Wall clock time and date at job start Mon Mar 30 2020 04:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 6 6 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 7 7 C 1.50700 * 126.03597 * 0.25055 * 6 2 1 8 8 C 1.53007 * 109.47143 * 90.00096 * 7 6 2 9 9 O 1.42894 * 109.46940 * 179.97438 * 8 7 6 10 10 C 1.42908 * 113.99847 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.46961 * 180.02562 * 10 9 8 12 12 O 1.42888 * 109.47088 * 65.00649 * 11 10 9 13 13 C 1.42909 * 114.00130 * 179.97438 * 12 11 10 14 14 C 1.50693 * 109.47280 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00036 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99986 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99869 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00202 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.46980 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46956 * 120.00022 * 18 16 14 21 21 H 1.48498 * 109.47181 * 240.00088 * 18 16 14 22 22 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 23 23 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 24 24 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 25 25 H 1.08008 * 124.91196 * 179.97438 * 4 3 2 26 26 H 1.09000 * 109.46916 * 209.99905 * 7 6 2 27 27 H 1.08999 * 109.47044 * 329.99869 * 7 6 2 28 28 H 1.08997 * 109.46409 * 300.00065 * 8 7 6 29 29 H 1.08999 * 109.46626 * 59.99718 * 8 7 6 30 30 H 1.08995 * 109.47404 * 300.00581 * 10 9 8 31 31 H 1.09009 * 109.46407 * 60.00237 * 10 9 8 32 32 H 1.09006 * 109.46521 * 185.00254 * 11 10 9 33 33 H 1.08999 * 109.47340 * 305.00284 * 11 10 9 34 34 H 1.09004 * 109.46494 * 300.00132 * 13 12 11 35 35 H 1.09005 * 109.46874 * 59.99544 * 13 12 11 36 36 H 0.96997 * 120.00044 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 16 3.9332 -0.6730 0.0121 6 6 2.2300 -1.1239 0.0058 7 6 1.6847 -2.5288 0.0078 8 6 1.5055 -3.0084 -1.4341 9 8 0.9890 -4.3407 -1.4322 10 6 0.7830 -4.8861 -2.7369 11 6 0.2308 -6.3077 -2.6141 12 8 -1.0650 -6.2650 -2.0134 13 6 -1.6736 -7.5479 -1.8525 14 6 -3.0283 -7.3846 -1.2128 15 1 -3.3886 -6.3996 -0.9553 16 6 -3.8081 -8.4926 -0.9572 17 7 -3.3694 -9.6921 -1.2712 18 14 -5.4876 -8.2902 -0.1649 19 1 -5.7453 -6.8496 0.0876 20 1 -6.5317 -8.8274 -1.0740 21 1 -5.5211 -9.0323 1.1208 22 1 -0.3633 -0.0005 -1.0276 23 1 -0.3633 -0.8898 0.5143 24 1 -0.3633 0.8902 0.5135 25 1 4.2059 1.8027 0.0057 26 1 2.3811 -3.1881 0.5260 27 1 0.7217 -2.5441 0.5181 28 1 0.8092 -2.3490 -1.9522 29 1 2.4686 -2.9931 -1.9444 30 1 0.0713 -4.2660 -3.2818 31 1 1.7309 -4.9093 -3.2748 32 1 0.1573 -6.7557 -3.6051 33 1 0.8993 -6.9048 -1.9940 34 1 -1.7866 -8.0213 -2.8278 35 1 -1.0447 -8.1712 -1.2167 36 1 -3.9181 -10.4715 -1.0918 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385347092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:55 Heat of formation + Delta-G solvation = -84.769805 kcal Electronic energy + Delta-G solvation = -17709.101130 eV Core-core repulsion = 14705.185281 eV Total energy + Delta-G solvation = -3003.915849 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.93180 -39.36571 -38.13504 -35.07292 -34.73072 -31.87448 -30.75505 -28.92439 -27.59103 -25.67521 -24.54741 -23.62840 -23.36596 -19.83041 -19.09940 -18.65043 -17.93934 -17.70310 -16.82757 -16.58547 -16.31000 -16.00349 -15.85279 -15.53180 -14.66001 -14.54568 -14.27084 -13.90323 -13.58654 -13.52916 -13.45403 -13.15493 -12.91138 -12.70828 -12.53297 -12.49846 -12.20807 -11.93055 -11.77681 -11.27594 -10.89285 -10.64837 -10.57980 -10.26460 -10.23150 -9.69686 -8.32566 -6.44828 -0.29762 0.39034 0.76391 1.40335 1.41967 1.56872 1.75139 2.35195 2.65390 3.01163 3.18339 3.32493 3.89905 3.94608 4.04062 4.20293 4.24978 4.29131 4.32543 4.42956 4.57378 4.60870 4.68099 4.69187 4.76063 4.87506 4.90109 4.94998 5.03615 5.17395 5.33741 5.54948 5.95752 6.24215 6.53682 6.72679 6.82064 7.27196 8.80143 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.027773 B = 0.003024 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.949174 B = 9258.200661 C = 9950.035035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.051 3.949 3 N -0.500 5.500 4 C 0.022 3.978 5 S 0.153 5.847 6 C -0.232 4.232 7 C -0.037 4.037 8 C 0.068 3.932 9 O -0.404 6.404 10 C 0.075 3.925 11 C 0.050 3.950 12 O -0.407 6.407 13 C 0.207 3.793 14 C -0.549 4.549 15 H 0.060 0.940 16 C 0.006 3.994 17 N -0.931 5.931 18 Si 0.984 3.016 19 H -0.264 1.264 20 H -0.270 1.270 21 H -0.271 1.271 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.232 0.768 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.044 0.956 34 H -0.010 1.010 35 H -0.016 1.016 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.978 19.446 0.506 25.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 N -0.214 5.214 4 C -0.275 4.275 5 S 0.407 5.593 6 C -0.353 4.353 7 C -0.077 4.077 8 C -0.008 4.008 9 O -0.324 6.324 10 C -0.002 4.002 11 C -0.027 4.027 12 O -0.327 6.327 13 C 0.133 3.867 14 C -0.586 4.586 15 H 0.079 0.921 16 C -0.193 4.193 17 N -0.570 5.570 18 Si 0.807 3.193 19 H -0.188 1.188 20 H -0.195 1.195 21 H -0.196 1.196 22 H 0.098 0.902 23 H 0.099 0.901 24 H 0.096 0.904 25 H 0.248 0.752 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.008 0.992 35 H 0.002 0.998 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.582 19.380 0.736 25.516 hybrid contribution -1.314 -0.347 -0.046 1.360 sum 15.268 19.033 0.690 24.409 Atomic orbital electron populations 1.20449 0.86583 1.03757 1.03458 1.20509 0.99006 0.86431 1.02112 1.66251 1.06252 1.31923 1.17015 1.28915 0.95034 1.01231 1.02356 1.83912 1.05157 1.03084 1.67160 1.25528 0.96454 0.99763 1.13525 1.19787 1.02390 0.88789 0.96693 1.22488 0.98372 0.83142 0.96847 1.87947 1.85815 1.29835 1.28834 1.22584 1.00180 0.92718 0.84672 1.22661 0.85252 0.97033 0.97709 1.87861 1.31197 1.31435 1.82230 1.19850 0.92367 0.80569 0.93962 1.21424 1.01758 0.94154 1.41285 0.92134 1.25982 1.03293 0.94148 0.95859 1.70075 1.39741 0.98918 1.48298 0.85119 0.77289 0.78756 0.78135 1.18846 1.19483 1.19617 0.90214 0.90148 0.90385 0.75181 0.89477 0.89279 0.92944 0.91878 0.92412 0.88684 0.91213 0.93795 0.99215 0.99785 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.64 10.06 71.24 0.72 -0.92 16 2 C 0.05 1.11 6.74 41.52 0.28 1.39 16 3 N -0.50 -10.77 10.53 -191.55 -2.02 -12.79 16 4 C 0.02 0.33 12.23 130.65 1.60 1.93 16 5 S 0.15 2.29 23.22 -56.49 -1.31 0.97 16 6 C -0.23 -4.69 5.84 24.64 0.14 -4.55 16 7 C -0.04 -0.81 5.80 29.85 0.17 -0.64 16 8 C 0.07 1.62 5.92 71.98 0.43 2.04 16 9 O -0.40 -13.03 10.31 -144.34 -1.49 -14.51 16 10 C 0.07 2.19 6.32 71.98 0.45 2.65 16 11 C 0.05 1.90 6.32 71.98 0.45 2.35 16 12 O -0.41 -20.73 10.29 -144.34 -1.49 -22.22 16 13 C 0.21 11.99 5.69 71.23 0.41 12.39 16 14 C -0.55 -33.51 9.43 25.60 0.24 -33.26 16 15 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 16 C 0.01 0.32 5.46 84.65 0.46 0.79 16 17 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 18 Si 0.98 44.93 29.54 68.60 2.03 46.96 16 19 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 20 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.08 1.55 6.71 -2.38 -0.02 1.53 16 24 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.23 1.59 8.06 -2.91 -0.02 1.57 16 26 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.09 2.09 6.75 -2.39 -0.02 2.08 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 34 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 35 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 36 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -72.86 325.52 2.42 -70.44 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: 1.06 Total: 3.28 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 5.36 Total: -15.83 kcal Atomic # 7 Polarization: -67.36 SS G_CDS: -1.73 Total: -69.09 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -2.97 Total: -36.73 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -1.31 Total: 0.97 kcal Total: -72.86 2.42 -70.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385347092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.331 kcal (2) G-P(sol) polarization free energy of solvation -72.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds