Wall clock time and date at job start Mon Mar 30 2020 04:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 N 1.31452 * 126.26677 * 341.30999 * 3 2 1 5 5 N 1.39847 * 109.89670 * 179.54053 * 4 3 2 6 6 C 1.46505 * 125.33277 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.46941 * 270.65722 * 6 5 4 8 8 O 1.42907 * 109.46963 * 179.97438 * 7 6 5 9 9 C 1.42900 * 114.00290 * 180.02562 * 8 7 6 10 10 C 1.50691 * 109.47327 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00266 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00141 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99989 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00034 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47229 * 89.99658 * 14 12 10 16 16 H 1.48499 * 109.47258 * 209.99871 * 14 12 10 17 17 H 1.48500 * 109.47209 * 329.99918 * 14 12 10 18 18 C 1.37220 * 109.33223 * 0.55097 * 5 4 3 19 19 C 1.39305 * 133.62647 * 179.39385 * 18 5 4 20 20 C 1.36628 * 119.85112 * 180.02562 * 19 18 5 21 21 C 1.38895 * 120.76630 * 0.02562 * 20 19 18 22 22 C 1.36582 * 120.57417 * 359.97037 * 21 20 19 23 23 C 1.39632 * 119.66827 * 0.28534 * 22 21 20 24 24 H 1.08992 * 109.46600 * 30.65974 * 6 5 4 25 25 H 1.09004 * 109.47003 * 150.65718 * 6 5 4 26 26 H 1.08992 * 109.47680 * 299.99591 * 7 6 5 27 27 H 1.08998 * 109.47561 * 60.00503 * 7 6 5 28 28 H 1.08997 * 109.47342 * 300.00827 * 9 8 7 29 29 H 1.09004 * 109.46723 * 60.00050 * 9 8 7 30 30 H 0.96999 * 119.99483 * 180.02562 * 13 12 10 31 31 H 1.07993 * 120.07858 * 0.03191 * 19 18 5 32 32 H 1.07999 * 119.61514 * 180.02562 * 20 19 18 33 33 H 1.08001 * 119.71079 * 180.02562 * 21 20 19 34 34 H 1.08002 * 120.16141 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3460 -1.0030 0.3396 5 7 4.6876 -0.6324 0.2033 6 6 5.8378 -1.4928 0.4918 7 6 6.2368 -1.3353 1.9604 8 8 7.3583 -2.1750 2.2420 9 6 7.8131 -2.1033 3.5948 10 6 8.9926 -3.0232 3.7777 11 1 9.3587 -3.6042 2.9441 12 6 9.6044 -3.1231 5.0092 13 7 9.1584 -2.4160 6.0244 14 14 11.0670 -4.2629 5.2358 15 1 12.3214 -3.5214 4.9497 16 1 11.0944 -4.7610 6.6345 17 1 10.9479 -5.4124 4.3032 18 6 4.7580 0.6675 -0.2306 19 6 5.8144 1.5294 -0.5167 20 6 5.5575 2.8023 -0.9416 21 6 4.2518 3.2511 -1.0924 22 6 3.1978 2.4266 -0.8189 23 6 3.4361 1.1233 -0.3781 24 1 5.5722 -2.5317 0.2969 25 1 6.6748 -1.2061 -0.1449 26 1 6.5024 -0.2964 2.1554 27 1 5.3999 -1.6220 2.5971 28 1 8.1115 -1.0803 3.8240 29 1 7.0085 -2.4058 4.2650 30 1 9.5891 -2.4861 6.8907 31 1 6.8340 1.1922 -0.4030 32 1 6.3794 3.4671 -1.1627 33 1 4.0684 4.2605 -1.4298 34 1 2.1852 2.7827 -0.9381 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338562678.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:05 Heat of formation + Delta-G solvation = 73.986776 kcal Electronic energy + Delta-G solvation = -18884.643813 eV Core-core repulsion = 15784.460966 eV Total energy + Delta-G solvation = -3100.182848 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.68256 -37.70155 -37.18358 -36.70345 -34.07821 -32.76964 -31.00329 -30.27592 -28.86328 -27.02437 -24.37528 -23.43639 -22.70889 -22.38645 -21.21515 -18.61780 -17.39132 -16.63060 -16.58114 -15.64477 -15.52678 -15.35329 -15.21323 -14.49428 -14.28110 -14.12662 -13.85347 -13.48149 -13.32034 -13.26190 -12.79975 -12.39254 -12.22108 -11.89992 -11.43828 -11.32854 -11.12524 -10.98738 -10.94488 -10.81179 -10.33065 -10.10210 -9.24814 -9.04777 -9.00564 -8.34153 -8.22219 -6.19927 -4.22942 0.42059 1.12332 1.51056 1.73123 2.33463 3.08088 3.24991 3.30376 3.32513 3.35611 3.54022 4.05704 4.27364 4.44190 4.61522 4.73470 4.74991 5.04903 5.05837 5.13404 5.16801 5.38504 5.42574 5.49477 5.63099 5.84268 5.94184 5.97777 6.10827 6.23248 6.46305 6.68086 6.93880 7.06314 7.13077 7.28081 7.67769 8.00927 8.36183 8.88329 9.42245 10.91430 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.025690 B = 0.003400 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.650118 B = 8233.905833 C = 8895.709085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C 0.301 3.699 3 C 0.145 3.855 4 N -0.182 5.182 5 N -0.371 5.371 6 C 0.138 3.862 7 C 0.048 3.952 8 O -0.392 6.392 9 C 0.198 3.802 10 C -0.519 4.519 11 H 0.068 0.932 12 C 0.057 3.943 13 N -0.897 5.897 14 Si 0.910 3.090 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.271 1.271 18 C 0.132 3.868 19 C -0.126 4.126 20 C -0.069 4.069 21 C -0.147 4.147 22 C -0.047 4.047 23 C -0.144 4.144 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.008 0.992 29 H 0.008 0.992 30 H 0.265 0.735 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.381 11.086 -14.872 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.063 5.063 2 C -0.017 4.017 3 C -0.030 4.030 4 N -0.002 5.002 5 N -0.162 5.162 6 C 0.017 3.983 7 C -0.031 4.031 8 O -0.312 6.312 9 C 0.124 3.876 10 C -0.557 4.557 11 H 0.086 0.914 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.737 3.263 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.195 1.195 18 C 0.018 3.982 19 C -0.148 4.148 20 C -0.090 4.090 21 C -0.167 4.167 22 C -0.067 4.067 23 C -0.153 4.153 24 H 0.126 0.874 25 H 0.125 0.875 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.075 0.925 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.773 9.650 -14.352 19.865 hybrid contribution 1.118 0.317 0.406 1.231 sum -8.655 9.967 -13.946 19.203 Atomic orbital electron populations 1.81301 1.10660 1.06602 1.07696 1.23585 0.89907 0.94164 0.94087 1.17845 0.86401 0.92868 1.05909 1.77115 0.87963 1.20915 1.14163 1.48411 1.03170 1.09403 1.55197 1.21685 0.83528 0.95193 0.97851 1.22507 0.91600 0.95429 0.93592 1.87796 1.45543 1.64019 1.33795 1.20274 0.94427 0.96875 0.76045 1.21020 1.13375 1.25035 0.96320 0.91373 1.24959 0.97889 0.96235 0.95343 1.69960 1.41292 1.40756 1.01540 0.86302 0.81888 0.80655 0.77456 1.20379 1.21011 1.19546 1.18807 0.95252 0.85657 0.98469 1.20026 0.97442 0.93281 1.04037 1.20807 0.97289 0.94658 0.96247 1.20735 0.92203 1.00263 1.03465 1.20293 0.99863 0.90585 0.95984 1.19340 0.90500 0.95271 1.10191 0.87363 0.87462 0.93767 0.93417 0.97436 0.97411 0.92496 0.84702 0.84824 0.85221 0.85380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -5.10 18.54 41.84 0.78 -4.32 16 2 C 0.30 3.67 15.95 -22.47 -0.36 3.32 16 3 C 0.15 1.80 7.16 -82.62 -0.59 1.21 16 4 N -0.18 -2.54 12.46 33.52 0.42 -2.12 16 5 N -0.37 -4.90 3.65 -58.71 -0.21 -5.11 16 6 C 0.14 1.83 6.72 -4.04 -0.03 1.80 16 7 C 0.05 0.82 6.26 37.15 0.23 1.05 16 8 O -0.39 -8.79 10.33 -35.23 -0.36 -9.15 16 9 C 0.20 5.22 5.69 36.00 0.20 5.43 16 10 C -0.52 -14.79 9.43 -34.44 -0.32 -15.11 16 11 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 14 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 C 0.13 1.56 6.86 -84.16 -0.58 0.99 16 19 C -0.13 -1.22 9.95 -39.77 -0.40 -1.62 16 20 C -0.07 -0.54 9.96 -39.92 -0.40 -0.94 16 21 C -0.15 -1.10 9.97 -39.94 -0.40 -1.49 16 22 C -0.05 -0.41 10.06 -39.66 -0.40 -0.81 16 23 C -0.14 -1.63 6.32 -104.99 -0.66 -2.29 16 24 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 25 H 0.11 1.21 8.12 -51.93 -0.42 0.79 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 316.08 15.07 4.76 4.76 Total: -1.00 -31.37 316.08 -6.47 -37.84 By element: Atomic # 1 Polarization: -1.87 SS G_CDS: -3.77 Total: -5.64 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -3.79 Total: -6.95 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 1.72 Total: -37.08 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.36 Total: -9.15 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.37 -6.47 -37.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338562678.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.829 kcal (2) G-P(sol) polarization free energy of solvation -31.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds