Wall clock time and date at job start Mon Mar 30 2020 04:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 N 1.31452 * 126.26677 * 341.30999 * 3 2 1 5 5 N 1.39847 * 109.89670 * 179.54053 * 4 3 2 6 6 C 1.46505 * 125.33277 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.46941 * 270.65722 * 6 5 4 8 8 O 1.42907 * 109.46963 * 179.97438 * 7 6 5 9 9 C 1.42900 * 114.00290 * 180.02562 * 8 7 6 10 10 C 1.50691 * 109.47327 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00266 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00141 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99989 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00034 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47229 * 89.99658 * 14 12 10 16 16 H 1.48499 * 109.47258 * 209.99871 * 14 12 10 17 17 H 1.48500 * 109.47209 * 329.99918 * 14 12 10 18 18 C 1.37220 * 109.33223 * 0.55097 * 5 4 3 19 19 C 1.39305 * 133.62647 * 179.39385 * 18 5 4 20 20 C 1.36628 * 119.85112 * 180.02562 * 19 18 5 21 21 C 1.38895 * 120.76630 * 0.02562 * 20 19 18 22 22 C 1.36582 * 120.57417 * 359.97037 * 21 20 19 23 23 C 1.39632 * 119.66827 * 0.28534 * 22 21 20 24 24 H 1.08992 * 109.46600 * 30.65974 * 6 5 4 25 25 H 1.09004 * 109.47003 * 150.65718 * 6 5 4 26 26 H 1.08992 * 109.47680 * 299.99591 * 7 6 5 27 27 H 1.08998 * 109.47561 * 60.00503 * 7 6 5 28 28 H 1.08997 * 109.47342 * 300.00827 * 9 8 7 29 29 H 1.09004 * 109.46723 * 60.00050 * 9 8 7 30 30 H 0.96999 * 119.99483 * 180.02562 * 13 12 10 31 31 H 1.07993 * 120.07858 * 0.03191 * 19 18 5 32 32 H 1.07999 * 119.61514 * 180.02562 * 20 19 18 33 33 H 1.08001 * 119.71079 * 180.02562 * 21 20 19 34 34 H 1.08002 * 120.16141 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3460 -1.0030 0.3396 5 7 4.6876 -0.6324 0.2033 6 6 5.8378 -1.4928 0.4918 7 6 6.2368 -1.3353 1.9604 8 8 7.3583 -2.1750 2.2420 9 6 7.8131 -2.1033 3.5948 10 6 8.9926 -3.0232 3.7777 11 1 9.3587 -3.6042 2.9441 12 6 9.6044 -3.1231 5.0092 13 7 9.1584 -2.4160 6.0244 14 14 11.0670 -4.2629 5.2358 15 1 12.3214 -3.5214 4.9497 16 1 11.0944 -4.7610 6.6345 17 1 10.9479 -5.4124 4.3032 18 6 4.7580 0.6675 -0.2306 19 6 5.8144 1.5294 -0.5167 20 6 5.5575 2.8023 -0.9416 21 6 4.2518 3.2511 -1.0924 22 6 3.1978 2.4266 -0.8189 23 6 3.4361 1.1233 -0.3781 24 1 5.5722 -2.5317 0.2969 25 1 6.6748 -1.2061 -0.1449 26 1 6.5024 -0.2964 2.1554 27 1 5.3999 -1.6220 2.5971 28 1 8.1115 -1.0803 3.8240 29 1 7.0085 -2.4058 4.2650 30 1 9.5891 -2.4861 6.8907 31 1 6.8340 1.1922 -0.4030 32 1 6.3794 3.4671 -1.1627 33 1 4.0684 4.2605 -1.4298 34 1 2.1852 2.7827 -0.9381 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338562678.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:05 Heat of formation + Delta-G solvation = 55.147814 kcal Electronic energy + Delta-G solvation = -18885.460732 eV Core-core repulsion = 15784.460966 eV Total energy + Delta-G solvation = -3100.999766 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.54918 -38.91674 -38.35460 -37.81614 -35.35595 -34.68888 -31.91887 -31.07109 -30.16401 -28.81992 -25.56285 -24.55564 -24.23590 -23.49678 -22.21175 -19.47486 -18.70102 -18.22983 -17.83490 -16.89796 -16.81726 -16.73754 -16.18110 -16.14226 -15.31298 -15.10477 -15.02532 -14.60024 -14.51191 -14.29459 -14.12230 -13.92804 -13.02799 -12.98613 -12.95837 -12.81121 -12.54743 -12.46892 -12.17704 -12.08335 -11.97564 -11.35369 -11.15135 -10.93702 -10.36693 -9.81761 -9.04659 -8.34340 -6.47589 -0.43451 0.36804 0.67718 0.77246 1.34639 1.41726 1.44048 1.56246 2.14040 2.31816 2.39205 2.80853 3.00236 3.03988 3.32961 3.55448 3.87753 3.98552 4.07296 4.08973 4.22279 4.40481 4.42864 4.59221 4.61620 4.80272 4.82264 4.95437 5.10230 5.13502 5.46566 5.51756 5.57446 5.68512 5.89317 5.90354 6.08241 6.22002 6.40694 6.73134 7.24220 8.77900 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.025690 B = 0.003400 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.650118 B = 8233.905833 C = 8895.709085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C 0.316 3.684 3 C 0.147 3.853 4 N -0.216 5.216 5 N -0.380 5.380 6 C 0.151 3.849 7 C 0.047 3.953 8 O -0.399 6.399 9 C 0.211 3.789 10 C -0.550 4.550 11 H 0.068 0.932 12 C 0.006 3.994 13 N -0.931 5.931 14 Si 0.985 3.015 15 H -0.266 1.266 16 H -0.277 1.277 17 H -0.263 1.263 18 C 0.114 3.886 19 C -0.142 4.142 20 C -0.059 4.059 21 C -0.137 4.137 22 C -0.054 4.054 23 C -0.156 4.156 24 H 0.110 0.890 25 H 0.131 0.869 26 H 0.048 0.952 27 H 0.034 0.966 28 H -0.008 1.008 29 H -0.016 1.016 30 H 0.271 0.729 31 H 0.142 0.858 32 H 0.165 0.835 33 H 0.163 0.837 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.307 12.303 -16.186 21.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.081 5.081 2 C -0.002 4.002 3 C -0.029 4.029 4 N -0.035 5.035 5 N -0.171 5.171 6 C 0.030 3.970 7 C -0.032 4.032 8 O -0.318 6.318 9 C 0.136 3.864 10 C -0.588 4.588 11 H 0.086 0.914 12 C -0.192 4.192 13 N -0.570 5.570 14 Si 0.808 3.192 15 H -0.191 1.191 16 H -0.202 1.202 17 H -0.187 1.187 18 C 0.001 3.999 19 C -0.164 4.164 20 C -0.079 4.079 21 C -0.156 4.156 22 C -0.074 4.074 23 C -0.165 4.165 24 H 0.128 0.872 25 H 0.149 0.851 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.009 0.991 29 H 0.002 0.998 30 H 0.080 0.920 31 H 0.160 0.840 32 H 0.183 0.817 33 H 0.181 0.819 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.723 10.887 -15.691 20.996 hybrid contribution 0.714 0.108 0.761 1.048 sum -8.009 10.995 -14.931 20.198 Atomic orbital electron populations 1.81307 1.11080 1.07350 1.08392 1.23514 0.89741 0.93479 0.93456 1.17939 0.86253 0.93277 1.05416 1.77040 0.88658 1.22096 1.15739 1.48282 1.02616 1.10119 1.56118 1.21502 0.84588 0.95810 0.95061 1.22696 0.89388 0.94686 0.96392 1.87736 1.47347 1.65335 1.31342 1.19887 0.93422 0.95521 0.77599 1.21389 1.14476 1.25931 0.96960 0.91376 1.25986 1.00897 0.97664 0.94684 1.70073 1.42755 1.42020 1.02165 0.85151 0.77922 0.78474 0.77693 1.19059 1.20247 1.18680 1.19177 0.96272 0.85273 0.99185 1.20302 0.97333 0.93939 1.04795 1.21254 0.98566 0.94055 0.94059 1.21178 0.91546 1.01368 1.01519 1.20614 1.01469 0.89646 0.95677 1.19550 0.89943 0.96045 1.11005 0.87150 0.85117 0.93351 0.94766 0.99053 0.99806 0.91992 0.83975 0.81724 0.81901 0.83607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -10.66 18.54 19.00 0.35 -10.30 16 2 C 0.32 7.74 15.95 88.33 1.41 9.15 16 3 C 0.15 3.66 7.16 42.71 0.31 3.97 16 4 N -0.22 -6.16 12.46 -47.86 -0.60 -6.76 16 5 N -0.38 -10.07 3.65 -339.67 -1.24 -11.31 16 6 C 0.15 4.02 6.72 86.38 0.58 4.60 16 7 C 0.05 1.66 6.26 71.98 0.45 2.11 16 8 O -0.40 -18.27 10.33 -148.98 -1.54 -19.81 16 9 C 0.21 11.52 5.69 71.23 0.41 11.92 16 10 C -0.55 -31.77 9.43 25.60 0.24 -31.53 16 11 H 0.07 3.84 7.81 -2.91 -0.02 3.81 16 12 C 0.01 0.36 5.46 84.65 0.46 0.82 16 13 N -0.93 -55.13 13.29 21.45 0.28 -54.85 16 14 Si 0.99 43.15 29.54 68.60 2.03 45.17 16 15 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 16 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 17 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 18 C 0.11 2.60 6.86 39.14 0.27 2.87 16 19 C -0.14 -2.49 9.95 22.15 0.22 -2.27 16 20 C -0.06 -0.72 9.96 22.05 0.22 -0.50 16 21 C -0.14 -1.54 9.97 22.04 0.22 -1.32 16 22 C -0.05 -0.82 10.06 22.22 0.22 -0.60 16 23 C -0.16 -3.40 6.32 -20.11 -0.13 -3.53 16 24 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 25 H 0.13 2.82 8.12 -2.38 -0.02 2.80 16 26 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 28 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 29 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 30 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 31 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 32 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 33 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16 34 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -68.64 316.08 5.29 -63.35 By element: Atomic # 1 Polarization: -2.30 SS G_CDS: 1.12 Total: -1.19 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 4.88 Total: -4.31 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -1.20 Total: -83.22 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -1.54 Total: -19.81 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -68.64 5.29 -63.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338562678.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.499 kcal (2) G-P(sol) polarization free energy of solvation -68.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds