Wall clock time and date at job start Mon Mar 30 2020 04:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47608 * 2 1 4 4 Cl 1.80304 * 109.46886 * 119.99891 * 2 1 3 5 5 C 1.50702 * 109.46928 * 239.99607 * 2 1 3 6 6 N 1.30273 * 119.38695 * 305.02524 * 5 2 1 7 7 C 1.35654 * 121.26383 * 179.97438 * 6 5 2 8 8 N 1.30746 * 120.01065 * 180.02562 * 7 6 5 9 9 N 1.38375 * 119.97664 * 359.74390 * 7 6 5 10 10 H 0.96995 * 120.58623 * 180.25837 * 9 7 6 11 11 C 1.38074 * 118.82479 * 0.50498 * 9 7 6 12 12 N 1.30226 * 120.60606 * 179.78002 * 11 9 7 13 13 C 1.46502 * 119.99679 * 353.95467 * 12 11 9 14 14 C 1.52988 * 109.47574 * 116.10702 * 13 12 11 15 15 C 1.50699 * 109.47463 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99788 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00326 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99781 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00276 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47095 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47192 * 120.00230 * 19 17 15 22 22 H 1.48499 * 109.47063 * 240.00145 * 19 17 15 23 23 N 1.36221 * 119.38594 * 125.00340 * 5 2 1 24 24 H 0.96998 * 120.04347 * 0.04422 * 23 5 2 25 25 H 1.08994 * 109.47574 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46783 * 300.00473 * 1 2 3 27 27 H 1.08998 * 109.47040 * 59.99541 * 1 2 3 28 28 H 0.96993 * 120.00024 * 0.02562 * 8 7 6 29 29 H 1.09003 * 109.46987 * 356.10022 * 13 12 11 30 30 H 1.09006 * 109.46608 * 236.10458 * 13 12 11 31 31 H 1.09003 * 109.47518 * 59.99646 * 14 13 12 32 32 H 1.09001 * 109.47156 * 299.99995 * 14 13 12 33 33 H 0.96996 * 119.99811 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 17 2.1310 -0.8499 1.4722 5 6 2.0323 -0.7105 -1.2304 6 7 1.6311 -1.9254 -1.4756 7 6 2.0586 -2.6002 -2.5720 8 7 1.6398 -3.8187 -2.7945 9 7 2.9334 -1.9965 -3.4579 10 1 3.2418 -2.4694 -4.2466 11 6 3.3637 -0.7107 -3.1966 12 7 4.1903 -0.1111 -4.0048 13 6 4.7753 -0.8438 -5.1304 14 6 4.3046 -0.2195 -6.4454 15 6 4.9069 -0.9729 -7.6032 16 1 5.5599 -1.8133 -7.4195 17 6 4.6236 -0.5900 -8.8971 18 7 3.8280 0.4331 -9.1208 19 14 5.3697 -1.5243 -10.3323 20 1 6.2220 -2.6255 -9.8165 21 1 4.2840 -2.0910 -11.1720 22 1 6.1958 -0.5994 -11.1492 23 7 2.8970 -0.0702 -2.0659 24 1 3.1848 0.8344 -1.8665 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8899 28 1 1.0231 -4.2401 -2.1757 29 1 4.4590 -1.8861 -5.0892 30 1 5.8626 -0.7915 -5.0721 31 1 4.6209 0.8228 -6.4866 32 1 3.2174 -0.2717 -6.5037 33 1 3.6290 0.7027 -10.0311 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381633672.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:11 Heat of formation + Delta-G solvation = 48.210079 kcal Electronic energy + Delta-G solvation = -18056.321365 eV Core-core repulsion = 14984.880657 eV Total energy + Delta-G solvation = -3071.440708 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.089 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.42546 -38.40280 -37.52839 -36.88648 -35.57315 -33.99130 -32.99908 -32.40687 -31.12034 -27.41503 -26.10398 -23.86333 -23.25561 -21.86067 -20.78372 -20.24677 -18.69870 -17.88584 -17.49140 -17.07424 -16.53786 -16.28279 -15.81414 -15.72064 -15.12396 -14.67316 -14.31461 -13.91787 -13.44566 -13.15499 -12.99476 -12.84672 -12.65054 -12.47757 -12.29811 -11.88120 -11.80921 -11.73914 -11.53333 -11.40092 -10.91253 -10.73443 -10.56142 -9.68244 -9.45626 -8.24339 -6.37084 -0.32429 0.87346 0.93376 1.29290 1.39705 1.40069 1.53545 1.66388 2.38243 2.41902 2.45483 3.09359 3.47702 3.65372 3.73479 3.99240 4.20240 4.22288 4.61974 4.73644 4.81417 4.85155 4.93397 5.26934 5.29237 5.39472 5.53343 5.62819 5.70045 5.83389 6.14749 6.64308 6.78143 6.86725 7.25994 7.33217 8.87780 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.036225 B = 0.003635 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.756106 B = 7700.089555 C = 7962.720406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 H 0.171 0.829 4 Cl -0.144 7.144 5 C 0.441 3.559 6 N -0.572 5.572 7 C 0.554 3.446 8 N -0.753 5.753 9 N -0.688 5.688 10 H 0.428 0.572 11 C 0.577 3.423 12 N -0.600 5.600 13 C 0.087 3.913 14 C 0.041 3.959 15 C -0.545 4.545 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.931 5.931 19 Si 0.969 3.031 20 H -0.260 1.260 21 H -0.279 1.279 22 H -0.276 1.276 23 N -0.619 5.619 24 H 0.450 0.550 25 H 0.069 0.931 26 H 0.108 0.892 27 H 0.086 0.914 28 H 0.361 0.639 29 H 0.034 0.966 30 H 0.081 0.919 31 H -0.003 1.003 32 H -0.018 1.018 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.160 1.688 22.634 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.003 3.997 3 H 0.189 0.811 4 Cl -0.117 7.117 5 C 0.164 3.836 6 N -0.307 5.307 7 C 0.181 3.819 8 N -0.390 5.390 9 N -0.337 5.337 10 H 0.271 0.729 11 C 0.211 3.789 12 N -0.333 5.333 13 C -0.043 4.043 14 C 0.003 3.997 15 C -0.584 4.584 16 H 0.084 0.916 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.793 3.207 20 H -0.184 1.184 21 H -0.205 1.205 22 H -0.202 1.202 23 N -0.257 5.257 24 H 0.294 0.706 25 H 0.088 0.912 26 H 0.126 0.874 27 H 0.104 0.896 28 H 0.180 0.820 29 H 0.052 0.948 30 H 0.099 0.901 31 H 0.016 0.984 32 H 0.001 0.999 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.110 1.134 22.020 22.880 hybrid contribution 0.398 -0.466 -1.185 1.334 sum -5.712 0.668 20.835 21.614 Atomic orbital electron populations 1.22142 0.88038 1.04958 1.05526 1.23276 0.99735 0.97597 0.79077 0.81142 1.98792 1.90031 1.82001 1.40923 1.23565 0.81908 0.88518 0.89634 1.69914 1.31998 1.08435 1.20367 1.20186 0.87227 0.90651 0.83796 1.69655 1.24250 1.07317 1.37747 1.43777 1.47402 1.14379 1.28149 0.72881 1.19227 0.91200 0.79978 0.88503 1.72296 1.17939 1.32927 1.10153 1.21773 0.98974 0.94341 0.89178 1.18889 0.94263 0.95509 0.91026 1.21624 1.29478 1.15443 0.91841 0.91613 1.25987 0.95426 0.95972 1.02235 1.70118 1.37413 1.28055 1.21544 0.85343 0.78307 0.78672 0.78396 1.18373 1.20498 1.20166 1.42263 1.44141 1.20005 1.19275 0.70608 0.91157 0.87374 0.89569 0.82018 0.94760 0.90112 0.98447 0.99924 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.17 71.98 0.66 -0.48 16 2 C 0.05 0.46 3.75 29.85 0.11 0.57 16 3 H 0.17 0.20 7.90 -2.39 -0.02 0.18 16 4 Cl -0.14 -1.99 28.59 -2.72 -0.08 -2.07 16 5 C 0.44 8.09 6.56 137.82 0.90 9.00 16 6 N -0.57 -14.17 9.93 -187.98 -1.87 -16.04 16 7 C 0.55 17.30 8.76 260.81 2.28 19.59 16 8 N -0.75 -24.65 14.16 -58.88 -0.83 -25.49 16 9 N -0.69 -22.68 5.40 -197.89 -1.07 -23.75 16 10 H 0.43 15.33 6.35 -92.71 -0.59 14.74 16 11 C 0.58 17.84 8.54 259.99 2.22 20.06 16 12 N -0.60 -22.19 10.62 -348.40 -3.70 -25.89 16 13 C 0.09 3.72 6.23 86.37 0.54 4.26 16 14 C 0.04 2.22 5.30 29.84 0.16 2.37 16 15 C -0.55 -31.16 9.11 25.60 0.23 -30.93 16 16 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 17 C 0.00 0.12 5.46 84.65 0.46 0.58 16 18 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 19 Si 0.97 44.44 29.54 68.60 2.03 46.47 16 20 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 N -0.62 -12.50 5.42 -186.90 -1.01 -13.51 16 24 H 0.45 5.96 8.65 -92.71 -0.80 5.16 16 25 H 0.07 0.84 7.93 -2.39 -0.02 0.82 16 26 H 0.11 0.35 8.14 -2.39 -0.02 0.34 16 27 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.36 10.53 8.90 -92.71 -0.83 9.70 16 29 H 0.03 1.40 5.51 -2.39 -0.01 1.38 16 30 H 0.08 3.37 8.14 -2.38 -0.02 3.35 16 31 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 33 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -73.55 303.14 0.29 -73.26 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -1.04 Total: 18.88 kcal Atomic # 6 Polarization: 17.45 SS G_CDS: 7.57 Total: 25.02 kcal Atomic # 7 Polarization: -153.36 SS G_CDS: -8.20 Total: -161.56 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -0.08 Total: -2.07 kcal Total: -73.55 0.29 -73.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381633672.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.475 kcal (2) G-P(sol) polarization free energy of solvation -73.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds