Wall clock time and date at job start Mon Mar 30 2020 04:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37875 * 120.00221 * 300.00211 * 4 2 1 7 7 N 1.31509 * 120.00392 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 119.99966 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47157 * 90.00092 * 8 6 4 10 10 H 1.48496 * 109.47225 * 210.00367 * 8 6 4 11 11 H 1.48502 * 109.47022 * 330.00490 * 8 6 4 12 12 N 1.46500 * 109.47007 * 240.00089 * 2 1 3 13 13 C 1.46497 * 119.99968 * 299.99987 * 12 2 1 14 14 C 1.36536 * 120.00106 * 119.99863 * 12 2 1 15 15 N 1.32358 * 120.18778 * 359.72459 * 14 12 2 16 16 C 1.32797 * 120.95637 * 179.76226 * 15 14 12 17 17 C 1.50697 * 119.32671 * 180.26194 * 16 15 14 18 18 Cl 1.80307 * 109.47328 * 270.25379 * 17 16 15 19 19 N 1.31417 * 121.34052 * 0.52091 * 16 15 14 20 20 C 1.34685 * 120.30447 * 359.74210 * 19 16 15 21 21 N 1.31261 * 120.48756 * 180.02562 * 20 19 16 22 22 N 1.36514 * 120.19473 * 180.02562 * 14 12 2 23 23 H 0.96996 * 120.62418 * 359.97438 * 22 14 12 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 26 26 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 27 27 H 0.96997 * 120.00462 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.47466 * 90.00240 * 13 12 2 29 29 H 1.09002 * 109.47260 * 210.00281 * 13 12 2 30 30 H 1.09000 * 109.47562 * 329.99730 * 13 12 2 31 31 H 1.09001 * 109.47357 * 30.25061 * 17 16 15 32 32 H 1.09005 * 109.47121 * 150.25349 * 17 16 15 33 33 H 0.96999 * 119.99500 * 359.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1380 -0.8590 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8021 0.8744 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4280 14 6 2.8032 -0.0271 -2.0950 15 7 3.1208 1.2417 -1.8920 16 6 3.8870 1.9004 -2.7537 17 6 4.2306 3.3425 -2.4833 18 17 2.9793 4.4079 -3.2251 19 7 4.3475 1.3217 -3.8400 20 6 4.0525 0.0337 -4.1010 21 7 4.5110 -0.5481 -5.1847 22 7 3.2600 -0.6666 -3.2112 23 1 3.0329 -1.5950 -3.3765 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 1.9040 -0.5275 4.4375 28 1 0.7375 -2.1444 -1.9994 29 1 2.4628 -2.5819 -1.9864 30 1 1.5295 -2.5969 -0.4709 31 1 4.2613 3.5132 -1.4071 32 1 5.2049 3.5711 -2.9154 33 1 5.0663 -0.0499 -5.8046 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390594895.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:35 Heat of formation + Delta-G solvation = 87.879496 kcal Electronic energy + Delta-G solvation = -18941.612983 eV Core-core repulsion = 15871.892471 eV Total energy + Delta-G solvation = -3069.720513 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.089 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.18679 -37.78683 -36.22258 -35.12300 -34.17843 -32.51600 -30.74400 -30.31829 -29.06812 -26.82468 -25.39896 -23.24417 -22.21117 -20.30050 -18.84117 -18.30571 -17.01454 -16.83369 -15.87828 -15.33697 -15.25444 -14.53691 -14.20684 -13.93331 -13.62020 -13.51368 -13.04822 -12.46992 -12.26582 -11.94273 -11.87861 -11.45032 -11.25708 -11.13305 -10.92360 -10.64993 -10.41642 -10.34940 -9.80450 -9.63200 -9.44863 -9.07130 -8.83092 -8.40661 -7.59708 -6.35362 -4.39978 0.89436 2.11575 2.29023 2.49502 3.09957 3.21945 3.25135 3.26350 3.95378 4.15143 4.16407 4.44189 4.96963 5.07088 5.18822 5.30994 5.44260 5.60265 5.74264 5.89491 5.95632 6.06344 6.10812 6.20022 6.50239 6.61712 6.91810 7.16068 7.28507 7.43874 7.69496 8.17826 8.40461 8.61610 8.75364 9.22091 10.76488 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.017341 B = 0.006989 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.323149 B = 4005.617558 C = 5083.756985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.238 3.762 3 H 0.084 0.916 4 C -0.540 4.540 5 H 0.080 0.920 6 C 0.082 3.918 7 N -0.887 5.887 8 Si 0.880 3.120 9 H -0.276 1.276 10 H -0.291 1.291 11 H -0.258 1.258 12 N -0.533 5.533 13 C 0.072 3.928 14 C 0.674 3.326 15 N -0.630 5.630 16 C 0.421 3.579 17 C 0.036 3.964 18 Cl -0.155 7.155 19 N -0.629 5.629 20 C 0.571 3.429 21 N -0.776 5.776 22 N -0.662 5.662 23 H 0.418 0.582 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.037 0.963 27 H 0.269 0.731 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.455 3.793 -9.111 9.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.137 3.863 3 H 0.102 0.898 4 C -0.578 4.578 5 H 0.098 0.902 6 C -0.122 4.122 7 N -0.523 5.523 8 Si 0.709 3.291 9 H -0.203 1.203 10 H -0.218 1.218 11 H -0.182 1.182 12 N -0.241 5.241 13 C -0.071 4.071 14 C 0.315 3.685 15 N -0.376 5.376 16 C 0.142 3.858 17 C -0.028 4.028 18 Cl -0.128 7.128 19 N -0.370 5.370 20 C 0.200 3.800 21 N -0.419 5.419 22 N -0.299 5.299 23 H 0.258 0.742 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.126 0.874 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.478 3.554 -9.239 9.911 hybrid contribution -0.580 0.322 0.024 0.664 sum -1.058 3.877 -9.216 10.054 Atomic orbital electron populations 1.22503 0.98273 1.01514 0.99974 1.19712 0.90360 0.95705 0.80485 0.89842 1.21023 1.33793 1.14808 0.88214 0.90186 1.24806 0.95418 0.96601 0.95410 1.69845 1.44362 1.39954 0.98167 0.86955 0.80392 0.83651 0.78055 1.20285 1.21844 1.18230 1.46835 1.45318 1.11325 1.20657 1.21961 0.99701 0.80697 1.04762 1.19141 0.83192 0.86420 0.79759 1.68578 1.29408 1.04373 1.35210 1.22498 0.84081 0.94797 0.84474 1.22848 0.93486 0.83947 1.02566 1.98730 1.60327 1.68128 1.85650 1.70084 1.34593 1.08916 1.23455 1.19894 0.87246 0.83673 0.89225 1.69728 1.26671 1.39069 1.06426 1.43293 1.49037 1.16739 1.20873 0.74236 0.92372 0.92398 0.94412 0.92063 0.91865 0.92175 0.87368 0.85853 0.86199 0.82898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 8.67 37.16 0.32 -2.72 16 2 C 0.24 4.86 2.24 -69.08 -0.15 4.70 16 3 H 0.08 1.85 5.84 -51.93 -0.30 1.54 16 4 C -0.54 -13.12 8.57 -34.44 -0.30 -13.42 16 5 H 0.08 2.12 7.58 -52.49 -0.40 1.72 16 6 C 0.08 2.11 5.45 -17.82 -0.10 2.01 16 7 N -0.89 -24.59 13.96 55.43 0.77 -23.82 16 8 Si 0.88 19.56 24.37 -169.99 -4.14 15.41 16 9 H -0.28 -5.93 6.87 56.52 0.39 -5.54 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.26 -5.51 6.53 56.52 0.37 -5.14 16 12 N -0.53 -9.22 2.80 -177.05 -0.50 -9.71 16 13 C 0.07 0.96 9.24 59.85 0.55 1.51 16 14 C 0.67 11.79 8.23 -320.26 -2.64 9.15 16 15 N -0.63 -11.55 8.80 -11.22 -0.10 -11.65 16 16 C 0.42 7.02 7.05 -156.65 -1.10 5.92 16 17 C 0.04 0.47 7.10 36.00 0.26 0.73 16 18 Cl -0.15 -2.12 29.13 -51.86 -1.51 -3.63 16 19 N -0.63 -10.96 10.44 -11.47 -0.12 -11.08 16 20 C 0.57 10.02 8.78 -321.77 -2.82 7.19 16 21 N -0.78 -13.37 14.19 29.90 0.42 -12.95 16 22 N -0.66 -10.53 5.35 -14.36 -0.08 -10.61 16 23 H 0.42 5.63 6.73 -40.82 -0.27 5.36 16 24 H 0.06 0.99 7.67 -51.93 -0.40 0.59 16 25 H 0.06 1.14 3.27 -51.93 -0.17 0.97 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 30 H 0.11 1.58 7.02 -51.93 -0.36 1.21 16 31 H 0.12 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.35 5.76 8.91 -40.82 -0.36 5.39 16 LS Contribution 289.21 15.07 4.36 4.36 Total: -1.00 -28.95 289.21 -10.35 -39.30 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -3.48 Total: 9.31 kcal Atomic # 6 Polarization: 21.05 SS G_CDS: -5.98 Total: 15.07 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: 0.41 Total: -79.82 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.14 Total: 15.41 kcal Atomic # 17 Polarization: -2.12 SS G_CDS: -1.51 Total: -3.63 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.95 -10.35 -39.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390594895.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.179 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds