Wall clock time and date at job start Mon Mar 30 2020 04:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46909 * 2 1 4 4 Cl 1.80304 * 109.46743 * 240.00406 * 2 1 3 5 5 C 1.50697 * 109.47366 * 120.00189 * 2 1 3 6 6 N 1.31427 * 119.32886 * 74.99569 * 5 2 1 7 7 C 1.34687 * 120.30353 * 179.97438 * 6 5 2 8 8 N 1.31250 * 120.48309 * 179.97438 * 7 6 5 9 9 N 1.38210 * 119.03301 * 0.02562 * 7 6 5 10 10 H 0.97001 * 120.62326 * 179.97438 * 9 7 6 11 11 C 1.36516 * 118.74361 * 0.24846 * 9 7 6 12 12 N 1.36532 * 120.19003 * 179.74406 * 11 9 7 13 13 C 1.46502 * 120.00029 * 0.02562 * 12 11 9 14 14 C 1.46498 * 120.00422 * 179.97438 * 12 11 9 15 15 C 1.50705 * 109.47417 * 90.00031 * 14 12 11 16 16 H 1.08004 * 119.99355 * 0.02562 * 15 14 12 17 17 C 1.37871 * 120.00021 * 180.02562 * 15 14 12 18 18 N 1.31512 * 120.00563 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99736 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46802 * 59.99795 * 19 17 15 21 21 H 1.48501 * 109.46883 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46911 * 299.99621 * 19 17 15 23 23 N 1.32356 * 119.61971 * 359.51373 * 11 9 7 24 24 H 1.09007 * 109.47086 * 299.99894 * 1 2 3 25 25 H 1.09004 * 109.47368 * 59.99502 * 1 2 3 26 26 H 1.08991 * 109.47202 * 179.97438 * 1 2 3 27 27 H 0.97000 * 120.00218 * 0.02973 * 8 7 6 28 28 H 1.09003 * 109.47114 * 89.99849 * 13 12 11 29 29 H 1.08996 * 109.47473 * 209.99599 * 13 12 11 30 30 H 1.09002 * 109.47415 * 329.99761 * 13 12 11 31 31 H 1.08998 * 109.47733 * 210.00445 * 14 12 11 32 32 H 1.09004 * 109.46919 * 330.00091 * 14 12 11 33 33 H 0.96999 * 120.00269 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 17 2.1309 -0.8499 -1.4723 5 6 2.0324 -0.7104 1.2304 6 7 1.9673 -2.0218 1.2882 7 6 2.4111 -2.6768 2.3782 8 7 2.3474 -3.9864 2.4399 9 7 2.9337 -1.9499 3.4311 10 1 3.2596 -2.3980 4.2273 11 6 2.9773 -0.5891 3.3317 12 7 3.4826 0.1584 4.3565 13 6 3.9806 -0.4998 5.5669 14 6 3.5279 1.6184 4.2452 15 6 2.2480 2.2033 4.7845 16 1 1.4780 1.5525 5.1718 17 6 2.0601 3.5692 4.7835 18 7 2.9979 4.3617 4.3124 19 14 0.4738 4.2942 5.4527 20 1 0.3178 3.9116 6.8790 21 1 0.5198 5.7742 5.3398 22 1 -0.6767 3.7732 4.6716 23 7 2.5310 0.0013 2.2344 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.9790 -4.4896 1.6970 28 1 5.0410 -0.7232 5.4489 29 1 3.8415 0.1605 6.4229 30 1 3.4300 -1.4263 5.7295 31 1 4.3722 2.0006 4.8191 32 1 3.6432 1.8996 3.1984 33 1 2.8658 5.3227 4.3120 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380971771.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:04 Heat of formation + Delta-G solvation = 74.685708 kcal Electronic energy + Delta-G solvation = -18792.036972 eV Core-core repulsion = 15721.744333 eV Total energy + Delta-G solvation = -3070.292638 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.089 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.03559 -37.39747 -36.20280 -35.00711 -33.54690 -32.53454 -31.73266 -30.27524 -28.15484 -26.73061 -24.78336 -23.68354 -21.45928 -20.87090 -18.68862 -18.18140 -16.95657 -16.62346 -15.53930 -15.31668 -15.02112 -14.59170 -14.36673 -14.04182 -13.69923 -13.25522 -12.45601 -12.25555 -11.98379 -11.64754 -11.58218 -11.52670 -11.12525 -11.06660 -10.99804 -10.75487 -10.41025 -10.32498 -10.18973 -9.89402 -9.31879 -8.88522 -8.63032 -8.30545 -7.44870 -6.26150 -4.32736 1.13462 2.26680 2.41769 2.54453 3.18779 3.24769 3.26633 3.38619 4.04840 4.21801 4.26773 4.70880 5.05737 5.06382 5.09041 5.26191 5.41833 5.63300 5.68509 5.83892 5.88744 5.94350 6.10173 6.23840 6.52832 6.95940 7.09383 7.31843 7.55003 7.71388 7.85940 7.91740 8.55655 8.68243 8.92012 9.32826 10.81511 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.016453 B = 0.006613 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.457150 B = 4232.805465 C = 5280.901920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 H 0.130 0.870 4 Cl -0.159 7.159 5 C 0.423 3.577 6 N -0.624 5.624 7 C 0.571 3.429 8 N -0.783 5.783 9 N -0.666 5.666 10 H 0.415 0.585 11 C 0.672 3.328 12 N -0.549 5.549 13 C 0.075 3.925 14 C 0.252 3.748 15 C -0.534 4.534 16 H 0.057 0.943 17 C 0.069 3.931 18 N -0.889 5.889 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.275 1.275 23 N -0.617 5.617 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.352 0.648 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.365 -6.376 -2.856 6.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.023 3.977 3 H 0.148 0.852 4 Cl -0.133 7.133 5 C 0.144 3.856 6 N -0.364 5.364 7 C 0.200 3.800 8 N -0.426 5.426 9 N -0.303 5.303 10 H 0.254 0.746 11 C 0.314 3.686 12 N -0.258 5.258 13 C -0.069 4.069 14 C 0.134 3.866 15 C -0.573 4.573 16 H 0.075 0.925 17 C -0.135 4.135 18 N -0.527 5.527 19 Si 0.726 3.274 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.201 1.201 23 N -0.361 5.361 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.170 0.830 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.204 -6.610 -2.837 7.196 hybrid contribution -0.762 0.075 0.601 0.974 sum -0.967 -6.535 -2.236 6.974 Atomic orbital electron populations 1.22049 0.90674 1.04073 1.03756 1.22556 0.97219 0.96967 0.80999 0.85180 1.98717 1.90208 1.82101 1.42269 1.22492 0.84359 0.87487 0.91292 1.70102 1.32223 1.09606 1.24502 1.19960 0.88019 0.91083 0.80952 1.69708 1.34913 1.01024 1.36928 1.43361 1.60174 1.05718 1.21062 0.74582 1.19143 0.83682 0.77705 0.88100 1.47106 1.56916 1.09788 1.12017 1.21923 0.98735 0.98266 0.87941 1.19705 0.97956 0.68408 1.00501 1.21226 1.02027 0.91813 1.42187 0.92458 1.24856 0.96884 0.96730 0.95010 1.69894 1.33247 1.04449 1.45108 0.86544 0.83429 0.78020 0.79367 1.20269 1.21008 1.20065 1.68609 1.29955 1.36065 1.01482 0.90215 0.90455 0.90791 0.83028 0.91864 0.88469 0.92190 0.93897 0.91867 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.30 37.16 0.35 -1.58 16 2 C 0.07 1.04 3.76 -27.88 -0.10 0.94 16 3 H 0.13 1.92 8.12 -51.93 -0.42 1.50 16 4 Cl -0.16 -2.38 28.24 -51.86 -1.46 -3.84 16 5 C 0.42 7.72 6.52 -156.65 -1.02 6.70 16 6 N -0.62 -11.64 9.98 -11.47 -0.11 -11.75 16 7 C 0.57 10.56 8.78 -321.79 -2.82 7.74 16 8 N -0.78 -14.18 14.19 29.90 0.42 -13.75 16 9 N -0.67 -11.09 5.35 -14.36 -0.08 -11.17 16 10 H 0.41 5.80 6.73 -40.82 -0.27 5.53 16 11 C 0.67 12.41 8.23 -320.26 -2.64 9.77 16 12 N -0.55 -9.78 2.90 -184.75 -0.54 -10.31 16 13 C 0.07 0.96 10.25 59.85 0.61 1.57 16 14 C 0.25 5.53 5.16 -5.19 -0.03 5.51 16 15 C -0.53 -13.12 9.39 -34.44 -0.32 -13.44 16 16 H 0.06 1.43 7.81 -52.48 -0.41 1.02 16 17 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -23.61 13.29 55.43 0.74 -22.87 16 19 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 N -0.62 -12.23 9.05 -11.22 -0.10 -12.33 16 24 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.35 6.13 8.91 -40.82 -0.36 5.76 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.10 1.24 8.07 -51.93 -0.42 0.82 16 30 H 0.06 0.64 6.42 -51.93 -0.33 0.31 16 31 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 32 H 0.06 1.54 7.35 -51.93 -0.38 1.16 16 33 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 303.07 15.07 4.57 4.57 Total: -1.00 -28.50 303.07 -11.51 -40.01 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -3.85 Total: 7.74 kcal Atomic # 6 Polarization: 24.93 SS G_CDS: -6.08 Total: 18.85 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: 0.33 Total: -82.19 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 17 Polarization: -2.38 SS G_CDS: -1.46 Total: -3.84 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.50 -11.51 -40.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380971771.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.694 kcal (2) G-P(sol) polarization free energy of solvation -28.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds