99950 * 184.11629 * 7 2 1 10 10 H 1.08999 * 109.67864 * 355.38415 * 9 7 2 11 11 C 1.53292 * 109.68252 * 115.90778 * 9 7 2 12 12 O 1.42956 * 109.26436 * 171.99891 * 11 9 7 13 13 C 1.42950 * 114.17419 * 297.49912 * 12 11 9 14 14 C 1.53299 * 109.26341 * 62.49601 * 13 12 11 15 15 N 1.47149 * 108.38624 * 307.72660 * 14 13 12 16 16 C 1.34776 * 120.98101 * 230.55935 * 15 14 13 17 17 O 1.21284 * 119.99653 * 174.22548 * 16 15 14 18 18 C 1.50701 * 120.00219 * 354.21670 * 16 15 14 19 19 H 1.08996 * 109.60178 * 58.88752 * 18 16 15 20 20 C 1.53859 * 109.61053 * 179.05017 * 18 16 15 21 21 C 1.55133 * 106.89820 * 167.17779 * 20 18 16 22 22 S 1.83461 * 102.20300 * 317.88246 * 21 20 18 23 23 C 1.54278 * 109.60788 * 298.55357 * 18 16 15 24 24 H 0.97003 * 119.99935 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.50656 * 291.94790 * 11 9 7 26 26 H 1.08998 * 109.51316 * 52.04672 * 11 9 7 27 27 H 1.09004 * 109.47138 * 302.57751 * 13 12 11 28 28 H 1.08998 * 109.51507 * 182.44622 * 13 12 11 29 29 H 1.09003 * 109.67991 * 188.00363 * 14 13 12 30 30 H 1.09002 * 109.70852 * 67.46914 * 14 13 12 31 31 H 1.09001 * 109.97027 * 286.53690 * 20 18 16 32 32 H 1.08997 * 109.97341 * 47.81655 * 20 18 16 33 33 H 1.09002 * 110.85636 * 199.70651 * 21 20 18 34 34 H 1.08995 * 110.85623 * 76.06203 * 21 20 18 35 35 H 1.08998 * 110.39996 * 330.91224 * 23 18 16 36 36 H 1.09000 * 110.40328 * 93.21616 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4156 2.0931 -1.3969 5 1 1.4895 2.6279 0.7795 6 1 3.5849 1.4181 0.6174 7 6 2.0045 -1.1941 0.0005 8 1 1.4665 -2.1281 -0.0663 9 6 3.5085 -1.1958 0.0942 10 1 3.8789 -0.1709 0.0709 11 6 3.9438 -1.8726 1.3989 12 8 5.3639 -2.0373 1.3939 13 6 5.8512 -2.8846 0.3508 14 6 5.5135 -2.2597 -1.0077 15 7 4.0744 -1.9537 -1.0331 16 6 3.2975 -2.3563 -2.0581 17 8 2.0974 -2.1870 -2.0123 18 6 3.9200 -3.0165 -3.2613 19 1 4.4545 -3.9141 -2.9503 20 6 2.8204 -3.3975 -4.2679 21 6 3.5324 -3.7606 -5.5975 22 16 4.8150 -2.4546 -5.7198 23 6 4.9015 -2.0380 -3.9390 24 1 -0.4850 0.8401 0.0004 25 1 3.6523 -1.2516 2.2460 26 1 3.4644 -2.8481 1.4806 27 1 5.3794 -3.8642 0.4282 28 1 6.9319 -2.9918 0.4437 29 1 5.7534 -2.9631 -1.8051 30 1 6.0864 -1.3422 -1.1428 31 1 2.2595 -4.2563 -3.8992 32 1 2.1492 -2.5529 -4.4235 33 1 2.8393 -3.7037 -6.4369 34 1 3.9890 -4.7484 -5.5360 35 1 4.5857 -1.0079 -3.7740 36 1 5.9121 -2.1902 -3.5600 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259739236.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:25 Heat of formation + Delta-G solvation = -58.901301 kcal Electronic energy + Delta-G solvation = -20085.920067 eV Core-core repulsion = 17083.125960 eV Total energy + Delta-G solvation = -3002.794107 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.83447 -37.79255 -35.29897 -34.06956 -32.85869 -30.82791 -29.63787 -27.52798 -25.09642 -25.07986 -22.58522 -22.22969 -20.30119 -18.40731 -17.55393 -16.57159 -16.39269 -15.67249 -15.47737 -15.14718 -14.58017 -14.47042 -14.12073 -13.80064 -13.52583 -13.10895 -12.84015 -12.57110 -12.23342 -12.04185 -11.87833 -11.60229 -11.44446 -11.20745 -10.98392 -10.84621 -10.55658 -10.22218 -10.12762 -9.78566 -9.65386 -9.41401 -8.78567 -8.14234 -7.69895 -7.55151 -6.05165 -3.92158 1.82245 2.33995 3.22869 3.30604 3.34549 3.47370 3.65512 4.33264 4.38009 4.63299 4.76893 4.85547 5.03261 5.16136 5.18499 5.21651 5.28504 5.40898 5.46043 5.51861 5.63188 5.71701 5.82929 5.99006 6.02211 6.09099 6.26946 6.30815 6.44759 6.78102 7.24865 7.45221 7.72370 8.28254 8.53523 9.06678 9.20583 9.51046 11.07129 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.017705 B = 0.007946 C = 0.006460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.083863 B = 3522.875679 C = 4333.332492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.075 3.925 3 Si 0.863 3.137 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.468 4.468 8 H 0.090 0.910 9 C 0.197 3.803 10 H 0.052 0.948 11 C 0.056 3.944 12 O -0.397 6.397 13 C 0.053 3.947 14 C 0.065 3.935 15 N -0.615 5.615 16 C 0.512 3.488 17 O -0.466 6.466 18 C -0.126 4.126 19 H 0.095 0.905 20 C -0.107 4.107 21 C -0.068 4.068 22 S -0.305 6.305 23 C -0.057 4.057 24 H 0.263 0.737 25 H 0.096 0.904 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.612 -7.085 -5.821 14.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.127 4.127 3 Si 0.691 3.309 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.506 4.506 8 H 0.108 0.892 9 C 0.097 3.903 10 H 0.069 0.931 11 C -0.021 4.021 12 O -0.316 6.316 13 C -0.025 4.025 14 C -0.059 4.059 15 N -0.352 5.352 16 C 0.295 3.705 17 O -0.336 6.336 18 C -0.149 4.149 19 H 0.113 0.887 20 C -0.146 4.146 21 C -0.216 4.216 22 S -0.079 6.079 23 C -0.206 4.206 24 H 0.073 0.927 25 H 0.114 0.886 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.452 -6.331 -6.605 14.658 hybrid contribution -0.116 0.349 0.612 0.714 sum 11.336 -5.982 -5.993 14.149 Atomic orbital electron populations 1.69861 1.06075 1.26611 1.49719 1.24936 0.94749 0.98152 0.94913 0.87057 0.80409 0.84799 0.78623 1.20429 1.21102 1.18657 1.20792 0.86743 0.95707 1.47377 0.89208 1.20371 0.96092 0.91470 0.82318 0.93061 1.23440 0.78143 1.00476 0.99999 1.87857 1.24232 1.68706 1.50791 1.22786 0.99127 0.93238 0.87365 1.22446 0.84560 1.00504 0.98398 1.48985 1.06568 1.56705 1.22939 1.20054 0.87461 0.80176 0.82845 1.90972 1.13316 1.51244 1.78063 1.22391 0.96808 0.98974 0.96772 0.88653 1.22364 0.97470 1.03869 0.90927 1.24278 0.97560 0.98404 1.01332 1.87438 1.55734 1.50754 1.14004 1.24053 1.02090 1.02984 0.91440 0.92674 0.88577 0.93374 0.93400 0.88978 0.90220 0.91631 0.89315 0.88908 0.87913 0.89273 0.88533 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.97 13.96 55.43 0.77 -26.20 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 3 Si 0.86 21.22 27.54 -169.99 -4.68 16.54 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.26 -6.05 5.98 56.52 0.34 -5.71 16 7 C -0.47 -12.81 6.11 -34.44 -0.21 -13.02 16 8 H 0.09 2.78 7.00 -52.49 -0.37 2.42 16 9 C 0.20 4.49 3.03 -68.57 -0.21 4.28 16 10 H 0.05 1.23 4.33 -51.93 -0.22 1.00 16 11 C 0.06 1.14 6.27 37.31 0.23 1.37 16 12 O -0.40 -7.19 10.74 -35.23 -0.38 -7.57 16 13 C 0.05 0.75 6.98 37.31 0.26 1.01 16 14 C 0.07 0.94 5.53 -3.53 -0.02 0.92 16 15 N -0.61 -11.98 3.02 -166.05 -0.50 -12.48 16 16 C 0.51 10.26 6.84 -10.99 -0.08 10.19 16 17 O -0.47 -11.78 12.18 5.55 0.07 -11.71 16 18 C -0.13 -1.85 2.09 -90.65 -0.19 -2.04 16 19 H 0.10 1.18 7.37 -51.93 -0.38 0.80 16 20 C -0.11 -1.52 5.26 -25.15 -0.13 -1.65 16 21 C -0.07 -0.78 7.38 38.29 0.28 -0.49 16 22 S -0.30 -4.13 23.26 -107.50 -2.50 -6.63 16 23 C -0.06 -0.78 5.85 37.83 0.22 -0.56 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.10 1.91 8.14 -51.93 -0.42 1.48 16 26 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 0.91 4.90 -51.93 -0.25 0.65 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.09 1.56 7.70 -51.93 -0.40 1.16 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 1.51 7.89 -51.93 -0.41 1.10 16 36 H 0.10 1.13 6.70 -51.93 -0.35 0.78 16 LS Contribution 291.01 15.07 4.39 4.39 Total: -1.00 -32.35 291.01 -7.73 -40.09 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -4.97 Total: 1.52 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 0.07 Total: 2.06 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.27 Total: -38.68 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.31 Total: -19.28 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.68 Total: 16.54 kcal Atomic # 16 Polarization: -4.13 SS G_CDS: -2.50 Total: -6.63 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.35 -7.73 -40.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259739236.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.813 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds