Wall clock time and date at job start Mon Mar 30 2020 04:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00157 * 2 1 4 4 C 1.52995 * 109.47354 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.47230 * 64.99741 * 4 3 2 6 6 C 1.42898 * 114.00186 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47319 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47466 * 180.02562 * 7 6 5 9 9 N 1.29031 * 124.91736 * 89.99650 * 8 7 6 10 10 C 1.31780 * 117.12711 * 179.97438 * 9 8 7 11 11 C 1.50702 * 122.74877 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.46781 * 304.97702 * 11 10 9 13 13 H 1.07999 * 120.00287 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99626 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00112 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99896 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47061 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.46975 * 119.99498 * 16 14 12 19 19 H 1.48496 * 109.46961 * 239.99541 * 16 14 12 20 20 C 1.33637 * 114.50002 * 0.02562 * 10 9 8 21 21 S 1.70980 * 124.91855 * 269.69899 * 8 7 6 22 22 H 1.08998 * 109.46934 * 300.00056 * 1 2 3 23 23 H 1.08997 * 109.47320 * 60.00223 * 1 2 3 24 24 H 1.09007 * 109.46742 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47152 * 59.99569 * 3 2 1 26 26 H 1.09004 * 109.46598 * 299.99872 * 3 2 1 27 27 H 1.09001 * 109.47081 * 304.99950 * 4 3 2 28 28 H 1.08999 * 109.47384 * 184.99643 * 4 3 2 29 29 H 1.09002 * 109.47259 * 300.00293 * 6 5 4 30 30 H 1.09001 * 109.47074 * 60.00315 * 6 5 4 31 31 H 1.09002 * 109.47153 * 300.00307 * 7 6 5 32 32 H 1.08998 * 109.47533 * 59.99936 * 7 6 5 33 33 H 1.08995 * 109.47095 * 64.97471 * 11 10 9 34 34 H 1.08999 * 109.46804 * 184.98014 * 11 10 9 35 35 H 0.96997 * 120.00307 * 180.02562 * 15 14 12 36 36 H 1.07997 * 126.03814 * 180.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3822 0.4197 -1.3220 7 6 5.7268 -0.2340 -2.6617 8 6 7.2204 -0.4028 -2.7689 9 7 7.8765 -1.4415 -2.3745 10 6 9.1834 -1.4266 -2.5434 11 6 10.0719 -2.5713 -2.1298 12 6 9.8470 -2.8805 -0.6721 13 1 9.1325 -2.3053 -0.1021 14 6 10.5543 -3.8971 -0.0659 15 7 11.4248 -4.5972 -0.7599 16 14 10.2761 -4.2799 1.7412 17 1 9.2531 -3.3546 2.2914 18 1 9.8047 -5.6808 1.8835 19 1 11.5496 -4.1081 2.4853 20 6 9.6561 -0.3131 -3.1114 21 16 8.2903 0.7513 -3.4375 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 1.6886 1.8464 0.8899 26 1 1.6886 1.8463 -0.8901 27 1 3.8507 0.5685 0.8427 28 1 3.9784 2.1765 0.0901 29 1 5.8632 1.3959 -1.2601 30 1 5.7362 -0.2121 -0.5074 31 1 5.2458 -1.2102 -2.7241 32 1 5.3728 0.3980 -3.4761 33 1 9.8341 -3.4505 -2.7285 34 1 11.1150 -2.2964 -2.2862 35 1 11.9221 -5.3125 -0.3336 36 1 10.6917 -0.1046 -3.3356 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304395744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:06 Heat of formation + Delta-G solvation = -82.421980 kcal Electronic energy + Delta-G solvation = -17739.207177 eV Core-core repulsion = 14735.393137 eV Total energy + Delta-G solvation = -3003.814040 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.79511 -39.45474 -38.23843 -35.50160 -34.23841 -31.83829 -30.57127 -29.14091 -27.14924 -25.97922 -25.09841 -23.51524 -22.53451 -20.63514 -18.83058 -18.25448 -17.79783 -17.73511 -16.66091 -16.57556 -16.46828 -16.37262 -15.72164 -15.53471 -14.73150 -14.60477 -14.33273 -13.95015 -13.80530 -13.53843 -13.13660 -13.07433 -12.76522 -12.60183 -12.42695 -12.36515 -12.17456 -11.95369 -11.68417 -11.46630 -10.66617 -10.64748 -10.59809 -10.41300 -10.25847 -9.48190 -8.22711 -6.32185 -0.16174 0.52745 0.81392 1.36532 1.37995 1.51103 1.95631 2.40647 2.55911 2.89075 3.09503 3.37190 3.96607 4.02142 4.12297 4.21051 4.25442 4.42666 4.43298 4.45675 4.53893 4.57771 4.62404 4.65969 4.74738 4.86491 4.87741 4.93678 5.16386 5.35611 5.45906 5.70890 6.11614 6.14456 6.29711 6.76118 7.05723 7.34692 8.88529 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.014533 B = 0.004235 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.251920 B = 6609.854790 C = 8174.463262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.062 3.938 4 C 0.053 3.947 5 O -0.395 6.395 6 C 0.076 3.924 7 C -0.032 4.032 8 C 0.032 3.968 9 N -0.492 5.492 10 C 0.078 3.922 11 C 0.089 3.911 12 C -0.519 4.519 13 H 0.048 0.952 14 C 0.005 3.995 15 N -0.930 5.930 16 Si 0.965 3.035 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.271 1.271 20 C -0.277 4.277 21 S 0.162 5.838 22 H 0.056 0.944 23 H 0.050 0.950 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.035 0.965 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.006 0.994 34 H 0.025 0.975 35 H 0.266 0.734 36 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.595 16.946 -1.287 24.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.015 4.015 4 C -0.023 4.023 5 O -0.314 6.314 6 C -0.002 4.002 7 C -0.073 4.073 8 C -0.246 4.246 9 N -0.207 5.207 10 C -0.052 4.052 11 C 0.050 3.950 12 C -0.557 4.557 13 H 0.066 0.934 14 C -0.193 4.193 15 N -0.570 5.570 16 Si 0.790 3.210 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.196 1.196 20 C -0.415 4.415 21 S 0.416 5.584 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.106 0.894 25 H 0.108 0.892 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.106 0.894 32 H 0.138 0.862 33 H 0.024 0.976 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -17.893 17.150 -1.647 24.839 hybrid contribution 0.872 -1.254 1.288 1.998 sum -17.021 15.896 -0.358 23.292 Atomic orbital electron populations 1.22902 0.79558 1.03539 1.01010 1.87949 1.21492 1.28929 1.95631 1.22721 0.91389 0.84955 1.02394 1.22794 0.94398 0.98532 0.86551 1.87849 1.21563 1.82772 1.39262 1.22292 0.81692 0.99826 0.96361 1.20033 0.84564 1.03821 0.98890 1.27185 1.01966 0.93404 1.02055 1.66053 1.08267 1.26853 1.19539 1.20730 0.89418 0.97747 0.97350 1.17691 0.92094 0.89443 0.95769 1.21265 1.22189 1.16909 0.95340 0.93384 1.25863 0.94763 0.95666 1.03045 1.70057 1.26550 1.22244 1.38161 0.85399 0.78244 0.78091 0.79313 1.19571 1.20193 1.19602 1.27071 1.05067 0.98130 1.11233 1.83002 0.96754 1.20934 1.57759 0.92585 0.93101 0.89393 0.89235 0.91564 0.93385 0.89011 0.91088 0.94697 0.89375 0.86198 0.97625 0.95710 0.92494 0.79508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.62 16 2 O -0.42 -9.56 10.67 -144.34 -1.54 -11.10 16 3 C 0.06 1.03 6.32 71.98 0.45 1.48 16 4 C 0.05 1.05 6.32 71.98 0.45 1.50 16 5 O -0.39 -10.14 10.31 -144.34 -1.49 -11.63 16 6 C 0.08 2.00 5.92 71.98 0.43 2.43 16 7 C -0.03 -0.88 6.17 29.85 0.18 -0.70 16 8 C 0.03 1.10 6.64 88.52 0.59 1.69 16 9 N -0.49 -22.24 10.39 -179.40 -1.86 -24.10 16 10 C 0.08 3.65 6.02 41.52 0.25 3.90 16 11 C 0.09 5.01 5.47 29.10 0.16 5.17 16 12 C -0.52 -31.20 8.99 25.60 0.23 -30.97 16 13 H 0.05 2.93 7.73 -2.91 -0.02 2.90 16 14 C 0.00 0.27 5.46 84.66 0.46 0.73 16 15 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 16 Si 0.96 46.22 29.54 68.60 2.03 48.24 16 17 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 20 C -0.28 -10.31 11.07 66.78 0.74 -9.57 16 21 S 0.16 4.57 23.18 -56.49 -1.31 3.26 16 22 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 23 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.03 1.08 8.14 -2.39 -0.02 1.07 16 31 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.02 1.39 8.03 -2.39 -0.02 1.38 16 35 H 0.27 15.25 8.31 -92.71 -0.77 14.47 16 36 H 0.19 6.10 8.06 -2.91 -0.02 6.08 16 Total: -1.00 -73.74 327.90 2.36 -71.38 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: 1.05 Total: 3.52 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: 5.20 Total: -22.72 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -1.58 Total: -80.96 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -3.03 Total: -22.74 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Atomic # 16 Polarization: 4.57 SS G_CDS: -1.31 Total: 3.26 kcal Total: -73.74 2.36 -71.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304395744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.038 kcal (2) G-P(sol) polarization free energy of solvation -73.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds