Wall clock time and date at job start Mon Mar 30 2020 04:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00262 * 2 1 4 4 H 1.48503 * 109.47333 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47088 * 299.99931 * 3 2 1 6 6 H 1.48497 * 109.47387 * 59.99921 * 3 2 1 7 7 C 1.37878 * 119.99546 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99950 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00231 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.68361 * 51.50413 * 9 7 2 11 11 C 1.53293 * 109.68219 * 290.94621 * 9 7 2 12 12 O 1.42964 * 109.22466 * 187.97347 * 11 9 7 13 13 C 1.42965 * 114.16742 * 62.57995 * 12 11 9 14 14 C 1.53715 * 109.14754 * 297.29319 * 13 12 11 15 15 N 1.47147 * 108.16251 * 52.53312 * 14 13 12 16 16 C 1.34776 * 120.98250 * 129.43481 * 15 14 13 17 17 O 1.21274 * 120.00294 * 173.90324 * 16 15 14 18 18 C 1.50702 * 119.99783 * 353.90294 * 16 15 14 19 19 H 1.09005 * 109.60577 * 36.77041 * 18 16 15 20 20 C 1.53860 * 109.60990 * 157.10631 * 18 16 15 21 21 C 1.55132 * 106.89875 * 167.17811 * 20 18 16 22 22 S 1.83451 * 102.20594 * 317.87944 * 21 20 18 23 23 C 1.54273 * 109.61132 * 276.60333 * 18 16 15 24 24 H 0.97000 * 119.99310 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.51418 * 307.89709 * 11 9 7 26 26 H 1.09000 * 109.51594 * 68.00395 * 11 9 7 27 27 H 1.09006 * 109.50902 * 57.34100 * 13 12 11 28 28 H 1.08997 * 109.51193 * 177.44598 * 13 12 11 29 29 H 1.08994 * 109.83444 * 292.85442 * 14 13 12 30 30 H 1.09000 * 109.74413 * 172.16003 * 14 13 12 31 31 H 1.09002 * 109.96880 * 286.53562 * 20 18 16 32 32 H 1.08994 * 109.97363 * 47.81114 * 20 18 16 33 33 H 1.09000 * 110.86047 * 76.05990 * 21 20 18 34 34 H 1.09000 * 110.85274 * 199.70433 * 21 20 18 35 35 H 1.08997 * 110.39901 * 330.92520 * 23 18 16 36 36 H 1.09005 * 110.39651 * 93.21680 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.5144 -2.4978 -0.8030 11 6 0.5454 -2.6879 1.3483 12 8 -0.0097 -4.0040 1.4088 13 6 0.9606 -5.0520 1.3440 14 6 1.6860 -4.9845 -0.0095 15 7 2.1915 -3.6145 -0.1912 16 6 3.4765 -3.3882 -0.5288 17 8 3.8476 -2.2617 -0.7820 18 6 4.4522 -4.5350 -0.5916 19 1 3.9507 -5.4211 -0.9808 20 6 5.6288 -4.1622 -1.5103 21 6 6.7365 -5.2230 -1.2773 22 16 6.7065 -5.4211 0.5462 23 6 4.9953 -4.8307 0.8218 24 1 -0.4849 0.8401 -0.0004 25 1 1.2647 -2.5587 2.1571 26 1 -0.2515 -1.9510 1.4485 27 1 1.6814 -4.9313 2.1527 28 1 0.4619 -6.0163 1.4415 29 1 0.9922 -5.2294 -0.8136 30 1 2.5193 -5.6871 -0.0161 31 1 5.3082 -4.1811 -2.5519 32 1 6.0023 -3.1710 -1.2532 33 1 6.4865 -6.1606 -1.7737 34 1 7.7054 -4.8520 -1.6114 35 1 4.9990 -3.9229 1.4250 36 1 4.3977 -5.6042 1.3043 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259739240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:27 Heat of formation + Delta-G solvation = -47.032545 kcal Electronic energy + Delta-G solvation = -19979.558103 eV Core-core repulsion = 16977.278664 eV Total energy + Delta-G solvation = -3002.279439 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.92066 -37.72787 -35.43787 -34.02293 -33.00202 -30.28157 -29.66847 -27.34706 -25.15791 -24.86043 -22.80464 -22.21327 -20.36965 -18.39139 -17.68029 -16.66435 -16.20196 -15.63317 -15.18920 -14.96324 -14.41625 -14.37689 -14.22729 -13.78515 -13.59670 -13.33719 -12.75039 -12.43500 -12.22141 -12.10073 -11.91078 -11.49871 -11.30899 -10.98381 -10.90095 -10.85301 -10.59496 -10.48431 -10.11446 -10.05628 -9.45237 -9.31818 -8.56511 -7.73413 -7.72068 -7.24051 -6.04351 -4.00348 1.77413 2.27484 3.29643 3.34283 3.42180 3.51424 3.67287 4.45151 4.54621 4.60923 4.70993 4.83014 4.99583 5.10626 5.12808 5.24756 5.32157 5.42749 5.46599 5.49839 5.59327 5.66484 5.90206 5.94149 6.09084 6.18612 6.38341 6.62930 6.89701 7.33809 7.47713 7.75090 8.00995 8.11809 8.56387 8.91921 9.38509 9.71259 11.06924 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.018503 B = 0.007342 C = 0.005710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.928153 B = 3812.971191 C = 4902.650822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.054 3.946 3 Si 0.902 3.098 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.540 4.540 8 H 0.139 0.861 9 C 0.247 3.753 10 H 0.042 0.958 11 C 0.058 3.942 12 O -0.397 6.397 13 C 0.051 3.949 14 C 0.069 3.931 15 N -0.605 5.605 16 C 0.518 3.482 17 O -0.489 6.489 18 C -0.127 4.127 19 H 0.096 0.904 20 C -0.111 4.111 21 C -0.068 4.068 22 S -0.299 6.299 23 C -0.054 4.054 24 H 0.259 0.741 25 H 0.035 0.965 26 H 0.117 0.883 27 H 0.045 0.955 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.522 -12.771 -0.498 14.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.147 4.147 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.577 4.577 8 H 0.155 0.845 9 C 0.146 3.854 10 H 0.060 0.940 11 C -0.019 4.019 12 O -0.316 6.316 13 C -0.027 4.027 14 C -0.055 4.055 15 N -0.339 5.339 16 C 0.302 3.698 17 O -0.364 6.364 18 C -0.150 4.150 19 H 0.114 0.886 20 C -0.150 4.150 21 C -0.216 4.216 22 S -0.074 6.074 23 C -0.203 4.203 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.135 0.865 27 H 0.064 0.936 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.205 -12.444 0.154 14.906 hybrid contribution -0.473 1.173 -0.778 1.485 sum 7.732 -11.271 -0.624 13.683 Atomic orbital electron populations 1.69974 1.06063 1.26773 1.51810 1.25107 0.94741 0.99681 0.95125 0.86343 0.80489 0.82934 0.77152 1.19398 1.21284 1.21394 1.23208 0.97976 0.87886 1.48671 0.84535 1.19735 0.87791 0.84056 0.93782 0.94043 1.23450 0.99269 0.81184 0.97949 1.87900 1.33227 1.15989 1.94445 1.22835 0.92419 0.92205 0.95250 1.22477 0.98947 0.85193 0.98921 1.48370 1.10230 1.07034 1.68219 1.19943 0.82252 0.88957 0.78609 1.90495 1.77923 1.21461 1.46502 1.22362 0.97634 1.00120 0.94840 0.88606 1.22435 0.92329 0.99983 1.00286 1.24261 1.02752 1.02092 0.92535 1.87461 1.21556 1.87309 1.11034 1.23901 0.93151 1.04575 0.98646 0.93088 0.94701 0.86498 0.93631 0.89197 0.91224 0.90286 0.89517 0.88563 0.89223 0.87867 0.88312 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.95 12.09 55.43 0.67 -25.28 16 2 C 0.05 1.51 5.36 -17.82 -0.10 1.42 16 3 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.54 -14.89 7.45 -34.44 -0.26 -15.15 16 8 H 0.14 3.92 4.08 -58.55 -0.24 3.68 16 9 C 0.25 6.08 2.91 -68.58 -0.20 5.88 16 10 H 0.04 1.16 8.11 -51.93 -0.42 0.74 16 11 C 0.06 1.35 6.07 37.31 0.23 1.57 16 12 O -0.40 -8.09 10.74 -35.23 -0.38 -8.46 16 13 C 0.05 0.79 7.00 37.53 0.26 1.05 16 14 C 0.07 1.04 6.49 -3.32 -0.02 1.01 16 15 N -0.60 -12.03 3.01 -165.81 -0.50 -12.53 16 16 C 0.52 10.02 6.56 -10.98 -0.07 9.95 16 17 O -0.49 -11.58 11.70 5.56 0.07 -11.52 16 18 C -0.13 -1.76 2.09 -90.66 -0.19 -1.95 16 19 H 0.10 1.12 6.41 -51.93 -0.33 0.79 16 20 C -0.11 -1.43 5.50 -25.16 -0.14 -1.57 16 21 C -0.07 -0.72 7.38 38.29 0.28 -0.44 16 22 S -0.30 -3.86 23.26 -107.50 -2.50 -6.36 16 23 C -0.05 -0.72 6.68 37.82 0.25 -0.47 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.03 0.80 8.13 -51.93 -0.42 0.38 16 26 H 0.12 2.99 7.03 -51.93 -0.36 2.63 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.08 0.91 5.25 -51.93 -0.27 0.64 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.10 1.46 7.46 -51.93 -0.39 1.07 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.10 1.50 7.89 -51.93 -0.41 1.09 16 36 H 0.10 1.11 7.85 -51.93 -0.41 0.70 16 LS Contribution 294.52 15.07 4.44 4.44 Total: -1.00 -31.06 294.52 -8.10 -39.16 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -4.93 Total: 1.91 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 0.05 Total: 1.31 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.17 Total: -37.81 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.31 Total: -19.98 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: -3.86 SS G_CDS: -2.50 Total: -6.36 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.06 -8.10 -39.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259739240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.869 kcal (2) G-P(sol) polarization free energy of solvation -31.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds