Wall clock time and date at job start Mon Mar 30 2020 04:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46909 * 2 1 4 4 Cl 1.80304 * 109.46743 * 240.00406 * 2 1 3 5 5 C 1.50697 * 109.47366 * 120.00189 * 2 1 3 6 6 N 1.31427 * 119.32886 * 74.99569 * 5 2 1 7 7 C 1.34687 * 120.30353 * 179.97438 * 6 5 2 8 8 N 1.31250 * 120.48309 * 179.97438 * 7 6 5 9 9 N 1.38210 * 119.03301 * 0.02562 * 7 6 5 10 10 H 0.97001 * 120.62326 * 179.97438 * 9 7 6 11 11 C 1.36516 * 118.74361 * 0.24846 * 9 7 6 12 12 N 1.36532 * 120.19003 * 179.74406 * 11 9 7 13 13 C 1.46502 * 120.00029 * 0.02562 * 12 11 9 14 14 C 1.46498 * 120.00422 * 179.97438 * 12 11 9 15 15 C 1.50705 * 109.47417 * 90.00031 * 14 12 11 16 16 H 1.08004 * 119.99355 * 0.02562 * 15 14 12 17 17 C 1.37871 * 120.00021 * 180.02562 * 15 14 12 18 18 N 1.31512 * 120.00563 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99736 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46802 * 59.99795 * 19 17 15 21 21 H 1.48501 * 109.46883 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46911 * 299.99621 * 19 17 15 23 23 N 1.32356 * 119.61971 * 359.51373 * 11 9 7 24 24 H 1.09007 * 109.47086 * 299.99894 * 1 2 3 25 25 H 1.09004 * 109.47368 * 59.99502 * 1 2 3 26 26 H 1.08991 * 109.47202 * 179.97438 * 1 2 3 27 27 H 0.97000 * 120.00218 * 0.02973 * 8 7 6 28 28 H 1.09003 * 109.47114 * 89.99849 * 13 12 11 29 29 H 1.08996 * 109.47473 * 209.99599 * 13 12 11 30 30 H 1.09002 * 109.47415 * 329.99761 * 13 12 11 31 31 H 1.08998 * 109.47733 * 210.00445 * 14 12 11 32 32 H 1.09004 * 109.46919 * 330.00091 * 14 12 11 33 33 H 0.96999 * 120.00269 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 17 2.1309 -0.8499 -1.4723 5 6 2.0324 -0.7104 1.2304 6 7 1.9673 -2.0218 1.2882 7 6 2.4111 -2.6768 2.3782 8 7 2.3474 -3.9864 2.4399 9 7 2.9337 -1.9499 3.4311 10 1 3.2596 -2.3980 4.2273 11 6 2.9773 -0.5891 3.3317 12 7 3.4826 0.1584 4.3565 13 6 3.9806 -0.4998 5.5669 14 6 3.5279 1.6184 4.2452 15 6 2.2480 2.2033 4.7845 16 1 1.4780 1.5525 5.1718 17 6 2.0601 3.5692 4.7835 18 7 2.9979 4.3617 4.3124 19 14 0.4738 4.2942 5.4527 20 1 0.3178 3.9116 6.8790 21 1 0.5198 5.7742 5.3398 22 1 -0.6767 3.7732 4.6716 23 7 2.5310 0.0013 2.2344 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.9790 -4.4896 1.6970 28 1 5.0410 -0.7232 5.4489 29 1 3.8415 0.1605 6.4229 30 1 3.4300 -1.4263 5.7295 31 1 4.3722 2.0006 4.8191 32 1 3.6432 1.8996 3.1984 33 1 2.8658 5.3227 4.3120 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380971771.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:03 Heat of formation + Delta-G solvation = 61.791003 kcal Electronic energy + Delta-G solvation = -18792.596128 eV Core-core repulsion = 15721.744333 eV Total energy + Delta-G solvation = -3070.851794 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.43944 -38.79680 -37.48103 -36.33499 -35.20920 -34.14879 -32.98108 -31.66957 -29.77897 -28.09000 -26.04211 -25.39151 -22.87320 -22.24910 -20.07721 -19.57679 -18.72095 -18.14514 -16.96931 -16.69955 -16.67365 -15.97655 -15.57630 -15.42884 -15.09554 -14.47568 -14.07539 -13.52533 -13.32344 -13.09435 -12.97562 -12.81664 -12.70553 -12.59919 -12.37755 -12.30875 -12.11445 -11.69102 -11.62741 -11.38525 -10.73282 -10.58712 -10.31224 -9.76120 -8.90188 -8.18114 -6.30697 -0.25714 0.91600 1.00656 1.21905 1.43737 1.46261 1.52777 2.08103 2.42484 2.74681 2.83314 3.14573 3.32699 3.90698 3.98335 4.10089 4.38311 4.48311 4.51480 4.60858 4.79277 4.80817 4.83052 5.01537 5.16087 5.24921 5.54041 5.71531 5.76339 6.03804 6.16495 6.46413 6.76037 7.15120 7.37669 7.50514 8.88045 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.016453 B = 0.006613 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.457150 B = 4232.805465 C = 5280.901920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.067 3.933 3 H 0.132 0.868 4 Cl -0.156 7.156 5 C 0.418 3.582 6 N -0.633 5.633 7 C 0.559 3.441 8 N -0.783 5.783 9 N -0.651 5.651 10 H 0.428 0.572 11 C 0.667 3.333 12 N -0.551 5.551 13 C 0.068 3.932 14 C 0.269 3.731 15 C -0.537 4.537 16 H 0.051 0.949 17 C 0.024 3.976 18 N -0.919 5.919 19 Si 0.954 3.046 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.277 1.277 23 N -0.646 5.646 24 H 0.072 0.928 25 H 0.103 0.897 26 H 0.069 0.931 27 H 0.354 0.646 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.870 -6.942 -2.378 7.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.021 3.979 3 H 0.150 0.850 4 Cl -0.130 7.130 5 C 0.139 3.861 6 N -0.373 5.373 7 C 0.188 3.812 8 N -0.426 5.426 9 N -0.290 5.290 10 H 0.269 0.731 11 C 0.307 3.693 12 N -0.260 5.260 13 C -0.074 4.074 14 C 0.149 3.851 15 C -0.576 4.576 16 H 0.069 0.931 17 C -0.176 4.176 18 N -0.558 5.558 19 Si 0.779 3.221 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.202 1.202 23 N -0.391 5.391 24 H 0.091 0.909 25 H 0.122 0.878 26 H 0.088 0.912 27 H 0.172 0.828 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.700 -7.215 -2.328 7.614 hybrid contribution -0.568 0.193 0.444 0.747 sum -1.268 -7.022 -1.883 7.380 Atomic orbital electron populations 1.22020 0.88944 1.04091 1.04669 1.22688 0.98498 0.96592 0.80084 0.85023 1.98716 1.90303 1.82116 1.41853 1.22946 0.83832 0.87510 0.91808 1.70110 1.32646 1.09760 1.24825 1.20153 0.88330 0.91321 0.81423 1.69714 1.34955 1.00862 1.37113 1.43141 1.59748 1.04885 1.21219 0.73061 1.19146 0.83708 0.78377 0.88023 1.46998 1.57051 1.08570 1.13384 1.22241 1.00535 0.98799 0.85819 1.19195 0.96699 0.70796 0.98435 1.21456 1.02672 0.91906 1.41517 0.93088 1.25539 0.99401 0.97282 0.95394 1.69987 1.34833 1.04594 1.46410 0.85678 0.80080 0.77287 0.79007 1.19465 1.20825 1.20248 1.68620 1.30795 1.37233 1.02438 0.90943 0.87834 0.91165 0.82789 0.89276 0.88429 0.89812 0.94289 0.94619 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.30 71.98 0.67 -2.80 16 2 C 0.07 2.00 3.76 29.85 0.11 2.11 16 3 H 0.13 3.85 8.12 -2.39 -0.02 3.83 16 4 Cl -0.16 -4.51 28.24 -2.72 -0.08 -4.59 16 5 C 0.42 15.04 6.52 138.56 0.90 15.94 16 6 N -0.63 -23.07 9.98 -190.20 -1.90 -24.97 16 7 C 0.56 19.99 8.78 261.13 2.29 22.28 16 8 N -0.78 -27.22 14.19 -59.31 -0.84 -28.06 16 9 N -0.65 -20.71 5.35 -199.35 -1.07 -21.78 16 10 H 0.43 11.01 6.73 -92.71 -0.62 10.38 16 11 C 0.67 24.02 8.23 260.60 2.15 26.17 16 12 N -0.55 -19.07 2.90 -738.44 -2.14 -21.22 16 13 C 0.07 1.58 10.25 127.77 1.31 2.89 16 14 C 0.27 11.79 5.16 85.63 0.44 12.23 16 15 C -0.54 -26.22 9.39 25.60 0.24 -25.98 16 16 H 0.05 2.51 7.81 -2.91 -0.02 2.49 16 17 C 0.02 1.23 5.46 84.65 0.46 1.69 16 18 N -0.92 -48.97 13.29 21.44 0.28 -48.69 16 19 Si 0.95 40.32 29.54 68.60 2.03 42.35 16 20 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 21 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 23 N -0.65 -25.47 9.05 -189.40 -1.71 -27.19 16 24 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 25 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 26 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.35 11.88 8.91 -92.71 -0.83 11.06 16 28 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.10 2.30 8.07 -2.39 -0.02 2.28 16 30 H 0.08 1.55 6.42 -2.39 -0.02 1.54 16 31 H 0.04 1.75 8.07 -2.39 -0.02 1.73 16 32 H 0.04 1.77 7.35 -2.39 -0.02 1.75 16 33 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 Total: -1.00 -59.62 303.07 2.85 -56.77 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -0.29 Total: 22.84 kcal Atomic # 6 Polarization: 45.96 SS G_CDS: 8.58 Total: 54.53 kcal Atomic # 7 Polarization: -164.52 SS G_CDS: -7.38 Total: -171.90 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Atomic # 17 Polarization: -4.51 SS G_CDS: -0.08 Total: -4.59 kcal Total: -59.62 2.85 -56.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380971771.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.562 kcal (2) G-P(sol) polarization free energy of solvation -59.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds