Wall clock time and date at job start Mon Mar 30 2020 05:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86805 * 119.99509 * 2 1 4 4 H 1.48501 * 109.46913 * 274.98435 * 3 2 1 5 5 H 1.48501 * 109.47406 * 34.99077 * 3 2 1 6 6 H 1.48501 * 109.46518 * 154.99160 * 3 2 1 7 7 C 1.39899 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99793 * 147.60169 * 7 2 1 9 9 C 1.41154 * 120.00358 * 327.59706 * 7 2 1 10 10 C 1.40864 * 120.16702 * 157.94563 * 9 7 2 11 11 C 1.36369 * 119.83172 * 180.02562 * 10 9 7 12 12 C 1.39485 * 120.16723 * 0.02562 * 11 10 9 13 13 N 1.39233 * 119.83485 * 179.97438 * 12 11 10 14 14 C 1.34778 * 119.99865 * 37.76199 * 13 12 11 15 15 O 1.21275 * 120.00062 * 356.70167 * 14 13 12 16 16 C 1.50703 * 119.99576 * 176.70131 * 14 13 12 17 17 N 1.46507 * 109.46646 * 180.02562 * 16 14 13 18 18 C 1.36873 * 126.39631 * 270.02726 * 17 16 14 19 19 C 1.34673 * 106.81837 * 179.97438 * 18 17 16 20 20 N 1.34123 * 108.01632 * 0.02562 * 19 18 17 21 21 C 1.30495 * 109.25874 * 359.97438 * 20 19 18 22 22 C 1.39478 * 120.33194 * 0.25247 * 12 11 10 23 23 C 1.36383 * 120.16809 * 359.44432 * 22 12 11 24 24 H 0.97002 * 120.00073 * 359.97438 * 1 2 3 25 25 H 1.08006 * 120.08513 * 0.02562 * 10 9 7 26 26 H 1.07995 * 119.92269 * 180.02562 * 11 10 9 27 27 H 0.97007 * 120.00114 * 217.76266 * 13 12 11 28 28 H 1.08995 * 109.47647 * 60.00348 * 16 14 13 29 29 H 1.08996 * 109.47043 * 299.99492 * 16 14 13 30 30 H 1.08003 * 126.59352 * 359.97438 * 18 17 16 31 31 H 1.08001 * 125.98806 * 180.26462 * 19 18 17 32 32 H 1.07997 * 125.64590 * 179.97438 * 21 20 19 33 33 H 1.08004 * 119.91966 * 179.72642 * 22 12 11 34 34 H 1.08002 * 120.08146 * 180.25205 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6179 0.0000 4 1 2.3847 2.1073 -1.3948 5 1 1.4967 2.6200 0.8029 6 1 3.5889 1.4121 0.5919 7 6 2.0082 -1.2116 -0.0005 8 1 2.9622 -1.2841 -0.5017 9 6 1.4673 -2.3392 0.6540 10 6 1.8853 -3.6351 0.2934 11 6 1.3579 -4.7197 0.9298 12 6 0.4065 -4.5483 1.9353 13 7 -0.1279 -5.6606 2.5802 14 6 0.6574 -6.7200 2.8586 15 8 1.8142 -6.7296 2.4945 16 6 0.0980 -7.8925 3.6223 17 7 1.1422 -8.9054 3.7956 18 6 1.4196 -9.9400 2.9434 19 6 2.4478 -10.6231 3.4816 20 7 2.7886 -10.0223 4.6313 21 6 2.0109 -8.9926 4.8257 22 6 -0.0166 -3.2685 2.2939 23 6 0.5063 -2.1740 1.6706 24 1 -0.4850 0.8401 0.0004 25 1 2.6217 -3.7694 -0.4853 26 1 1.6776 -5.7139 0.6548 27 1 -1.0654 -5.6730 2.8292 28 1 -0.7369 -8.3220 3.0685 29 1 -0.2484 -7.5575 4.5999 30 1 0.9114 -10.1652 2.0174 31 1 2.9183 -11.4988 3.0593 32 1 2.0545 -8.3217 5.6709 33 1 -0.7570 -3.1437 3.0703 34 1 0.1807 -1.1835 1.9522 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310836393.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:10 Heat of formation + Delta-G solvation = 35.336079 kcal Electronic energy + Delta-G solvation = -19297.420534 eV Core-core repulsion = 16195.561666 eV Total energy + Delta-G solvation = -3101.858868 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.97200 -41.08267 -39.07676 -36.26392 -35.00215 -34.73061 -31.52267 -31.14143 -30.37496 -28.87491 -26.53581 -23.64935 -22.83512 -22.26175 -22.04237 -21.24416 -19.36109 -18.91817 -18.24154 -17.67611 -17.02283 -16.48481 -15.96141 -15.78412 -15.31469 -14.99832 -14.83847 -14.67085 -14.39550 -14.06255 -14.01366 -13.82585 -13.53982 -13.09978 -12.86381 -12.70946 -12.36173 -11.95734 -11.61723 -11.34722 -11.05521 -10.96973 -10.59645 -10.36631 -9.51025 -9.40641 -9.04890 -8.76015 -6.26909 0.77657 1.05741 1.10799 1.35249 1.40267 1.52591 1.71092 1.81055 2.18236 2.25306 2.44687 2.61717 3.64804 3.74433 3.87046 3.89281 4.05157 4.19380 4.37435 4.44479 4.59640 4.78941 4.87533 5.07478 5.12728 5.24503 5.31084 5.40694 5.60775 5.82102 5.84842 5.98770 6.05266 6.23904 6.33247 6.58438 6.68854 6.86170 6.95813 7.14890 7.35939 8.17352 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.046540 B = 0.003437 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.483231 B = 8143.571260 C = 8369.197959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.054 3.946 3 Si 0.970 3.030 4 H -0.260 1.260 5 H -0.259 1.259 6 H -0.263 1.263 7 C -0.507 4.507 8 H 0.072 0.928 9 C 0.085 3.915 10 C -0.250 4.250 11 C -0.076 4.076 12 C -0.009 4.009 13 N -0.633 5.633 14 C 0.478 3.522 15 O -0.571 6.571 16 C 0.099 3.901 17 N -0.446 5.446 18 C -0.046 4.046 19 C -0.060 4.060 20 N -0.538 5.538 21 C 0.182 3.818 22 C -0.095 4.095 23 C -0.191 4.191 24 H 0.295 0.705 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.422 0.578 28 H 0.161 0.839 29 H 0.166 0.834 30 H 0.197 0.803 31 H 0.181 0.819 32 H 0.225 0.775 33 H 0.130 0.870 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.351 -10.366 7.514 14.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.166 4.166 3 Si 0.790 3.210 4 H -0.184 1.184 5 H -0.183 1.183 6 H -0.187 1.187 7 C -0.534 4.534 8 H 0.090 0.910 9 C 0.082 3.918 10 C -0.270 4.270 11 C -0.096 4.096 12 C -0.102 4.102 13 N -0.279 5.279 14 C 0.265 3.735 15 O -0.450 6.450 16 C -0.027 4.027 17 N -0.128 5.128 18 C -0.179 4.179 19 C -0.206 4.206 20 N -0.257 5.257 21 C -0.101 4.101 22 C -0.115 4.115 23 C -0.211 4.211 24 H 0.106 0.894 25 H 0.105 0.895 26 H 0.116 0.884 27 H 0.260 0.740 28 H 0.179 0.821 29 H 0.183 0.817 30 H 0.214 0.786 31 H 0.198 0.802 32 H 0.241 0.759 33 H 0.147 0.853 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.266 -10.434 7.760 14.434 hybrid contribution -0.335 1.109 -0.936 1.489 sum -6.601 -9.325 6.824 13.308 Atomic orbital electron populations 1.69926 1.09268 1.31545 1.31123 1.26685 0.95098 1.04310 0.90491 0.85391 0.79633 0.76252 0.79703 1.18448 1.18251 1.18737 1.19722 1.05770 0.95473 1.32484 0.90975 1.17898 0.90776 0.92210 0.90883 1.20715 1.08000 0.93019 1.05270 1.20379 0.97259 0.97169 0.94753 1.17042 1.05864 0.86463 1.00876 1.42710 1.13410 1.14470 1.57316 1.21660 0.86203 0.85100 0.80576 1.90783 1.19842 1.80514 1.53860 1.21954 0.89731 0.85386 1.05596 1.45171 1.27523 1.21710 1.18440 1.23130 1.03386 0.92183 0.99178 1.22635 0.99452 1.03897 0.94619 1.70215 1.26309 1.09598 1.19540 1.25437 0.90057 0.99140 0.95428 1.20469 1.00610 0.90748 0.99699 1.20677 1.03179 0.97422 0.99793 0.89366 0.89525 0.88440 0.74004 0.82109 0.81691 0.78592 0.80203 0.75918 0.85257 0.88281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.51 11.78 21.82 0.26 -39.25 16 2 C 0.05 2.66 4.77 85.24 0.41 3.06 16 3 Si 0.97 36.89 29.66 68.60 2.03 38.93 16 4 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 5 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.51 -27.54 8.94 23.39 0.21 -27.33 16 8 H 0.07 3.89 8.02 -2.91 -0.02 3.86 16 9 C 0.08 4.63 5.57 -21.28 -0.12 4.51 16 10 C -0.25 -13.14 9.74 22.48 0.22 -12.92 16 11 C -0.08 -3.60 8.59 22.13 0.19 -3.41 16 12 C -0.01 -0.37 6.25 38.57 0.24 -0.13 16 13 N -0.63 -17.46 5.30 -303.11 -1.61 -19.06 16 14 C 0.48 13.08 7.71 87.66 0.68 13.76 16 15 O -0.57 -22.94 14.05 -3.02 -0.04 -22.99 16 16 C 0.10 1.40 6.63 85.63 0.57 1.97 16 17 N -0.45 -9.57 2.24 -533.15 -1.19 -10.77 16 18 C -0.05 -1.02 11.58 83.09 0.96 -0.06 16 19 C -0.06 -1.55 11.87 83.53 0.99 -0.56 16 20 N -0.54 -16.08 11.25 -200.32 -2.25 -18.33 16 21 C 0.18 4.49 12.56 180.27 2.26 6.75 16 22 C -0.10 -3.99 9.90 22.14 0.22 -3.78 16 23 C -0.19 -9.55 8.74 22.48 0.20 -9.36 16 24 H 0.30 12.95 8.30 -92.71 -0.77 12.18 16 25 H 0.09 4.49 8.06 -2.91 -0.02 4.47 16 26 H 0.10 4.65 6.45 -2.91 -0.02 4.63 16 27 H 0.42 7.37 8.82 -92.70 -0.82 6.56 16 28 H 0.16 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.17 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.20 3.12 8.06 -2.91 -0.02 3.09 16 31 H 0.18 3.80 8.06 -2.91 -0.02 3.77 16 32 H 0.22 4.02 8.06 -2.91 -0.02 4.00 16 33 H 0.13 4.33 8.06 -2.91 -0.02 4.30 16 34 H 0.10 5.04 6.52 -2.91 -0.02 5.02 16 Total: -1.00 -76.29 303.13 4.54 -71.75 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 0.32 Total: 27.22 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 7.02 Total: -27.50 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -4.80 Total: -87.41 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.04 Total: -22.99 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.93 kcal Total: -76.29 4.54 -71.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310836393.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.086 kcal (2) G-P(sol) polarization free energy of solvation -76.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds