Wall clock time and date at job start Mon Mar 30 2020 04:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46965 * 2 1 4 4 Cl 1.80298 * 109.47425 * 239.99632 * 2 1 3 5 5 C 1.50704 * 109.46966 * 119.99513 * 2 1 3 6 6 N 1.30273 * 119.38671 * 304.98188 * 5 2 1 7 7 C 1.35654 * 121.26383 * 180.02562 * 6 5 2 8 8 N 1.30746 * 120.01065 * 180.02562 * 7 6 5 9 9 N 1.38375 * 119.97664 * 359.74390 * 7 6 5 10 10 H 0.96995 * 120.58623 * 180.25837 * 9 7 6 11 11 C 1.38074 * 118.82479 * 0.50498 * 9 7 6 12 12 N 1.30226 * 120.60606 * 179.78002 * 11 9 7 13 13 C 1.46505 * 119.99594 * 353.99652 * 12 11 9 14 14 C 1.53003 * 109.47046 * 116.07115 * 13 12 11 15 15 C 1.50705 * 109.46713 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00050 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99470 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00536 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99759 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47277 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47104 * 119.99817 * 19 17 15 22 22 H 1.48496 * 109.47179 * 239.99841 * 19 17 15 23 23 N 1.36221 * 119.38618 * 125.00285 * 5 2 1 24 24 H 0.96999 * 120.04081 * 359.96093 * 23 5 2 25 25 H 1.09000 * 109.47148 * 300.00081 * 1 2 3 26 26 H 1.09004 * 109.46622 * 60.00327 * 1 2 3 27 27 H 1.08999 * 109.46965 * 179.97438 * 1 2 3 28 28 H 0.96993 * 120.00024 * 0.02562 * 8 7 6 29 29 H 1.08993 * 109.46824 * 356.06573 * 13 12 11 30 30 H 1.08999 * 109.46471 * 236.06707 * 13 12 11 31 31 H 1.08992 * 109.47267 * 59.99815 * 14 13 12 32 32 H 1.08998 * 109.46671 * 299.99390 * 14 13 12 33 33 H 0.97002 * 120.00100 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 17 2.1311 -0.8500 -1.4720 5 6 2.0323 -0.7103 1.2306 6 7 1.6318 -0.3146 2.4053 7 6 2.0601 -0.9260 3.5380 8 7 1.6419 -0.5089 4.7045 9 7 2.9351 -1.9950 3.4581 10 1 3.2440 -2.4411 4.2621 11 6 3.3646 -2.4122 2.2140 12 7 4.1913 -3.4118 2.0987 13 6 4.7766 -4.0200 3.2962 14 6 4.3052 -5.4709 3.4135 15 6 4.9077 -6.0967 4.6450 16 1 5.5618 -5.5177 5.2800 17 6 4.6239 -7.4084 4.9607 18 7 3.8271 -8.1134 4.1877 19 14 5.3714 -8.1844 6.4867 20 1 6.2260 -7.1880 7.1808 21 1 4.2864 -8.6275 7.3988 22 1 6.1962 -9.3549 6.0935 23 7 2.8970 -1.7540 1.0938 24 1 3.1838 -2.0344 0.2106 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.0251 0.2375 4.7600 29 1 4.4607 -3.4628 4.1780 30 1 5.8637 -3.9962 3.2213 31 1 4.6210 -6.0280 2.5316 32 1 3.2180 -5.4947 3.4883 33 1 3.6271 -9.0362 4.4101 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381633670.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:08 Heat of formation + Delta-G solvation = 49.952154 kcal Electronic energy + Delta-G solvation = -18118.902234 eV Core-core repulsion = 15047.537069 eV Total energy + Delta-G solvation = -3071.365165 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.46256 -38.48422 -37.68654 -36.82685 -35.62769 -34.11375 -33.06399 -32.31919 -31.14076 -27.43595 -26.13741 -23.87768 -23.26561 -21.90968 -20.79553 -20.27521 -18.70661 -17.90613 -17.68850 -17.12876 -16.54725 -16.30585 -15.88881 -15.65029 -15.13249 -14.62395 -14.30582 -13.94385 -13.48581 -13.24698 -13.00782 -12.87360 -12.65896 -12.49765 -12.32783 -12.17784 -11.81096 -11.75692 -11.65011 -11.40970 -10.92428 -10.74216 -10.57050 -9.69319 -9.48694 -8.24540 -6.37782 -0.20845 0.67187 0.89862 1.04724 1.39652 1.39953 1.53641 1.63822 2.35319 2.38979 2.44823 3.09112 3.52789 3.67221 3.69494 3.97032 4.18408 4.20324 4.60201 4.74295 4.80834 4.82123 4.91555 5.24172 5.24754 5.38159 5.49812 5.57709 5.67456 5.80180 6.13455 6.59842 6.76982 6.84539 7.25757 7.32703 8.87743 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.026851 B = 0.004030 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.535469 B = 6946.615637 C = 7585.802308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 H 0.180 0.820 4 Cl -0.150 7.150 5 C 0.444 3.556 6 N -0.577 5.577 7 C 0.555 3.445 8 N -0.751 5.751 9 N -0.687 5.687 10 H 0.429 0.571 11 C 0.576 3.424 12 N -0.603 5.603 13 C 0.087 3.913 14 C 0.040 3.960 15 C -0.545 4.545 16 H 0.067 0.933 17 C 0.002 3.998 18 N -0.933 5.933 19 Si 0.970 3.030 20 H -0.259 1.259 21 H -0.279 1.279 22 H -0.277 1.277 23 N -0.627 5.627 24 H 0.441 0.559 25 H 0.095 0.905 26 H 0.111 0.889 27 H 0.062 0.938 28 H 0.363 0.637 29 H 0.037 0.963 30 H 0.082 0.918 31 H -0.005 1.005 32 H -0.018 1.018 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.291 20.599 -11.645 24.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.005 3.995 3 H 0.198 0.802 4 Cl -0.123 7.123 5 C 0.167 3.833 6 N -0.313 5.313 7 C 0.183 3.817 8 N -0.388 5.388 9 N -0.336 5.336 10 H 0.272 0.728 11 C 0.209 3.791 12 N -0.336 5.336 13 C -0.042 4.042 14 C 0.002 3.998 15 C -0.584 4.584 16 H 0.085 0.915 17 C -0.197 4.197 18 N -0.572 5.572 19 Si 0.794 3.206 20 H -0.182 1.182 21 H -0.205 1.205 22 H -0.202 1.202 23 N -0.267 5.267 24 H 0.287 0.713 25 H 0.114 0.886 26 H 0.129 0.871 27 H 0.081 0.919 28 H 0.182 0.818 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.014 0.986 32 H 0.000 1.000 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.229 20.136 -10.984 23.768 hybrid contribution 0.405 -1.109 0.739 1.393 sum -5.823 19.028 -10.245 22.381 Atomic orbital electron populations 1.22159 0.87441 1.04530 1.06273 1.23431 0.99895 0.98443 0.77734 0.80240 1.98784 1.90030 1.81444 1.42072 1.23557 0.81608 0.82154 0.96010 1.69825 1.32360 1.33157 0.95935 1.20150 0.87236 0.85160 0.89182 1.69676 1.24331 1.24624 1.20165 1.43750 1.47464 1.33870 1.08524 0.72760 1.19223 0.91292 0.89373 0.79198 1.72309 1.17991 1.10796 1.32519 1.21792 0.99016 0.95329 0.88094 1.18899 0.94254 0.90786 0.95815 1.21618 1.29456 0.97617 1.09666 0.91451 1.26008 0.95404 0.97871 1.00373 1.70127 1.37397 1.09769 1.39955 0.85320 0.78302 0.78428 0.78519 1.18249 1.20450 1.20209 1.42665 1.44333 1.30656 1.09027 0.71293 0.88624 0.87051 0.91925 0.81815 0.94499 0.89981 0.98615 0.99996 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.17 71.98 0.66 -0.44 16 2 C 0.05 0.49 3.81 29.85 0.11 0.60 16 3 H 0.18 0.65 8.14 -2.39 -0.02 0.63 16 4 Cl -0.15 -1.82 26.58 -2.72 -0.07 -1.89 16 5 C 0.44 8.57 7.10 137.82 0.98 9.55 16 6 N -0.58 -13.67 9.94 -187.98 -1.87 -15.54 16 7 C 0.56 17.04 8.76 260.81 2.28 19.33 16 8 N -0.75 -23.67 14.16 -58.88 -0.83 -24.50 16 9 N -0.69 -23.01 5.40 -197.89 -1.07 -24.08 16 10 H 0.43 15.45 6.35 -92.71 -0.59 14.86 16 11 C 0.58 19.05 8.54 259.99 2.22 21.27 16 12 N -0.60 -23.69 10.62 -348.39 -3.70 -27.40 16 13 C 0.09 3.83 6.23 86.38 0.54 4.37 16 14 C 0.04 2.22 5.30 29.85 0.16 2.38 16 15 C -0.55 -31.46 9.11 25.60 0.23 -31.22 16 16 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 17 C 0.00 0.09 5.46 84.65 0.46 0.55 16 18 N -0.93 -57.93 13.29 21.45 0.28 -57.65 16 19 Si 0.97 44.73 29.54 68.60 2.03 46.75 16 20 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 N -0.63 -15.14 5.31 -186.90 -0.99 -16.13 16 24 H 0.44 9.44 6.67 -92.71 -0.62 8.83 16 25 H 0.10 0.78 7.94 -2.39 -0.02 0.76 16 26 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 28 H 0.36 9.88 8.90 -92.71 -0.83 9.05 16 29 H 0.04 1.52 5.50 -2.39 -0.01 1.51 16 30 H 0.08 3.49 8.14 -2.39 -0.02 3.48 16 31 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 33 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -71.90 299.89 0.57 -71.33 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -0.85 Total: 22.71 kcal Atomic # 6 Polarization: 18.74 SS G_CDS: 7.65 Total: 26.39 kcal Atomic # 7 Polarization: -157.12 SS G_CDS: -8.18 Total: -165.30 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.07 Total: -1.89 kcal Total: -71.90 0.57 -71.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381633670.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.285 kcal (2) G-P(sol) polarization free energy of solvation -71.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds