Wall clock time and date at job start Mon Mar 30 2020 04:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47083 * 2 1 4 4 Cl 1.80307 * 109.47028 * 119.99846 * 2 1 3 5 5 C 1.50698 * 109.47145 * 239.99563 * 2 1 3 6 6 N 1.31419 * 119.33510 * 285.00350 * 5 2 1 7 7 C 1.34678 * 120.30599 * 179.97438 * 6 5 2 8 8 N 1.31263 * 120.48529 * 180.02562 * 7 6 5 9 9 N 1.38215 * 119.03614 * 359.97438 * 7 6 5 10 10 H 0.97001 * 120.62680 * 179.97438 * 9 7 6 11 11 C 1.36516 * 118.74007 * 0.27769 * 9 7 6 12 12 N 1.36541 * 120.19200 * 179.72461 * 11 9 7 13 13 C 1.46502 * 119.99431 * 359.97438 * 12 11 9 14 14 C 1.46494 * 120.00086 * 179.97438 * 12 11 9 15 15 C 1.50703 * 109.47203 * 90.00158 * 14 12 11 16 16 H 1.07997 * 120.00033 * 359.97438 * 15 14 12 17 17 C 1.37876 * 119.99771 * 179.97438 * 15 14 12 18 18 N 1.31512 * 119.99937 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99670 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47439 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47317 * 120.00019 * 19 17 15 22 22 H 1.48503 * 109.47275 * 239.99636 * 19 17 15 23 23 N 1.32347 * 119.61985 * 359.43898 * 11 9 7 24 24 H 1.08994 * 109.47083 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47120 * 300.00336 * 1 2 3 26 26 H 1.09001 * 109.46450 * 60.00159 * 1 2 3 27 27 H 0.96991 * 119.99727 * 359.97438 * 8 7 6 28 28 H 1.08997 * 109.47497 * 90.00286 * 13 12 11 29 29 H 1.09008 * 109.46774 * 210.00059 * 13 12 11 30 30 H 1.09003 * 109.47595 * 329.99752 * 13 12 11 31 31 H 1.09003 * 109.46820 * 209.99499 * 14 12 11 32 32 H 1.08999 * 109.47398 * 329.99865 * 14 12 11 33 33 H 0.97004 * 119.99658 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 17 2.1311 -0.8499 1.4722 5 6 2.0324 -0.7105 -1.2304 6 7 1.9674 -2.0218 -1.2883 7 6 2.4102 -2.6767 -2.3786 8 7 2.3465 -3.9863 -2.4404 9 7 2.9318 -1.9497 -3.4321 10 1 3.2576 -2.3978 -4.2283 11 6 2.9854 -0.5896 -3.3282 12 7 3.5000 0.1573 -4.3488 13 6 3.9972 -0.5008 -5.5595 14 6 3.5550 1.6167 -4.2330 15 6 4.8664 2.0222 -3.6110 16 1 5.5866 1.2683 -3.3297 17 6 5.1466 3.3558 -3.4012 18 7 4.2697 4.2739 -3.7443 19 14 6.7718 3.8585 -2.6296 20 1 7.5769 2.6455 -2.3367 21 1 7.5172 4.7326 -3.5706 22 1 6.5132 4.5970 -1.3675 23 7 2.5304 0.0013 -2.2348 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.9788 -4.4895 -1.6972 28 1 3.1857 -0.5954 -6.2810 29 1 4.8009 0.0946 -5.9927 30 1 4.3750 -1.4913 -5.3057 31 1 3.4693 2.0632 -5.2237 32 1 2.7331 1.9627 -3.6062 33 1 4.4670 5.2121 -3.5970 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380971772.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:06 Heat of formation + Delta-G solvation = 61.534438 kcal Electronic energy + Delta-G solvation = -18779.541888 eV Core-core repulsion = 15708.678968 eV Total energy + Delta-G solvation = -3070.862920 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.089 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.43882 -38.79588 -37.47791 -36.33358 -35.21486 -34.15178 -32.97631 -31.66952 -29.78162 -28.08806 -26.03028 -25.39767 -22.87395 -22.24292 -20.07656 -19.57657 -18.72102 -18.17567 -16.94498 -16.69770 -16.66274 -16.03167 -15.60638 -15.25004 -15.21560 -14.47275 -14.08997 -13.52580 -13.32213 -13.08508 -12.97609 -12.79227 -12.73859 -12.61353 -12.38868 -12.29910 -12.13758 -11.66103 -11.62449 -11.37820 -10.73366 -10.60063 -10.31359 -9.76093 -8.90157 -8.19686 -6.31451 -0.25272 0.87495 1.03699 1.23909 1.40130 1.45142 1.53326 2.08812 2.41145 2.75448 2.82827 3.13263 3.32510 3.91278 3.98779 4.10694 4.38498 4.48581 4.51884 4.61991 4.79457 4.82528 4.83078 5.01664 5.17583 5.24720 5.54063 5.71595 5.76057 6.03342 6.16494 6.46434 6.75720 7.15106 7.36964 7.50523 8.86755 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.015582 B = 0.006847 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.560453 B = 4088.435215 C = 5172.013389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.065 3.935 3 H 0.130 0.870 4 Cl -0.160 7.160 5 C 0.418 3.582 6 N -0.633 5.633 7 C 0.559 3.441 8 N -0.783 5.783 9 N -0.651 5.651 10 H 0.427 0.573 11 C 0.666 3.334 12 N -0.551 5.551 13 C 0.067 3.933 14 C 0.269 3.731 15 C -0.536 4.536 16 H 0.048 0.952 17 C 0.025 3.975 18 N -0.918 5.918 19 Si 0.952 3.048 20 H -0.276 1.276 21 H -0.275 1.275 22 H -0.282 1.282 23 N -0.646 5.646 24 H 0.069 0.931 25 H 0.102 0.898 26 H 0.078 0.922 27 H 0.354 0.646 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.038 0.962 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.755 -6.627 0.633 8.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.020 3.980 3 H 0.148 0.852 4 Cl -0.133 7.133 5 C 0.139 3.861 6 N -0.373 5.373 7 C 0.188 3.812 8 N -0.427 5.427 9 N -0.290 5.290 10 H 0.269 0.731 11 C 0.307 3.693 12 N -0.260 5.260 13 C -0.074 4.074 14 C 0.149 3.851 15 C -0.575 4.575 16 H 0.067 0.933 17 C -0.175 4.175 18 N -0.557 5.557 19 Si 0.778 3.222 20 H -0.200 1.200 21 H -0.200 1.200 22 H -0.208 1.208 23 N -0.391 5.391 24 H 0.088 0.912 25 H 0.121 0.879 26 H 0.097 0.903 27 H 0.172 0.828 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.691 -6.898 0.537 8.359 hybrid contribution 1.079 0.073 0.305 1.123 sum -3.613 -6.825 0.842 7.768 Atomic orbital electron populations 1.22021 0.88399 1.04179 1.04887 1.22729 0.98800 0.96522 0.79994 0.85243 1.98718 1.90425 1.82129 1.42055 1.22955 0.83661 0.87537 0.91936 1.70102 1.32627 1.09793 1.24808 1.20157 0.88373 0.91321 0.81380 1.69719 1.34937 1.00829 1.37167 1.43145 1.59671 1.04929 1.21261 0.73068 1.19153 0.83827 0.78383 0.87909 1.47001 1.56477 1.08743 1.13797 1.22245 1.01689 0.98517 0.84954 1.19202 0.97275 0.70994 0.97652 1.21520 1.02458 0.92069 1.41423 0.93345 1.25504 0.99845 0.96423 0.95756 1.69992 1.36202 1.01324 1.48173 0.85600 0.80094 0.78102 0.78372 1.20028 1.20046 1.20771 1.68631 1.30663 1.37266 1.02515 0.91163 0.87937 0.90293 0.82797 0.89085 0.88486 0.89938 0.94121 0.94418 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.30 71.98 0.67 -2.48 16 2 C 0.07 1.94 3.76 29.85 0.11 2.05 16 3 H 0.13 3.86 8.12 -2.39 -0.02 3.84 16 4 Cl -0.16 -4.78 28.24 -2.72 -0.08 -4.85 16 5 C 0.42 15.01 6.52 138.56 0.90 15.91 16 6 N -0.63 -23.05 9.98 -190.19 -1.90 -24.95 16 7 C 0.56 19.99 8.78 261.13 2.29 22.28 16 8 N -0.78 -27.24 14.19 -59.30 -0.84 -28.08 16 9 N -0.65 -20.73 5.35 -199.35 -1.07 -21.80 16 10 H 0.43 11.03 6.73 -92.71 -0.62 10.40 16 11 C 0.67 24.00 8.23 260.60 2.15 26.15 16 12 N -0.55 -19.06 2.90 -738.44 -2.14 -21.21 16 13 C 0.07 1.57 10.25 127.77 1.31 2.88 16 14 C 0.27 11.76 5.16 85.64 0.44 12.21 16 15 C -0.54 -26.52 9.39 25.60 0.24 -26.28 16 16 H 0.05 2.46 7.81 -2.91 -0.02 2.43 16 17 C 0.03 1.28 5.46 84.65 0.46 1.75 16 18 N -0.92 -48.94 13.29 21.45 0.28 -48.65 16 19 Si 0.95 41.15 29.54 68.60 2.03 43.18 16 20 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 23 N -0.65 -25.41 9.05 -189.40 -1.71 -27.13 16 24 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.35 11.89 8.91 -92.71 -0.83 11.06 16 28 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.10 2.30 8.07 -2.38 -0.02 2.28 16 30 H 0.08 1.55 6.43 -2.39 -0.02 1.53 16 31 H 0.04 1.81 8.07 -2.39 -0.02 1.79 16 32 H 0.04 1.85 7.35 -2.39 -0.02 1.83 16 33 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 Total: -1.00 -60.44 303.07 2.85 -57.59 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -0.29 Total: 21.43 kcal Atomic # 6 Polarization: 45.89 SS G_CDS: 8.58 Total: 54.47 kcal Atomic # 7 Polarization: -164.43 SS G_CDS: -7.38 Total: -171.81 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 17 Polarization: -4.78 SS G_CDS: -0.08 Total: -4.85 kcal Total: -60.44 2.85 -57.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380971772.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.121 kcal (2) G-P(sol) polarization free energy of solvation -60.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds