Wall clock time and date at job start Mon Mar 30 2020 05:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86804 * 120.00237 * 2 1 4 4 H 1.48497 * 109.47499 * 274.51591 * 3 2 1 5 5 H 1.48498 * 109.46920 * 34.51915 * 3 2 1 6 6 H 1.48503 * 109.46747 * 154.51501 * 3 2 1 7 7 C 1.39900 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99997 * 197.96732 * 7 2 1 9 9 C 1.41214 * 119.99897 * 17.95935 * 7 2 1 10 10 C 1.40839 * 120.17523 * 25.16786 * 9 7 2 11 11 C 1.36436 * 119.80658 * 180.22651 * 10 9 7 12 12 C 1.39314 * 120.18679 * 359.49986 * 11 10 9 13 13 O 1.35675 * 119.81564 * 180.27303 * 12 11 10 14 14 C 1.42911 * 116.99567 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.46845 * 180.02562 * 14 13 12 16 16 C 1.40069 * 119.87610 * 359.97438 * 15 14 13 17 17 C 1.35714 * 119.52306 * 179.97438 * 16 15 14 18 18 N 1.36224 * 119.25643 * 359.97438 * 17 16 15 19 19 H 0.96997 * 120.13205 * 180.02562 * 18 17 16 20 20 C 1.37493 * 119.73284 * 0.02562 * 18 17 16 21 21 N 1.31438 * 119.76564 * 180.02562 * 20 18 17 22 22 N 1.31391 * 119.87463 * 179.72431 * 15 14 13 23 23 C 1.39309 * 120.36327 * 0.25973 * 12 11 10 24 24 C 1.36433 * 120.18865 * 359.97438 * 23 12 11 25 25 H 0.97003 * 119.99637 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.09828 * 0.02562 * 10 9 7 27 27 H 1.08005 * 119.90941 * 179.77759 * 11 10 9 28 28 H 1.08998 * 109.46572 * 299.99899 * 14 13 12 29 29 H 1.08997 * 109.46840 * 60.00516 * 14 13 12 30 30 H 1.08002 * 120.23488 * 0.02562 * 16 15 14 31 31 H 1.07999 * 120.37063 * 180.02562 * 17 16 15 32 32 H 0.97003 * 119.99852 * 180.02562 * 21 20 18 33 33 H 1.08003 * 119.90956 * 180.02562 * 23 12 11 34 34 H 1.08001 * 120.10139 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3949 2.1016 -1.3957 5 1 1.4913 2.6232 0.7934 6 1 3.5849 1.4143 0.6024 7 6 2.0083 -1.2116 -0.0005 8 1 3.0487 -1.2345 0.2880 9 6 1.3538 -2.4045 -0.3782 10 6 0.2329 -2.3580 -1.2296 11 6 -0.3966 -3.5149 -1.5860 12 6 0.0728 -4.7404 -1.1185 13 8 -0.5555 -5.8866 -1.4820 14 6 -0.0238 -7.1092 -0.9673 15 6 -0.8444 -8.2668 -1.4749 16 6 -1.9376 -8.0305 -2.3181 17 6 -2.6713 -9.0784 -2.7714 18 7 -2.3287 -10.3425 -2.3969 19 1 -2.8441 -11.1007 -2.7138 20 6 -1.2496 -10.5393 -1.5681 21 7 -0.9181 -11.7588 -1.2067 22 7 -0.5286 -9.4944 -1.1289 23 6 1.1839 -4.7955 -0.2800 24 6 1.8220 -3.6476 0.0897 25 1 -0.4850 0.8401 0.0004 26 1 -0.1294 -1.4092 -1.5968 27 1 -1.2585 -3.4809 -2.2359 28 1 1.0086 -7.2238 -1.2974 29 1 -0.0572 -7.0898 0.1219 30 1 -2.1943 -7.0217 -2.6060 31 1 -3.5168 -8.9119 -3.4225 32 1 -0.1576 -11.9016 -0.6217 33 1 1.5419 -5.7496 0.0778 34 1 2.6835 -3.6920 0.7395 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385051863.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:22 Heat of formation + Delta-G solvation = 51.318855 kcal Electronic energy + Delta-G solvation = -19014.896851 eV Core-core repulsion = 15913.731048 eV Total energy + Delta-G solvation = -3101.165802 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.00163 -38.90255 -36.64042 -34.88262 -34.34061 -33.32061 -30.03999 -29.68633 -29.12117 -28.03162 -24.79563 -23.77729 -22.59782 -20.85030 -20.59194 -18.73342 -18.22088 -17.41522 -16.72008 -16.38818 -15.75082 -15.37719 -15.03459 -14.75126 -14.26828 -13.98959 -13.63567 -13.02751 -12.64262 -12.26843 -12.18992 -12.03926 -11.58371 -11.33448 -11.16042 -10.96376 -10.79597 -10.51642 -10.13786 -9.97434 -9.85715 -9.70190 -9.38829 -9.07983 -7.83620 -7.69443 -7.09716 -6.77082 -4.30324 0.55357 1.66124 2.54421 2.72979 2.90884 3.06928 3.10574 3.17372 3.43056 3.60563 3.92564 4.25693 4.56677 4.59654 4.80956 5.21235 5.38407 5.47998 5.51381 5.63398 5.76250 5.90898 6.03909 6.16687 6.35924 6.64216 6.91298 6.93503 7.06205 7.13653 7.38475 7.50297 7.72921 7.77465 7.96113 8.15002 8.31896 8.35192 8.59129 8.85713 8.93002 10.17769 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.058441 B = 0.003147 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.002817 B = 8895.984225 C = 9291.277396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.090 3.910 10 C -0.135 4.135 11 C -0.115 4.115 12 C -0.012 4.012 13 O -0.323 6.323 14 C 0.107 3.893 15 C 0.281 3.719 16 C -0.275 4.275 17 C 0.182 3.818 18 N -0.617 5.617 19 H 0.422 0.578 20 C 0.542 3.458 21 N -0.779 5.779 22 N -0.561 5.561 23 C -0.165 4.165 24 C -0.197 4.197 25 H 0.280 0.720 26 H 0.125 0.875 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.166 0.834 31 H 0.178 0.822 32 H 0.354 0.646 33 H 0.096 0.904 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.740 -10.294 -5.572 13.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.088 3.912 10 C -0.154 4.154 11 C -0.134 4.134 12 C -0.055 4.055 13 O -0.238 6.238 14 C 0.030 3.970 15 C 0.112 3.888 16 C -0.304 4.304 17 C 0.045 3.955 18 N -0.237 5.237 19 H 0.260 0.740 20 C 0.172 3.828 21 N -0.419 5.419 22 N -0.286 5.286 23 C -0.183 4.183 24 C -0.217 4.217 25 H 0.091 0.909 26 H 0.143 0.857 27 H 0.116 0.884 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.183 0.817 31 H 0.195 0.805 32 H 0.172 0.828 33 H 0.114 0.886 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.777 -11.536 -5.305 13.950 hybrid contribution 0.303 1.196 0.072 1.235 sum -5.475 -10.340 -5.233 12.817 Atomic orbital electron populations 1.69833 1.07506 1.29179 1.35798 1.25882 0.94725 1.01249 0.92320 0.86311 0.80587 0.80761 0.79128 1.19364 1.20351 1.18641 1.19502 0.98173 0.91244 1.40363 0.90464 1.17613 0.91766 0.92127 0.89689 1.20952 0.98646 0.96279 0.99564 1.19792 1.00761 0.90057 1.02763 1.18486 0.97364 0.84136 1.05519 1.85721 1.55316 1.12039 1.70766 1.21041 0.95865 0.81267 0.98830 1.21730 0.89298 0.92147 0.85631 1.21344 1.00619 1.01157 1.07319 1.22402 0.96864 0.82811 0.93384 1.42332 1.28502 1.08739 1.44116 0.74008 1.20046 0.84426 0.90400 0.87902 1.69903 1.28447 1.15003 1.28525 1.69585 1.31002 0.98829 1.29194 1.20439 0.97804 0.97983 1.02121 1.20582 1.03253 0.92476 1.05401 0.90890 0.85748 0.88365 0.89653 0.89633 0.81666 0.80526 0.82833 0.88591 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.04 11.00 55.55 0.61 -19.43 16 2 C 0.08 1.84 5.13 -17.34 -0.09 1.75 16 3 Si 0.91 18.24 29.60 -169.99 -5.03 13.21 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.46 -11.95 9.04 -37.83 -0.34 -12.29 16 8 H 0.08 1.93 7.91 -52.49 -0.42 1.51 16 9 C 0.09 2.33 5.57 -106.80 -0.59 1.73 16 10 C -0.14 -3.36 8.64 -39.25 -0.34 -3.70 16 11 C -0.11 -2.58 9.92 -39.83 -0.40 -2.97 16 12 C -0.01 -0.26 6.71 -38.78 -0.26 -0.52 16 13 O -0.32 -5.77 8.62 -18.73 -0.16 -5.93 16 14 C 0.11 1.61 5.28 36.00 0.19 1.80 16 15 C 0.28 3.89 6.83 -82.10 -0.56 3.32 16 16 C -0.28 -3.03 9.35 -39.80 -0.37 -3.40 16 17 C 0.18 1.40 11.30 -16.50 -0.19 1.21 16 18 N -0.62 -5.79 5.42 -13.78 -0.07 -5.86 16 19 H 0.42 2.84 8.93 -40.82 -0.36 2.47 16 20 C 0.54 7.43 8.69 -323.05 -2.81 4.63 16 21 N -0.78 -11.30 14.19 29.72 0.42 -10.88 16 22 N -0.56 -8.31 10.39 -10.02 -0.10 -8.42 16 23 C -0.16 -3.52 8.96 -39.83 -0.36 -3.88 16 24 C -0.20 -4.67 9.74 -39.25 -0.38 -5.05 16 25 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 26 H 0.12 3.17 6.21 -52.49 -0.33 2.85 16 27 H 0.10 1.98 8.06 -52.48 -0.42 1.56 16 28 H 0.09 1.26 7.64 -51.93 -0.40 0.87 16 29 H 0.09 1.29 7.65 -51.93 -0.40 0.89 16 30 H 0.17 1.79 7.05 -52.49 -0.37 1.42 16 31 H 0.18 0.48 8.06 -52.49 -0.42 0.06 16 32 H 0.35 5.08 8.90 -40.82 -0.36 4.72 16 33 H 0.10 1.77 6.27 -52.48 -0.33 1.45 16 34 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 298.73 15.07 4.50 4.50 Total: -1.00 -29.76 298.73 -9.70 -39.46 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -3.36 Total: 10.71 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -6.50 Total: -17.37 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.85 Total: -44.59 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.16 Total: -5.93 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.76 -9.70 -39.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385051863.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.778 kcal (2) G-P(sol) polarization free energy of solvation -29.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds