Wall clock time and date at job start Mon Mar 30 2020 05:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86805 * 119.99509 * 2 1 4 4 H 1.48501 * 109.46913 * 274.98435 * 3 2 1 5 5 H 1.48501 * 109.47406 * 34.99077 * 3 2 1 6 6 H 1.48501 * 109.46518 * 154.99160 * 3 2 1 7 7 C 1.39899 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99793 * 147.60169 * 7 2 1 9 9 C 1.41154 * 120.00358 * 327.59706 * 7 2 1 10 10 C 1.40864 * 120.16702 * 157.94563 * 9 7 2 11 11 C 1.36369 * 119.83172 * 180.02562 * 10 9 7 12 12 C 1.39485 * 120.16723 * 0.02562 * 11 10 9 13 13 N 1.39233 * 119.83485 * 179.97438 * 12 11 10 14 14 C 1.34778 * 119.99865 * 37.76199 * 13 12 11 15 15 O 1.21275 * 120.00062 * 356.70167 * 14 13 12 16 16 C 1.50703 * 119.99576 * 176.70131 * 14 13 12 17 17 N 1.46507 * 109.46646 * 180.02562 * 16 14 13 18 18 C 1.36873 * 126.39631 * 270.02726 * 17 16 14 19 19 C 1.34673 * 106.81837 * 179.97438 * 18 17 16 20 20 N 1.34123 * 108.01632 * 0.02562 * 19 18 17 21 21 C 1.30495 * 109.25874 * 359.97438 * 20 19 18 22 22 C 1.39478 * 120.33194 * 0.25247 * 12 11 10 23 23 C 1.36383 * 120.16809 * 359.44432 * 22 12 11 24 24 H 0.97002 * 120.00073 * 359.97438 * 1 2 3 25 25 H 1.08006 * 120.08513 * 0.02562 * 10 9 7 26 26 H 1.07995 * 119.92269 * 180.02562 * 11 10 9 27 27 H 0.97007 * 120.00114 * 217.76266 * 13 12 11 28 28 H 1.08995 * 109.47647 * 60.00348 * 16 14 13 29 29 H 1.08996 * 109.47043 * 299.99492 * 16 14 13 30 30 H 1.08003 * 126.59352 * 359.97438 * 18 17 16 31 31 H 1.08001 * 125.98806 * 180.26462 * 19 18 17 32 32 H 1.07997 * 125.64590 * 179.97438 * 21 20 19 33 33 H 1.08004 * 119.91966 * 179.72642 * 22 12 11 34 34 H 1.08002 * 120.08146 * 180.25205 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6179 0.0000 4 1 2.3847 2.1073 -1.3948 5 1 1.4967 2.6200 0.8029 6 1 3.5889 1.4121 0.5919 7 6 2.0082 -1.2116 -0.0005 8 1 2.9622 -1.2841 -0.5017 9 6 1.4673 -2.3392 0.6540 10 6 1.8853 -3.6351 0.2934 11 6 1.3579 -4.7197 0.9298 12 6 0.4065 -4.5483 1.9353 13 7 -0.1279 -5.6606 2.5802 14 6 0.6574 -6.7200 2.8586 15 8 1.8142 -6.7296 2.4945 16 6 0.0980 -7.8925 3.6223 17 7 1.1422 -8.9054 3.7956 18 6 1.4196 -9.9400 2.9434 19 6 2.4478 -10.6231 3.4816 20 7 2.7886 -10.0223 4.6313 21 6 2.0109 -8.9926 4.8257 22 6 -0.0166 -3.2685 2.2939 23 6 0.5063 -2.1740 1.6706 24 1 -0.4850 0.8401 0.0004 25 1 2.6217 -3.7694 -0.4853 26 1 1.6776 -5.7139 0.6548 27 1 -1.0654 -5.6730 2.8292 28 1 -0.7369 -8.3220 3.0685 29 1 -0.2484 -7.5575 4.5999 30 1 0.9114 -10.1652 2.0174 31 1 2.9183 -11.4988 3.0593 32 1 2.0545 -8.3217 5.6709 33 1 -0.7570 -3.1437 3.0703 34 1 0.1807 -1.1835 1.9522 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310836393.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:11 Heat of formation + Delta-G solvation = 55.335453 kcal Electronic energy + Delta-G solvation = -19296.553296 eV Core-core repulsion = 16195.561666 eV Total energy + Delta-G solvation = -3100.991630 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.02505 -39.67748 -37.37152 -34.64988 -33.92011 -33.13877 -29.76693 -29.55214 -29.26995 -27.71027 -24.86190 -22.08698 -21.31969 -21.26213 -20.69821 -19.90603 -17.75538 -17.52913 -17.11581 -16.22600 -15.32720 -15.28139 -14.80065 -14.19720 -14.08175 -13.87094 -13.54027 -13.35097 -13.12723 -12.74360 -12.46149 -12.18774 -12.07581 -11.51707 -11.21827 -11.03524 -10.62362 -10.35353 -10.00952 -9.97133 -9.85226 -9.44996 -9.12635 -8.81300 -8.45593 -7.65260 -7.26412 -6.98432 -4.36759 2.01635 2.40170 2.66425 2.83239 2.99234 3.00927 3.05487 3.21540 3.24780 3.59888 3.82784 4.39375 4.53973 4.75339 4.76029 4.79173 4.93075 5.45219 5.57892 5.70604 6.07836 6.23943 6.30981 6.63057 6.74733 6.82032 6.90839 7.02471 7.13902 7.18051 7.45669 7.55673 7.76285 7.92444 8.10103 8.11555 8.16176 8.44260 8.56379 8.74793 8.88295 9.92928 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.046540 B = 0.003437 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.483231 B = 8143.571260 C = 8369.197959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.897 3.103 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.463 4.463 8 H 0.083 0.917 9 C 0.115 3.885 10 C -0.225 4.225 11 C -0.063 4.063 12 C -0.030 4.030 13 N -0.641 5.641 14 C 0.476 3.524 15 O -0.514 6.514 16 C 0.087 3.913 17 N -0.442 5.442 18 C -0.046 4.046 19 C -0.033 4.033 20 N -0.497 5.497 21 C 0.193 3.807 22 C -0.098 4.098 23 C -0.172 4.172 24 H 0.284 0.716 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.395 0.605 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.171 0.829 31 H 0.168 0.832 32 H 0.201 0.799 33 H 0.090 0.910 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.298 -10.040 6.069 12.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.490 4.490 8 H 0.101 0.899 9 C 0.112 3.888 10 C -0.245 4.245 11 C -0.082 4.082 12 C -0.122 4.122 13 N -0.285 5.285 14 C 0.260 3.740 15 O -0.389 6.389 16 C -0.040 4.040 17 N -0.125 5.125 18 C -0.178 4.178 19 C -0.180 4.180 20 N -0.215 5.215 21 C -0.089 4.089 22 C -0.118 4.118 23 C -0.192 4.192 24 H 0.095 0.905 25 H 0.113 0.887 26 H 0.118 0.882 27 H 0.229 0.771 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.188 0.812 31 H 0.185 0.815 32 H 0.218 0.782 33 H 0.108 0.892 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.154 -10.079 6.302 12.592 hybrid contribution -0.934 1.195 -0.526 1.605 sum -5.088 -8.884 5.777 11.755 Atomic orbital electron populations 1.69939 1.08120 1.30024 1.30872 1.25962 0.94387 1.01628 0.91444 0.86484 0.81545 0.80637 0.79303 1.19368 1.19811 1.18011 1.19551 1.05401 0.93752 1.30331 0.89890 1.17602 0.89590 0.91834 0.89797 1.20601 1.07107 0.92320 1.04459 1.20274 0.96254 0.97945 0.93774 1.16994 1.07978 0.84631 1.02605 1.42830 1.11899 1.15900 1.57897 1.20620 0.87109 0.84474 0.81813 1.90784 1.17063 1.79339 1.51713 1.21696 0.90228 0.88406 1.03687 1.44986 1.27146 1.21467 1.18882 1.22658 1.03886 0.92628 0.98677 1.22215 0.98447 1.02825 0.94525 1.70262 1.24881 1.08171 1.18231 1.24918 0.90252 0.99264 0.94491 1.20150 1.00569 0.91500 0.99622 1.20628 1.02573 0.96679 0.99306 0.90482 0.88692 0.88155 0.77113 0.86428 0.86118 0.81178 0.81516 0.78192 0.89203 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.84 11.78 55.55 0.65 -18.18 16 2 C 0.09 2.12 4.77 -17.34 -0.08 2.04 16 3 Si 0.90 17.80 29.66 -169.99 -5.04 12.76 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 7 C -0.46 -12.02 8.94 -37.85 -0.34 -12.35 16 8 H 0.08 2.09 8.02 -52.48 -0.42 1.67 16 9 C 0.11 3.00 5.57 -106.80 -0.60 2.41 16 10 C -0.22 -5.65 9.74 -39.26 -0.38 -6.03 16 11 C -0.06 -1.48 8.59 -39.79 -0.34 -1.82 16 12 C -0.03 -0.64 6.25 -83.57 -0.52 -1.16 16 13 N -0.64 -10.02 5.30 -9.74 -0.05 -10.07 16 14 C 0.48 7.31 7.71 -10.98 -0.08 7.22 16 15 O -0.51 -10.65 14.05 5.56 0.08 -10.57 16 16 C 0.09 0.84 6.63 -5.19 -0.03 0.80 16 17 N -0.44 -5.46 2.24 -119.87 -0.27 -5.73 16 18 C -0.05 -0.57 11.58 -16.56 -0.19 -0.76 16 19 C -0.03 -0.44 11.87 -17.81 -0.21 -0.65 16 20 N -0.50 -7.63 11.25 -14.67 -0.17 -7.80 16 21 C 0.19 2.58 12.56 -90.38 -1.14 1.45 16 22 C -0.10 -2.14 9.90 -39.79 -0.39 -2.54 16 23 C -0.17 -4.26 8.74 -39.26 -0.34 -4.61 16 24 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 25 H 0.09 2.29 8.06 -52.48 -0.42 1.87 16 26 H 0.10 2.35 6.45 -52.49 -0.34 2.01 16 27 H 0.40 4.47 8.82 -40.82 -0.36 4.11 16 28 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.17 1.63 8.06 -52.48 -0.42 1.20 16 31 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.20 2.05 8.06 -52.49 -0.42 1.63 16 33 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 34 H 0.11 2.71 6.52 -52.49 -0.34 2.36 16 LS Contribution 303.13 15.07 4.57 4.57 Total: -1.00 -32.94 303.13 -8.44 -41.38 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -3.56 Total: 9.65 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -4.66 Total: -16.00 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.17 Total: -41.78 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.04 Total: 12.76 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.94 -8.44 -41.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310836393.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.712 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds