Wall clock time and date at job start Mon Mar 30 2020 05:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86804 * 120.00237 * 2 1 4 4 H 1.48497 * 109.47499 * 274.51591 * 3 2 1 5 5 H 1.48498 * 109.46920 * 34.51915 * 3 2 1 6 6 H 1.48503 * 109.46747 * 154.51501 * 3 2 1 7 7 C 1.39900 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99997 * 197.96732 * 7 2 1 9 9 C 1.41214 * 119.99897 * 17.95935 * 7 2 1 10 10 C 1.40839 * 120.17523 * 25.16786 * 9 7 2 11 11 C 1.36436 * 119.80658 * 180.22651 * 10 9 7 12 12 C 1.39314 * 120.18679 * 359.49986 * 11 10 9 13 13 O 1.35675 * 119.81564 * 180.27303 * 12 11 10 14 14 C 1.42911 * 116.99567 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.46845 * 180.02562 * 14 13 12 16 16 C 1.40069 * 119.87610 * 359.97438 * 15 14 13 17 17 C 1.35714 * 119.52306 * 179.97438 * 16 15 14 18 18 N 1.36224 * 119.25643 * 359.97438 * 17 16 15 19 19 H 0.96997 * 120.13205 * 180.02562 * 18 17 16 20 20 C 1.37493 * 119.73284 * 0.02562 * 18 17 16 21 21 N 1.31438 * 119.76564 * 180.02562 * 20 18 17 22 22 N 1.31391 * 119.87463 * 179.72431 * 15 14 13 23 23 C 1.39309 * 120.36327 * 0.25973 * 12 11 10 24 24 C 1.36433 * 120.18865 * 359.97438 * 23 12 11 25 25 H 0.97003 * 119.99637 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.09828 * 0.02562 * 10 9 7 27 27 H 1.08005 * 119.90941 * 179.77759 * 11 10 9 28 28 H 1.08998 * 109.46572 * 299.99899 * 14 13 12 29 29 H 1.08997 * 109.46840 * 60.00516 * 14 13 12 30 30 H 1.08002 * 120.23488 * 0.02562 * 16 15 14 31 31 H 1.07999 * 120.37063 * 180.02562 * 17 16 15 32 32 H 0.97003 * 119.99852 * 180.02562 * 21 20 18 33 33 H 1.08003 * 119.90956 * 180.02562 * 23 12 11 34 34 H 1.08001 * 120.10139 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3949 2.1016 -1.3957 5 1 1.4913 2.6232 0.7934 6 1 3.5849 1.4143 0.6024 7 6 2.0083 -1.2116 -0.0005 8 1 3.0487 -1.2345 0.2880 9 6 1.3538 -2.4045 -0.3782 10 6 0.2329 -2.3580 -1.2296 11 6 -0.3966 -3.5149 -1.5860 12 6 0.0728 -4.7404 -1.1185 13 8 -0.5555 -5.8866 -1.4820 14 6 -0.0238 -7.1092 -0.9673 15 6 -0.8444 -8.2668 -1.4749 16 6 -1.9376 -8.0305 -2.3181 17 6 -2.6713 -9.0784 -2.7714 18 7 -2.3287 -10.3425 -2.3969 19 1 -2.8441 -11.1007 -2.7138 20 6 -1.2496 -10.5393 -1.5681 21 7 -0.9181 -11.7588 -1.2067 22 7 -0.5286 -9.4944 -1.1289 23 6 1.1839 -4.7955 -0.2800 24 6 1.8220 -3.6476 0.0897 25 1 -0.4850 0.8401 0.0004 26 1 -0.1294 -1.4092 -1.5968 27 1 -1.2585 -3.4809 -2.2359 28 1 1.0086 -7.2238 -1.2974 29 1 -0.0572 -7.0898 0.1219 30 1 -2.1943 -7.0217 -2.6060 31 1 -3.5168 -8.9119 -3.4225 32 1 -0.1576 -11.9016 -0.6217 33 1 1.5419 -5.7496 0.0778 34 1 2.6835 -3.6920 0.7395 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385051863.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:22 Heat of formation + Delta-G solvation = 34.334850 kcal Electronic energy + Delta-G solvation = -19015.633332 eV Core-core repulsion = 15913.731048 eV Total energy + Delta-G solvation = -3101.902284 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.93212 -40.48481 -38.27986 -35.95418 -35.32854 -35.02721 -31.75711 -31.00535 -30.51481 -29.32210 -26.58172 -24.67983 -23.82960 -22.58202 -22.19478 -19.54907 -19.34903 -19.21655 -18.09763 -17.50129 -16.98872 -16.95285 -16.45406 -15.82865 -15.70286 -15.25117 -14.80534 -14.68815 -14.00669 -13.93421 -13.72479 -13.49094 -13.11499 -12.78190 -12.67721 -12.43656 -12.29484 -11.92285 -11.64448 -11.32293 -11.23925 -11.04938 -10.85806 -10.70077 -9.51241 -8.90483 -8.76278 -8.57617 -6.20497 -0.31746 0.76856 0.98100 1.07203 1.42239 1.54353 1.54826 1.73445 2.14271 2.25296 2.63875 2.75232 3.38120 3.68177 3.73757 3.92968 4.18732 4.28267 4.32630 4.41285 4.42002 4.63139 4.81998 4.94691 5.05130 5.10782 5.25158 5.31163 5.51982 5.59415 5.68802 5.92131 6.09150 6.14615 6.30163 6.56793 6.78082 6.82540 6.98291 7.10274 7.30069 8.39070 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.058441 B = 0.003147 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.002817 B = 8895.984225 C = 9291.277396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.036 3.964 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.261 1.261 7 C -0.501 4.501 8 H 0.073 0.927 9 C 0.057 3.943 10 C -0.153 4.153 11 C -0.122 4.122 12 C 0.003 3.997 13 O -0.315 6.315 14 C 0.105 3.895 15 C 0.272 3.728 16 C -0.307 4.307 17 C 0.226 3.774 18 N -0.601 5.601 19 H 0.438 0.562 20 C 0.532 3.468 21 N -0.801 5.801 22 N -0.597 5.597 23 C -0.167 4.167 24 C -0.211 4.211 25 H 0.288 0.712 26 H 0.110 0.890 27 H 0.120 0.880 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.169 0.831 31 H 0.240 0.760 32 H 0.348 0.652 33 H 0.125 0.875 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.161 -11.050 -6.807 14.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.185 1.185 7 C -0.531 4.531 8 H 0.091 0.909 9 C 0.055 3.945 10 C -0.172 4.172 11 C -0.141 4.141 12 C -0.040 4.040 13 O -0.230 6.230 14 C 0.028 3.972 15 C 0.106 3.894 16 C -0.336 4.336 17 C 0.088 3.912 18 N -0.221 5.221 19 H 0.279 0.721 20 C 0.163 3.837 21 N -0.442 5.442 22 N -0.324 5.324 23 C -0.185 4.185 24 C -0.230 4.230 25 H 0.098 0.902 26 H 0.128 0.872 27 H 0.138 0.862 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.186 0.814 31 H 0.256 0.744 32 H 0.165 0.835 33 H 0.143 0.857 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.220 -12.307 -6.555 15.702 hybrid contribution 0.618 1.226 0.389 1.426 sum -6.602 -11.082 -6.167 14.298 Atomic orbital electron populations 1.69877 1.08795 1.30430 1.36440 1.26671 0.95486 1.04257 0.91407 0.85231 0.79073 0.76297 0.79325 1.18716 1.19411 1.18515 1.19719 0.98311 0.92563 1.42486 0.90914 1.17954 0.92765 0.93091 0.90722 1.20898 0.99259 0.96669 1.00406 1.19993 1.01229 0.89915 1.02939 1.18537 0.96586 0.85062 1.03853 1.85722 1.54851 1.11946 1.70504 1.21128 0.96507 0.80604 0.98947 1.21609 0.90108 0.91296 0.86383 1.21396 1.01071 1.02494 1.08597 1.23277 0.96290 0.80838 0.90825 1.42445 1.27057 1.10256 1.42363 0.72086 1.20229 0.85280 0.89937 0.88263 1.69955 1.28986 1.15527 1.29761 1.69479 1.32570 0.99304 1.31041 1.20726 0.97541 0.98561 1.01691 1.20783 1.03779 0.92731 1.05730 0.90185 0.87174 0.86190 0.89428 0.89668 0.81381 0.74380 0.83518 0.85700 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.58 11.00 21.82 0.24 -42.34 16 2 C 0.04 1.79 5.13 85.24 0.44 2.23 16 3 Si 0.98 37.81 29.60 68.60 2.03 39.84 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 6 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 7 C -0.50 -26.73 9.04 23.40 0.21 -26.52 16 8 H 0.07 3.77 7.91 -2.91 -0.02 3.75 16 9 C 0.06 3.01 5.57 -21.28 -0.12 2.89 16 10 C -0.15 -7.78 8.64 22.49 0.19 -7.59 16 11 C -0.12 -5.45 9.92 22.11 0.22 -5.23 16 12 C 0.00 0.14 6.71 22.79 0.15 0.29 16 13 O -0.32 -10.73 8.62 -89.92 -0.78 -11.51 16 14 C 0.10 3.03 5.28 71.24 0.38 3.41 16 15 C 0.27 7.10 6.83 43.07 0.29 7.39 16 16 C -0.31 -5.81 9.35 22.13 0.21 -5.61 16 17 C 0.23 2.38 11.30 83.43 0.94 3.33 16 18 N -0.60 -9.13 5.42 -197.51 -1.07 -10.20 16 19 H 0.44 4.12 8.93 -92.71 -0.83 3.29 16 20 C 0.53 13.74 8.69 261.57 2.27 16.01 16 21 N -0.80 -22.64 14.19 -59.88 -0.85 -23.49 16 22 N -0.60 -17.12 10.39 -185.60 -1.93 -19.04 16 23 C -0.17 -7.03 8.96 22.11 0.20 -6.83 16 24 C -0.21 -10.11 9.74 22.48 0.22 -9.89 16 25 H 0.29 13.33 8.30 -92.71 -0.77 12.56 16 26 H 0.11 5.83 6.21 -2.91 -0.02 5.81 16 27 H 0.12 4.71 8.06 -2.91 -0.02 4.68 16 28 H 0.09 2.50 7.64 -2.39 -0.02 2.49 16 29 H 0.09 2.48 7.65 -2.39 -0.02 2.46 16 30 H 0.17 3.12 7.05 -2.91 -0.02 3.10 16 31 H 0.24 -0.43 8.06 -2.91 -0.02 -0.45 16 32 H 0.35 10.07 8.90 -92.71 -0.82 9.24 16 33 H 0.13 4.45 6.27 -2.91 -0.02 4.43 16 34 H 0.10 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -67.18 298.73 2.77 -64.41 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: -0.49 Total: 28.45 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: 5.61 Total: -26.11 kcal Atomic # 7 Polarization: -91.47 SS G_CDS: -3.61 Total: -95.08 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -0.78 Total: -11.51 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -67.18 2.77 -64.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385051863.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.746 kcal (2) G-P(sol) polarization free energy of solvation -67.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds