Wall clock time and date at job start Mon Mar 30 2020 04:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00085 * 2 1 4 4 H 1.48497 * 109.46890 * 273.83289 * 3 2 1 5 5 H 1.48500 * 109.47326 * 33.83262 * 3 2 1 6 6 H 1.48502 * 109.47212 * 153.83430 * 3 2 1 7 7 C 1.37877 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99718 * 4.12104 * 7 2 1 9 9 C 1.50699 * 119.99950 * 184.11629 * 7 2 1 10 10 H 1.08999 * 109.67864 * 355.38415 * 9 7 2 11 11 C 1.53292 * 109.68252 * 115.90778 * 9 7 2 12 12 O 1.42956 * 109.26436 * 171.99891 * 11 9 7 13 13 C 1.42950 * 114.17419 * 297.49912 * 12 11 9 14 14 C 1.53299 * 109.26341 * 62.49601 * 13 12 11 15 15 N 1.47149 * 108.38624 * 307.72660 * 14 13 12 16 16 C 1.34776 * 120.98101 * 230.55935 * 15 14 13 17 17 O 1.21284 * 119.99653 * 174.22548 * 16 15 14 18 18 C 1.50701 * 120.00219 * 354.21670 * 16 15 14 19 19 H 1.08996 * 109.60178 * 58.88752 * 18 16 15 20 20 C 1.53859 * 109.61053 * 179.05017 * 18 16 15 21 21 C 1.55133 * 106.89820 * 167.17779 * 20 18 16 22 22 S 1.83461 * 102.20300 * 317.88246 * 21 20 18 23 23 C 1.54278 * 109.60788 * 298.55357 * 18 16 15 24 24 H 0.97003 * 119.99935 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.50656 * 291.94790 * 11 9 7 26 26 H 1.08998 * 109.51316 * 52.04672 * 11 9 7 27 27 H 1.09004 * 109.47138 * 302.57751 * 13 12 11 28 28 H 1.08998 * 109.51507 * 182.44622 * 13 12 11 29 29 H 1.09003 * 109.67991 * 188.00363 * 14 13 12 30 30 H 1.09002 * 109.70852 * 67.46914 * 14 13 12 31 31 H 1.09001 * 109.97027 * 286.53690 * 20 18 16 32 32 H 1.08997 * 109.97341 * 47.81655 * 20 18 16 33 33 H 1.09002 * 110.85636 * 199.70651 * 21 20 18 34 34 H 1.08995 * 110.85623 * 76.06203 * 21 20 18 35 35 H 1.08998 * 110.39996 * 330.91224 * 23 18 16 36 36 H 1.09000 * 110.40328 * 93.21616 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4156 2.0931 -1.3969 5 1 1.4895 2.6279 0.7795 6 1 3.5849 1.4181 0.6174 7 6 2.0045 -1.1941 0.0005 8 1 1.4665 -2.1281 -0.0663 9 6 3.5085 -1.1958 0.0942 10 1 3.8789 -0.1709 0.0709 11 6 3.9438 -1.8726 1.3989 12 8 5.3639 -2.0373 1.3939 13 6 5.8512 -2.8846 0.3508 14 6 5.5135 -2.2597 -1.0077 15 7 4.0744 -1.9537 -1.0331 16 6 3.2975 -2.3563 -2.0581 17 8 2.0974 -2.1870 -2.0123 18 6 3.9200 -3.0165 -3.2613 19 1 4.4545 -3.9141 -2.9503 20 6 2.8204 -3.3975 -4.2679 21 6 3.5324 -3.7606 -5.5975 22 16 4.8150 -2.4546 -5.7198 23 6 4.9015 -2.0380 -3.9390 24 1 -0.4850 0.8401 0.0004 25 1 3.6523 -1.2516 2.2460 26 1 3.4644 -2.8481 1.4806 27 1 5.3794 -3.8642 0.4282 28 1 6.9319 -2.9918 0.4437 29 1 5.7534 -2.9631 -1.8051 30 1 6.0864 -1.3422 -1.1428 31 1 2.2595 -4.2563 -3.8992 32 1 2.1492 -2.5529 -4.4235 33 1 2.8393 -3.7037 -6.4369 34 1 3.9890 -4.7484 -5.5360 35 1 4.5857 -1.0079 -3.7740 36 1 5.9121 -2.1902 -3.5600 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259739236.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:24 Heat of formation + Delta-G solvation = -82.376931 kcal Electronic energy + Delta-G solvation = -20086.938047 eV Core-core repulsion = 17083.125960 eV Total energy + Delta-G solvation = -3003.812087 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.36464 -39.24731 -36.65154 -35.68140 -34.73681 -32.53266 -30.75519 -29.03402 -26.90046 -26.25219 -24.12771 -23.52588 -21.72640 -19.88593 -19.48496 -17.89313 -17.70177 -17.16722 -16.84960 -16.59826 -16.20451 -15.85719 -15.42746 -15.40445 -14.92005 -14.59665 -14.46923 -14.15507 -13.57370 -13.28750 -13.17531 -12.98983 -12.88381 -12.67202 -12.61579 -12.18407 -11.99373 -11.83632 -11.73213 -11.43700 -11.11523 -10.95794 -10.83522 -10.00411 -9.18934 -8.73299 -8.20913 -6.09612 0.78404 1.26312 1.29252 1.30636 1.37470 1.95412 2.15507 2.31965 2.99901 3.18824 3.47955 3.61916 3.67838 3.94892 4.01475 4.04580 4.17576 4.24293 4.29964 4.37415 4.51051 4.54750 4.61614 4.66117 4.77047 4.83022 4.90912 4.96473 5.07060 5.12465 5.35067 5.76834 6.19020 6.37582 6.75246 6.86367 7.34883 7.64178 8.96243 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.017705 B = 0.007946 C = 0.006460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.083863 B = 3522.875679 C = 4333.332492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.009 3.991 3 Si 0.927 3.073 4 H -0.286 1.286 5 H -0.282 1.282 6 H -0.233 1.233 7 C -0.452 4.452 8 H 0.038 0.962 9 C 0.196 3.804 10 H 0.047 0.953 11 C 0.069 3.931 12 O -0.401 6.401 13 C 0.044 3.956 14 C 0.061 3.939 15 N -0.620 5.620 16 C 0.502 3.498 17 O -0.533 6.533 18 C -0.110 4.110 19 H 0.134 0.866 20 C -0.109 4.109 21 C -0.051 4.051 22 S -0.321 6.321 23 C -0.052 4.052 24 H 0.261 0.739 25 H 0.095 0.905 26 H 0.039 0.961 27 H 0.052 0.948 28 H 0.138 0.862 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.071 0.929 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.782 -8.155 -6.621 18.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.188 4.188 3 Si 0.753 3.247 4 H -0.212 1.212 5 H -0.208 1.208 6 H -0.157 1.157 7 C -0.491 4.491 8 H 0.056 0.944 9 C 0.095 3.905 10 H 0.064 0.936 11 C -0.008 4.008 12 O -0.320 6.320 13 C -0.033 4.033 14 C -0.061 4.061 15 N -0.355 5.355 16 C 0.288 3.712 17 O -0.408 6.408 18 C -0.133 4.133 19 H 0.151 0.849 20 C -0.148 4.148 21 C -0.199 4.199 22 S -0.096 6.096 23 C -0.200 4.200 24 H 0.070 0.930 25 H 0.113 0.887 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.156 0.844 29 H 0.137 0.863 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.139 0.861 35 H 0.089 0.911 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 15.709 -7.428 -7.406 18.889 hybrid contribution -1.339 0.511 0.789 1.636 sum 14.370 -6.917 -6.616 17.266 Atomic orbital electron populations 1.70033 1.08064 1.27220 1.53384 1.25741 0.95477 1.02035 0.95528 0.86029 0.80311 0.80173 0.78205 1.21233 1.20790 1.15657 1.20774 0.89349 0.93493 1.45481 0.94368 1.20159 0.93216 0.92340 0.84806 0.93570 1.23028 0.79870 0.99673 0.98257 1.87853 1.22012 1.69701 1.52408 1.23193 1.01691 0.92577 0.85847 1.22816 0.80752 1.02360 1.00190 1.48773 1.09149 1.55863 1.21742 1.20910 0.86940 0.79332 0.84056 1.90957 1.16351 1.54107 1.79398 1.22281 0.97070 0.99926 0.94009 0.84860 1.22318 0.97234 1.02621 0.92673 1.24316 0.96827 0.98951 0.99776 1.87562 1.56221 1.52061 1.13737 1.24015 1.03200 1.01138 0.91653 0.93039 0.88669 0.94224 0.92927 0.84417 0.86274 0.90186 0.88983 0.92643 0.86801 0.86147 0.91066 0.84934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.33 13.96 21.45 0.30 -61.03 16 2 C 0.01 0.52 5.47 84.65 0.46 0.99 16 3 Si 0.93 45.05 27.54 68.60 1.89 46.94 16 4 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 5 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.23 -10.10 5.98 99.48 0.60 -9.51 16 7 C -0.45 -25.95 6.11 25.60 0.16 -25.79 16 8 H 0.04 2.55 7.00 -2.91 -0.02 2.53 16 9 C 0.20 8.91 3.03 44.22 0.13 9.04 16 10 H 0.05 2.15 4.33 -2.39 -0.01 2.14 16 11 C 0.07 2.74 6.27 72.08 0.45 3.19 16 12 O -0.40 -13.20 10.74 -148.98 -1.60 -14.80 16 13 C 0.04 1.03 6.98 72.08 0.50 1.53 16 14 C 0.06 1.48 5.53 86.36 0.48 1.96 16 15 N -0.62 -23.19 3.02 -797.66 -2.41 -25.59 16 16 C 0.50 20.01 6.84 87.66 0.60 20.61 16 17 O -0.53 -28.42 12.18 -3.04 -0.04 -28.46 16 18 C -0.11 -2.96 2.09 -10.82 -0.02 -2.98 16 19 H 0.13 2.63 7.37 -2.39 -0.02 2.61 16 20 C -0.11 -2.97 5.26 31.62 0.17 -2.80 16 21 C -0.05 -1.01 7.38 72.71 0.54 -0.48 16 22 S -0.32 -7.75 23.26 -56.49 -1.31 -9.06 16 23 C -0.05 -1.25 5.85 72.42 0.42 -0.83 16 24 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 25 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 26 H 0.04 1.61 8.13 -2.39 -0.02 1.59 16 27 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.12 1.96 4.90 -2.39 -0.01 1.95 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.05 1.93 7.70 -2.39 -0.02 1.91 16 33 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 2.11 7.89 -2.39 -0.02 2.09 16 36 H 0.13 2.30 6.70 -2.39 -0.02 2.28 16 Total: -1.00 -77.71 291.01 1.69 -76.02 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.97 Total: 11.54 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 3.89 Total: 4.44 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -2.11 Total: -86.62 kcal Atomic # 8 Polarization: -41.62 SS G_CDS: -1.64 Total: -43.26 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.89 Total: 46.94 kcal Atomic # 16 Polarization: -7.75 SS G_CDS: -1.31 Total: -9.06 kcal Total: -77.71 1.69 -76.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259739236.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.358 kcal (2) G-P(sol) polarization free energy of solvation -77.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds