Wall clock time and date at job start Mon Mar 30 2020 05:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46909 * 249.30771 * 3 2 1 5 5 C 1.36758 * 120.00035 * 262.36264 * 4 3 2 6 6 H 1.08003 * 120.00469 * 212.59529 * 5 4 3 7 7 C 1.39088 * 120.00217 * 32.59806 * 5 4 3 8 8 N 1.31356 * 119.99612 * 6.00643 * 7 5 4 9 9 Si 1.86799 * 120.00468 * 186.01341 * 7 5 4 10 10 H 1.48500 * 109.47293 * 89.99401 * 9 7 5 11 11 H 1.48492 * 109.47112 * 209.99787 * 9 7 5 12 12 H 1.48501 * 109.46746 * 329.99657 * 9 7 5 13 13 C 1.34771 * 120.00253 * 82.36259 * 4 3 2 14 14 O 1.21789 * 120.00382 * 179.97438 * 13 4 3 15 15 C 1.41739 * 120.00064 * 359.97438 * 13 4 3 16 16 C 1.35197 * 120.00441 * 186.82663 * 15 13 4 17 17 C 1.46873 * 119.99776 * 15.20837 * 16 15 13 18 18 C 1.40061 * 120.09734 * 38.97109 * 17 16 15 19 19 C 1.37087 * 119.90295 * 180.27132 * 18 17 16 20 20 C 1.39254 * 120.09426 * 359.46090 * 19 18 17 21 21 N 1.39123 * 119.90124 * 180.27257 * 20 19 18 22 22 C 1.39254 * 120.19354 * 0.29097 * 20 19 18 23 23 C 1.37085 * 120.09947 * 359.97438 * 22 20 19 24 24 H 1.08993 * 109.46843 * 129.31222 * 3 2 1 25 25 H 1.09002 * 109.47455 * 9.30869 * 3 2 1 26 26 H 0.96998 * 120.00048 * 180.02562 * 8 7 5 27 27 H 1.08000 * 119.99865 * 6.83242 * 15 13 4 28 28 H 1.08002 * 120.00361 * 195.20696 * 16 15 13 29 29 H 1.08005 * 120.05002 * 0.02562 * 18 17 16 30 30 H 1.08001 * 119.95532 * 179.72679 * 19 18 17 31 31 H 0.97003 * 120.00279 * 359.97438 * 21 20 19 32 32 H 0.97004 * 119.99884 * 179.97438 * 21 20 19 33 33 H 1.08003 * 119.94429 * 180.02562 * 22 20 19 34 34 H 1.08000 * 120.04874 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0961 0.4889 1.2921 5 6 3.4718 1.7965 1.4314 6 1 4.2692 2.0599 2.1105 7 6 2.8271 2.7872 0.6984 8 7 1.7816 2.4847 -0.0371 9 14 3.4478 4.5480 0.7598 10 1 4.4533 4.7561 -0.3130 11 1 2.3101 5.4812 0.5598 12 1 4.0735 4.8064 2.0815 13 6 3.1749 -0.3504 2.3436 14 8 3.5810 0.0554 3.4177 15 6 2.7849 -1.7055 2.1995 16 6 2.7320 -2.5126 3.2828 17 6 2.7468 -1.9326 4.6321 18 6 2.0409 -0.7523 4.8970 19 6 2.0620 -0.2114 6.1565 20 6 2.7748 -0.8398 7.1745 21 7 2.7888 -0.2904 8.4525 22 6 3.4738 -2.0163 6.9168 23 6 3.4625 -2.5612 5.6589 24 1 2.9710 0.6519 -0.7951 25 1 2.9719 -1.0133 -0.1662 26 1 1.3321 3.1755 -0.5485 27 1 2.5302 -2.0933 1.2243 28 1 2.6788 -3.5838 3.1561 29 1 1.4840 -0.2667 4.1092 30 1 1.5216 0.7012 6.3606 31 1 2.3029 0.5294 8.6335 32 1 3.2845 -0.7272 9.1628 33 1 4.0249 -2.5006 7.7094 34 1 4.0053 -3.4735 5.4599 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310559981.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:45 Heat of formation + Delta-G solvation = 44.224913 kcal Electronic energy + Delta-G solvation = -20095.675409 eV Core-core repulsion = 16994.201990 eV Total energy + Delta-G solvation = -3101.473419 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.03164 -39.80267 -37.60407 -36.30085 -35.54426 -33.87555 -33.13367 -31.73232 -29.27845 -28.84865 -26.78132 -24.27568 -23.42927 -22.18564 -19.82986 -19.48797 -18.51180 -18.02894 -17.82777 -17.52852 -16.68295 -16.10576 -15.60794 -15.29138 -14.94817 -14.70616 -14.62984 -14.34454 -14.12085 -13.81151 -13.68945 -13.62897 -13.23279 -13.01655 -12.88310 -12.46956 -12.27604 -12.16780 -12.13208 -11.82886 -11.48750 -11.01920 -10.27517 -10.03169 -9.77516 -9.42569 -8.36215 -7.98078 -6.01490 0.02348 0.79282 1.26685 1.43169 1.45598 1.54668 2.03469 2.29152 2.39988 2.69671 3.09059 3.14921 3.23032 3.37233 3.70221 4.07999 4.12874 4.22116 4.34391 4.55570 4.62262 4.80198 4.84722 4.92857 5.07476 5.26327 5.34741 5.40345 5.46516 5.58841 5.76625 6.01281 6.13033 6.22510 6.54542 6.68132 7.06797 7.11038 7.21196 7.42183 8.08878 8.67278 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.006108 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.777887 B = 4582.824655 C = 5440.703107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C 0.263 3.737 3 C 0.223 3.777 4 N -0.456 5.456 5 C -0.323 4.323 6 H 0.077 0.923 7 C 0.001 3.999 8 N -0.899 5.899 9 Si 0.986 3.014 10 H -0.259 1.259 11 H -0.288 1.288 12 H -0.279 1.279 13 C 0.483 3.517 14 O -0.594 6.594 15 C -0.242 4.242 16 C -0.012 4.012 17 C -0.148 4.148 18 C 0.006 3.994 19 C -0.237 4.237 20 C 0.224 3.776 21 N -0.864 5.864 22 C -0.223 4.223 23 C -0.050 4.050 24 H 0.117 0.883 25 H 0.136 0.864 26 H 0.271 0.729 27 H 0.148 0.852 28 H 0.169 0.831 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.402 0.598 32 H 0.409 0.591 33 H 0.145 0.855 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.585 -9.986 8.009 13.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.196 5.196 2 C -0.054 4.054 3 C 0.097 3.903 4 N -0.176 5.176 5 C -0.451 4.451 6 H 0.095 0.905 7 C -0.200 4.200 8 N -0.538 5.538 9 Si 0.811 3.189 10 H -0.184 1.184 11 H -0.213 1.213 12 H -0.204 1.204 13 C 0.277 3.723 14 O -0.480 6.480 15 C -0.263 4.263 16 C -0.032 4.032 17 C -0.150 4.150 18 C -0.014 4.014 19 C -0.260 4.260 20 C 0.117 3.883 21 N -0.404 5.404 22 C -0.246 4.246 23 C -0.069 4.069 24 H 0.135 0.865 25 H 0.154 0.846 26 H 0.081 0.919 27 H 0.165 0.835 28 H 0.186 0.814 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.231 0.769 32 H 0.239 0.761 33 H 0.163 0.837 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.006 -9.641 8.355 13.107 hybrid contribution 0.247 1.908 -0.069 1.926 sum 3.253 -7.733 8.286 11.792 Atomic orbital electron populations 1.80862 1.14860 1.14139 1.09743 1.29709 0.95799 0.88514 0.91375 1.18991 0.80147 1.02240 0.88951 1.43677 1.56534 1.09236 1.08147 1.19475 1.17048 0.82568 1.26002 0.90529 1.26047 0.94572 1.03119 0.96254 1.69697 1.19091 1.35335 1.29681 0.85020 0.77684 0.77499 0.78712 1.18373 1.21339 1.20394 1.17780 0.82965 0.88046 0.83494 1.90725 1.51570 1.79349 1.26358 1.22286 1.08596 0.93981 1.01398 1.22640 0.90415 1.00042 0.90105 1.18855 1.04048 0.97513 0.94569 1.20594 0.94469 0.92263 0.94062 1.20330 1.08706 1.03047 0.93946 1.17917 0.92302 0.92223 0.85819 1.42284 1.59429 1.30809 1.07850 1.20543 1.07325 0.97966 0.98772 1.21118 0.95483 0.98989 0.91304 0.86529 0.84645 0.91910 0.83457 0.81359 0.90915 0.87551 0.76920 0.76115 0.83699 0.83253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -25.00 18.54 20.01 0.37 -24.63 16 2 C 0.26 11.72 12.86 89.44 1.15 12.87 16 3 C 0.22 8.74 4.79 84.57 0.41 9.15 16 4 N -0.46 -21.64 2.57 -655.40 -1.68 -23.32 16 5 C -0.32 -17.05 9.05 84.13 0.76 -16.28 16 6 H 0.08 4.33 7.58 -2.91 -0.02 4.31 16 7 C 0.00 0.08 5.14 84.97 0.44 0.51 16 8 N -0.90 -46.61 9.35 21.69 0.20 -46.40 16 9 Si 0.99 41.87 29.56 68.60 2.03 43.89 16 10 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 11 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 13 C 0.48 22.31 6.22 85.11 0.53 22.84 16 14 O -0.59 -31.29 11.96 -4.63 -0.06 -31.35 16 15 C -0.24 -8.59 8.72 22.43 0.20 -8.40 16 16 C -0.01 -0.36 9.81 23.83 0.23 -0.12 16 17 C -0.15 -5.24 4.58 -20.13 -0.09 -5.33 16 18 C 0.01 0.23 6.65 22.44 0.15 0.38 16 19 C -0.24 -8.86 9.85 22.24 0.22 -8.64 16 20 C 0.22 6.71 6.76 38.47 0.26 6.97 16 21 N -0.86 -18.24 9.06 -51.29 -0.46 -18.71 16 22 C -0.22 -6.07 9.85 22.24 0.22 -5.85 16 23 C -0.05 -1.45 9.76 22.44 0.22 -1.23 16 24 H 0.12 4.67 6.98 -2.39 -0.02 4.65 16 25 H 0.14 3.82 6.45 -2.39 -0.02 3.80 16 26 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 27 H 0.15 4.22 6.11 -2.91 -0.02 4.20 16 28 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 29 H 0.07 3.53 6.79 -2.91 -0.02 3.51 16 30 H 0.11 3.86 8.06 -2.91 -0.02 3.84 16 31 H 0.40 7.55 8.83 -92.71 -0.82 6.73 16 32 H 0.41 6.16 8.83 -92.71 -0.82 5.34 16 33 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 34 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -71.96 298.49 4.61 -67.35 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: -0.47 Total: 26.30 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 4.69 Total: 6.87 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -1.57 Total: -113.07 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.06 Total: -31.35 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -71.96 4.61 -67.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310559981.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.573 kcal (2) G-P(sol) polarization free energy of solvation -71.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds