Wall clock time and date at job start Mon Mar 30 2020 04:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00157 * 2 1 4 4 C 1.52995 * 109.47354 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.47230 * 64.99741 * 4 3 2 6 6 C 1.42898 * 114.00186 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47319 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47466 * 180.02562 * 7 6 5 9 9 N 1.29031 * 124.91736 * 89.99650 * 8 7 6 10 10 C 1.31780 * 117.12711 * 179.97438 * 9 8 7 11 11 C 1.50702 * 122.74877 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.46781 * 304.97702 * 11 10 9 13 13 H 1.07999 * 120.00287 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99626 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00112 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99896 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47061 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.46975 * 119.99498 * 16 14 12 19 19 H 1.48496 * 109.46961 * 239.99541 * 16 14 12 20 20 C 1.33637 * 114.50002 * 0.02562 * 10 9 8 21 21 S 1.70980 * 124.91855 * 269.69899 * 8 7 6 22 22 H 1.08998 * 109.46934 * 300.00056 * 1 2 3 23 23 H 1.08997 * 109.47320 * 60.00223 * 1 2 3 24 24 H 1.09007 * 109.46742 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47152 * 59.99569 * 3 2 1 26 26 H 1.09004 * 109.46598 * 299.99872 * 3 2 1 27 27 H 1.09001 * 109.47081 * 304.99950 * 4 3 2 28 28 H 1.08999 * 109.47384 * 184.99643 * 4 3 2 29 29 H 1.09002 * 109.47259 * 300.00293 * 6 5 4 30 30 H 1.09001 * 109.47074 * 60.00315 * 6 5 4 31 31 H 1.09002 * 109.47153 * 300.00307 * 7 6 5 32 32 H 1.08998 * 109.47533 * 59.99936 * 7 6 5 33 33 H 1.08995 * 109.47095 * 64.97471 * 11 10 9 34 34 H 1.08999 * 109.46804 * 184.98014 * 11 10 9 35 35 H 0.96997 * 120.00307 * 180.02562 * 15 14 12 36 36 H 1.07997 * 126.03814 * 180.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3822 0.4197 -1.3220 7 6 5.7268 -0.2340 -2.6617 8 6 7.2204 -0.4028 -2.7689 9 7 7.8765 -1.4415 -2.3745 10 6 9.1834 -1.4266 -2.5434 11 6 10.0719 -2.5713 -2.1298 12 6 9.8470 -2.8805 -0.6721 13 1 9.1325 -2.3053 -0.1021 14 6 10.5543 -3.8971 -0.0659 15 7 11.4248 -4.5972 -0.7599 16 14 10.2761 -4.2799 1.7412 17 1 9.2531 -3.3546 2.2914 18 1 9.8047 -5.6808 1.8835 19 1 11.5496 -4.1081 2.4853 20 6 9.6561 -0.3131 -3.1114 21 16 8.2903 0.7513 -3.4375 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 1.6886 1.8464 0.8899 26 1 1.6886 1.8463 -0.8901 27 1 3.8507 0.5685 0.8427 28 1 3.9784 2.1765 0.0901 29 1 5.8632 1.3959 -1.2601 30 1 5.7362 -0.2121 -0.5074 31 1 5.2458 -1.2102 -2.7241 32 1 5.3728 0.3980 -3.4761 33 1 9.8341 -3.4505 -2.7285 34 1 11.1150 -2.2964 -2.2862 35 1 11.9221 -5.3125 -0.3336 36 1 10.6917 -0.1046 -3.3356 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304395744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:06 Heat of formation + Delta-G solvation = -59.792002 kcal Electronic energy + Delta-G solvation = -17738.225868 eV Core-core repulsion = 14735.393137 eV Total energy + Delta-G solvation = -3002.832731 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.26847 -38.57309 -37.36115 -33.69933 -32.60970 -30.57855 -29.24878 -27.39477 -26.48407 -24.50039 -23.29694 -22.73390 -21.10833 -19.12749 -17.29191 -16.98134 -16.85531 -16.07331 -15.63443 -15.59673 -15.51587 -14.71887 -14.25604 -14.21913 -13.56349 -13.35623 -12.84117 -12.63966 -12.27276 -12.12983 -11.80708 -11.57330 -11.46324 -11.28337 -11.11739 -11.09357 -10.71312 -10.49412 -9.93101 -9.68291 -9.65515 -9.38603 -8.94631 -8.82433 -8.42864 -7.93891 -6.01636 -4.02435 1.28545 1.90627 2.29693 3.33044 3.38083 3.40920 3.46549 3.54146 3.71907 4.48833 4.64441 4.77287 4.93379 5.02306 5.08807 5.10802 5.13159 5.25413 5.32947 5.36300 5.40700 5.44709 5.51728 5.76024 5.88077 6.04482 6.06735 6.27740 6.89397 6.99378 7.11711 7.45030 7.53892 7.94994 8.29165 8.58677 9.00800 9.60063 11.09534 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.014533 B = 0.004235 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.251920 B = 6609.854790 C = 8174.463262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.064 3.936 4 C 0.063 3.937 5 O -0.380 6.380 6 C 0.070 3.930 7 C -0.033 4.033 8 C 0.041 3.959 9 N -0.440 5.440 10 C 0.115 3.885 11 C 0.082 3.918 12 C -0.501 4.501 13 H 0.059 0.941 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.897 3.103 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.284 1.284 20 C -0.271 4.271 21 S 0.048 5.952 22 H 0.038 0.962 23 H 0.041 0.959 24 H 0.086 0.914 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.040 0.960 34 H 0.037 0.963 35 H 0.261 0.739 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.319 14.409 -1.575 21.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C -0.013 4.013 4 C -0.014 4.014 5 O -0.300 6.300 6 C -0.008 4.008 7 C -0.075 4.075 8 C -0.238 4.238 9 N -0.154 5.154 10 C -0.015 4.015 11 C 0.043 3.957 12 C -0.540 4.540 13 H 0.077 0.923 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.725 3.275 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.408 4.408 21 S 0.300 5.700 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.104 0.896 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -16.600 14.589 -1.925 22.184 hybrid contribution 0.549 -0.586 1.456 1.663 sum -16.051 14.002 -0.469 21.306 Atomic orbital electron populations 1.22744 0.81223 1.02894 0.99700 1.88005 1.19449 1.27243 1.95324 1.22566 0.92499 0.85521 1.00705 1.22503 0.93127 0.97629 0.88106 1.87873 1.22065 1.82184 1.37831 1.22435 0.81078 0.99497 0.97817 1.19914 0.86691 1.03610 0.97240 1.26682 1.00357 0.93518 1.03230 1.66154 1.08239 1.24001 1.17010 1.21282 0.88944 0.97308 0.93975 1.18042 0.91772 0.88736 0.97182 1.21027 1.22340 1.16610 0.93980 0.92261 1.24984 0.95172 0.95981 0.98338 1.69951 1.25818 1.21763 1.36204 0.86450 0.77905 0.78260 0.84921 1.19752 1.20896 1.21045 1.26785 1.02549 0.98132 1.13369 1.83481 1.01013 1.24817 1.60662 0.94300 0.94082 0.89554 0.91921 0.92425 0.92176 0.91753 0.93143 0.92068 0.88082 0.89388 0.94169 0.94481 0.92921 0.81168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.53 10.67 -40.08 -0.43 -4.96 16 3 C 0.06 0.60 6.32 37.16 0.23 0.83 16 4 C 0.06 0.67 6.32 37.16 0.23 0.91 16 5 O -0.38 -5.15 10.31 -40.08 -0.41 -5.57 16 6 C 0.07 0.96 5.92 37.16 0.22 1.18 16 7 C -0.03 -0.48 6.17 -27.89 -0.17 -0.65 16 8 C 0.04 0.74 6.64 -13.46 -0.09 0.65 16 9 N -0.44 -9.76 10.39 -8.06 -0.08 -9.85 16 10 C 0.11 2.63 6.02 -84.23 -0.51 2.12 16 11 C 0.08 2.18 5.47 -29.03 -0.16 2.02 16 12 C -0.50 -14.51 8.99 -34.44 -0.31 -14.82 16 13 H 0.06 1.74 7.73 -52.49 -0.41 1.34 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 16 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 17 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 C -0.27 -5.18 11.07 29.12 0.32 -4.86 16 21 S 0.05 0.75 23.18 -107.50 -2.49 -1.74 16 22 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 23 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.09 0.62 8.14 -51.92 -0.42 0.19 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.04 0.99 8.03 -51.93 -0.42 0.57 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.17 2.89 8.06 -52.49 -0.42 2.47 16 LS Contribution 327.90 15.07 4.94 4.94 Total: -1.00 -32.90 327.90 -7.42 -40.32 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -5.45 Total: -4.42 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 0.79 Total: -9.74 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.65 Total: -35.99 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -0.84 Total: -10.53 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.49 Total: -1.74 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.90 -7.42 -40.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304395744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.473 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds