Wall clock time and date at job start Mon Mar 30 2020 04:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 6 6 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 7 7 C 1.50700 * 126.03597 * 0.25055 * 6 2 1 8 8 C 1.53007 * 109.47143 * 90.00096 * 7 6 2 9 9 O 1.42894 * 109.46940 * 179.97438 * 8 7 6 10 10 C 1.42908 * 113.99847 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.46961 * 180.02562 * 10 9 8 12 12 O 1.42888 * 109.47088 * 65.00649 * 11 10 9 13 13 C 1.42909 * 114.00130 * 179.97438 * 12 11 10 14 14 C 1.50693 * 109.47280 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00036 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99986 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99869 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00202 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.46980 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46956 * 120.00022 * 18 16 14 21 21 H 1.48498 * 109.47181 * 240.00088 * 18 16 14 22 22 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 23 23 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 24 24 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 25 25 H 1.08008 * 124.91196 * 179.97438 * 4 3 2 26 26 H 1.09000 * 109.46916 * 209.99905 * 7 6 2 27 27 H 1.08999 * 109.47044 * 329.99869 * 7 6 2 28 28 H 1.08997 * 109.46409 * 300.00065 * 8 7 6 29 29 H 1.08999 * 109.46626 * 59.99718 * 8 7 6 30 30 H 1.08995 * 109.47404 * 300.00581 * 10 9 8 31 31 H 1.09009 * 109.46407 * 60.00237 * 10 9 8 32 32 H 1.09006 * 109.46521 * 185.00254 * 11 10 9 33 33 H 1.08999 * 109.47340 * 305.00284 * 11 10 9 34 34 H 1.09004 * 109.46494 * 300.00132 * 13 12 11 35 35 H 1.09005 * 109.46874 * 59.99544 * 13 12 11 36 36 H 0.96997 * 120.00044 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 16 3.9332 -0.6730 0.0121 6 6 2.2300 -1.1239 0.0058 7 6 1.6847 -2.5288 0.0078 8 6 1.5055 -3.0084 -1.4341 9 8 0.9890 -4.3407 -1.4322 10 6 0.7830 -4.8861 -2.7369 11 6 0.2308 -6.3077 -2.6141 12 8 -1.0650 -6.2650 -2.0134 13 6 -1.6736 -7.5479 -1.8525 14 6 -3.0283 -7.3846 -1.2128 15 1 -3.3886 -6.3996 -0.9553 16 6 -3.8081 -8.4926 -0.9572 17 7 -3.3694 -9.6921 -1.2712 18 14 -5.4876 -8.2902 -0.1649 19 1 -5.7453 -6.8496 0.0876 20 1 -6.5317 -8.8274 -1.0740 21 1 -5.5211 -9.0323 1.1208 22 1 -0.3633 -0.0005 -1.0276 23 1 -0.3633 -0.8898 0.5143 24 1 -0.3633 0.8902 0.5135 25 1 4.2059 1.8027 0.0057 26 1 2.3811 -3.1881 0.5260 27 1 0.7217 -2.5441 0.5181 28 1 0.8092 -2.3490 -1.9522 29 1 2.4686 -2.9931 -1.9444 30 1 0.0713 -4.2660 -3.2818 31 1 1.7309 -4.9093 -3.2748 32 1 0.1573 -6.7557 -3.6051 33 1 0.8993 -6.9048 -1.9940 34 1 -1.7866 -8.0213 -2.8278 35 1 -1.0447 -8.1712 -1.2167 36 1 -3.9181 -10.4715 -1.0918 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385347092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:55 Heat of formation + Delta-G solvation = -62.076853 kcal Electronic energy + Delta-G solvation = -17708.117090 eV Core-core repulsion = 14705.185281 eV Total energy + Delta-G solvation = -3002.931809 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.17047 -38.07550 -36.40239 -33.99199 -32.70182 -30.87551 -29.38244 -27.05545 -26.52736 -24.92777 -22.72267 -22.39863 -21.90544 -19.05590 -18.36089 -16.79073 -16.40845 -16.30372 -15.67952 -15.24064 -15.11113 -14.40996 -14.33975 -14.14147 -13.80179 -13.26261 -13.02294 -12.87656 -12.74555 -12.47438 -11.89111 -11.75593 -11.53366 -11.18207 -11.10755 -10.81319 -10.75899 -10.51333 -9.99878 -9.91151 -9.53101 -9.45891 -9.06719 -8.96149 -8.81970 -8.15646 -6.09294 -4.10515 0.42601 1.08908 1.47767 2.51959 3.30672 3.36959 3.43821 3.71349 3.99177 4.36327 4.75618 4.78286 4.85283 4.89606 5.05984 5.11261 5.27296 5.32973 5.41397 5.47808 5.50820 5.58046 5.65415 5.78720 5.86973 6.00893 6.02707 6.11546 6.22565 7.11097 7.35038 7.44942 7.45296 7.82010 8.17209 8.59705 9.03379 9.54242 11.02459 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.027773 B = 0.003024 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.949174 B = 9258.200661 C = 9950.035035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.063 3.937 3 N -0.467 5.467 4 C 0.015 3.985 5 S 0.117 5.883 6 C -0.212 4.212 7 C -0.042 4.042 8 C 0.069 3.931 9 O -0.372 6.372 10 C 0.070 3.930 11 C 0.063 3.937 12 O -0.389 6.389 13 C 0.194 3.806 14 C -0.512 4.512 15 H 0.067 0.933 16 C 0.055 3.945 17 N -0.900 5.900 18 Si 0.908 3.092 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.282 1.282 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.198 0.802 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.004 0.996 35 H 0.006 0.994 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.489 18.398 0.453 24.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.069 4.069 3 N -0.181 5.181 4 C -0.283 4.283 5 S 0.370 5.630 6 C -0.333 4.333 7 C -0.082 4.082 8 C -0.009 4.009 9 O -0.292 6.292 10 C -0.007 4.007 11 C -0.014 4.014 12 O -0.309 6.309 13 C 0.119 3.881 14 C -0.550 4.550 15 H 0.085 0.915 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.735 3.265 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.208 1.208 22 H 0.096 0.904 23 H 0.100 0.900 24 H 0.094 0.906 25 H 0.215 0.785 26 H 0.104 0.896 27 H 0.118 0.882 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.022 0.978 35 H 0.024 0.976 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.062 18.325 0.695 24.378 hybrid contribution -1.320 -0.058 0.000 1.321 sum 14.742 18.267 0.695 23.484 Atomic orbital electron populations 1.20438 0.86705 1.03708 1.03328 1.20324 0.98477 0.86060 1.02006 1.66203 1.05040 1.31639 1.15193 1.28279 0.95275 1.00012 1.04696 1.84058 1.07269 1.03632 1.68014 1.25576 0.94873 1.00415 1.12396 1.19897 1.02715 0.88192 0.97367 1.22344 0.97684 0.84999 0.95893 1.87999 1.85205 1.27792 1.28163 1.22583 0.98378 0.95208 0.84515 1.22256 0.87903 0.93913 0.97361 1.87911 1.28328 1.33231 1.81399 1.20220 0.92835 0.79568 0.95437 1.21102 1.00337 0.93933 1.39671 0.91456 1.24960 0.98911 0.94824 0.95907 1.69976 1.37912 0.97997 1.48030 0.86280 0.82956 0.78424 0.78835 1.19440 1.20874 1.20831 0.90400 0.90049 0.90605 0.78484 0.89584 0.88243 0.93115 0.93739 0.92678 0.92814 0.92943 0.93637 0.97777 0.97633 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.06 36.01 0.36 -0.45 16 2 C 0.06 0.70 6.74 -84.22 -0.57 0.14 16 3 N -0.47 -5.32 10.53 -11.90 -0.13 -5.44 16 4 C 0.02 0.13 12.23 51.58 0.63 0.76 16 5 S 0.12 0.99 23.22 -107.50 -2.50 -1.50 16 6 C -0.21 -2.24 5.84 -35.92 -0.21 -2.45 16 7 C -0.04 -0.47 5.80 -27.88 -0.16 -0.63 16 8 C 0.07 0.84 5.92 37.16 0.22 1.06 16 9 O -0.37 -6.12 10.31 -40.08 -0.41 -6.53 16 10 C 0.07 1.07 6.32 37.16 0.23 1.31 16 11 C 0.06 1.20 6.32 37.16 0.23 1.43 16 12 O -0.39 -9.70 10.29 -40.08 -0.41 -10.11 16 13 C 0.19 5.42 5.69 36.00 0.20 5.63 16 14 C -0.51 -15.35 9.43 -34.44 -0.32 -15.67 16 15 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 18 Si 0.91 22.03 29.54 -169.99 -5.02 17.01 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.08 0.76 6.71 -51.92 -0.35 0.41 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.20 1.00 8.06 -52.48 -0.42 0.58 16 26 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.10 1.14 6.75 -51.93 -0.35 0.79 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.00 0.13 8.14 -51.93 -0.42 -0.30 16 35 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 325.52 15.07 4.91 4.91 Total: -1.00 -33.76 325.52 -7.62 -41.38 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: -5.32 Total: -5.90 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 0.53 Total: -7.36 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 0.61 Total: -31.89 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.83 Total: -16.64 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.50 Total: -1.50 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.76 -7.62 -41.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385347092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.696 kcal (2) G-P(sol) polarization free energy of solvation -33.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds