Wall clock time and date at job start Mon Mar 30 2020 04:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37875 * 120.00221 * 300.00211 * 4 2 1 7 7 N 1.31509 * 120.00392 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 119.99966 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47157 * 90.00092 * 8 6 4 10 10 H 1.48496 * 109.47225 * 210.00367 * 8 6 4 11 11 H 1.48502 * 109.47022 * 330.00490 * 8 6 4 12 12 N 1.46500 * 109.47007 * 240.00089 * 2 1 3 13 13 C 1.46497 * 119.99968 * 299.99987 * 12 2 1 14 14 C 1.36536 * 120.00106 * 119.99863 * 12 2 1 15 15 N 1.32358 * 120.18778 * 359.72459 * 14 12 2 16 16 C 1.32797 * 120.95637 * 179.76226 * 15 14 12 17 17 C 1.50697 * 119.32671 * 180.26194 * 16 15 14 18 18 Cl 1.80307 * 109.47328 * 270.25379 * 17 16 15 19 19 N 1.31417 * 121.34052 * 0.52091 * 16 15 14 20 20 C 1.34685 * 120.30447 * 359.74210 * 19 16 15 21 21 N 1.31261 * 120.48756 * 180.02562 * 20 19 16 22 22 N 1.36514 * 120.19473 * 180.02562 * 14 12 2 23 23 H 0.96996 * 120.62418 * 359.97438 * 22 14 12 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 26 26 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 27 27 H 0.96997 * 120.00462 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.47466 * 90.00240 * 13 12 2 29 29 H 1.09002 * 109.47260 * 210.00281 * 13 12 2 30 30 H 1.09000 * 109.47562 * 329.99730 * 13 12 2 31 31 H 1.09001 * 109.47357 * 30.25061 * 17 16 15 32 32 H 1.09005 * 109.47121 * 150.25349 * 17 16 15 33 33 H 0.96999 * 119.99500 * 359.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1380 -0.8590 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8021 0.8744 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4280 14 6 2.8032 -0.0271 -2.0950 15 7 3.1208 1.2417 -1.8920 16 6 3.8870 1.9004 -2.7537 17 6 4.2306 3.3425 -2.4833 18 17 2.9793 4.4079 -3.2251 19 7 4.3475 1.3217 -3.8400 20 6 4.0525 0.0337 -4.1010 21 7 4.5110 -0.5481 -5.1847 22 7 3.2600 -0.6666 -3.2112 23 1 3.0329 -1.5950 -3.3765 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 1.9040 -0.5275 4.4375 28 1 0.7375 -2.1444 -1.9994 29 1 2.4628 -2.5819 -1.9864 30 1 1.5295 -2.5969 -0.4709 31 1 4.2613 3.5132 -1.4071 32 1 5.2049 3.5711 -2.9154 33 1 5.0663 -0.0499 -5.8046 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390594895.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:35 Heat of formation + Delta-G solvation = 72.745787 kcal Electronic energy + Delta-G solvation = -18942.269230 eV Core-core repulsion = 15871.892471 eV Total energy + Delta-G solvation = -3070.376759 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.089 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.50145 -39.16910 -37.34425 -36.36231 -35.71463 -34.20326 -32.11656 -31.80321 -30.22305 -28.00652 -27.17645 -24.70768 -23.45114 -21.81688 -20.16512 -19.62513 -18.71634 -18.32824 -17.23212 -16.81373 -16.68541 -15.86591 -15.43109 -15.25702 -14.88006 -14.64684 -14.58917 -14.06808 -13.75200 -13.28822 -13.20465 -12.84039 -12.71533 -12.60125 -12.41255 -11.99461 -11.75267 -11.51038 -11.44256 -11.36466 -10.78526 -10.75960 -10.41256 -9.78249 -8.95082 -8.32306 -6.39190 -0.37706 0.82564 0.95415 1.34830 1.35443 1.45023 1.52221 1.98422 2.31854 2.76703 2.85457 3.04535 3.17087 3.98599 4.16696 4.26749 4.31445 4.42039 4.45804 4.56698 4.61638 4.73478 4.79183 4.84008 5.04947 5.21560 5.47375 5.57312 5.69181 6.02435 6.26827 6.40382 6.64614 7.09199 7.26339 7.43722 8.82974 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.017341 B = 0.006989 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.323149 B = 4005.617558 C = 5083.756985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.245 3.755 3 H 0.070 0.930 4 C -0.529 4.529 5 H 0.047 0.953 6 C 0.030 3.970 7 N -0.938 5.938 8 Si 0.935 3.065 9 H -0.261 1.261 10 H -0.301 1.301 11 H -0.243 1.243 12 N -0.538 5.538 13 C 0.067 3.933 14 C 0.668 3.332 15 N -0.652 5.652 16 C 0.416 3.584 17 C 0.038 3.962 18 Cl -0.159 7.159 19 N -0.638 5.638 20 C 0.559 3.441 21 N -0.780 5.780 22 N -0.650 5.650 23 H 0.428 0.572 24 H 0.070 0.930 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.268 0.732 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.135 0.865 32 H 0.144 0.856 33 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.310 4.543 -10.490 11.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.143 3.857 3 H 0.088 0.912 4 C -0.568 4.568 5 H 0.065 0.935 6 C -0.170 4.170 7 N -0.577 5.577 8 Si 0.761 3.239 9 H -0.187 1.187 10 H -0.229 1.229 11 H -0.166 1.166 12 N -0.246 5.246 13 C -0.075 4.075 14 C 0.309 3.691 15 N -0.398 5.398 16 C 0.137 3.863 17 C -0.026 4.026 18 Cl -0.133 7.133 19 N -0.379 5.379 20 C 0.188 3.812 21 N -0.423 5.423 22 N -0.288 5.288 23 H 0.270 0.730 24 H 0.089 0.911 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.153 0.847 32 H 0.162 0.838 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.339 4.283 -10.664 11.570 hybrid contribution -0.228 0.013 0.384 0.447 sum -1.567 4.296 -10.280 11.251 Atomic orbital electron populations 1.22381 0.96220 1.02593 1.00500 1.19358 0.91750 0.94611 0.80019 0.91193 1.21240 1.32204 1.13452 0.89905 0.93496 1.25560 0.96892 0.99367 0.95181 1.69986 1.46816 1.42134 0.98754 0.86075 0.79440 0.80454 0.77887 1.18710 1.22886 1.16643 1.46728 1.45458 1.12565 1.19896 1.22183 1.02015 0.78585 1.04677 1.19156 0.83163 0.86566 0.80199 1.68606 1.30086 1.05037 1.36040 1.23060 0.83330 0.96041 0.83855 1.23057 0.94168 0.81846 1.03533 1.98732 1.60760 1.67997 1.85780 1.70108 1.34966 1.09019 1.23835 1.20093 0.87553 0.84084 0.89507 1.69726 1.26821 1.39273 1.06502 1.43128 1.48478 1.17114 1.20127 0.72963 0.91148 0.93387 0.92185 0.92238 0.88857 0.89987 0.89010 0.84693 0.83816 0.82557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.45 8.67 71.98 0.62 -4.82 16 2 C 0.24 9.63 2.24 44.24 0.10 9.73 16 3 H 0.07 2.98 5.84 -2.39 -0.01 2.97 16 4 C -0.53 -25.81 8.57 25.60 0.22 -25.59 16 5 H 0.05 2.55 7.58 -2.91 -0.02 2.52 16 6 C 0.03 1.53 5.45 84.66 0.46 1.99 16 7 N -0.94 -53.23 13.96 21.45 0.30 -52.93 16 8 Si 0.93 39.75 24.37 68.60 1.67 41.42 16 9 H -0.26 -10.41 6.87 99.48 0.68 -9.73 16 10 H -0.30 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.24 -9.64 6.53 99.48 0.65 -8.99 16 12 N -0.54 -17.68 2.80 -714.07 -2.00 -19.68 16 13 C 0.07 1.65 9.24 127.77 1.18 2.83 16 14 C 0.67 22.23 8.23 260.60 2.15 24.37 16 15 N -0.65 -22.84 8.80 -189.40 -1.67 -24.51 16 16 C 0.42 13.15 7.05 138.56 0.98 14.12 16 17 C 0.04 0.91 7.10 71.23 0.51 1.42 16 18 Cl -0.16 -4.05 29.13 -2.72 -0.08 -4.12 16 19 N -0.64 -21.13 10.44 -190.19 -1.99 -23.12 16 20 C 0.56 18.65 8.78 261.12 2.29 20.94 16 21 N -0.78 -25.56 14.19 -59.30 -0.84 -26.40 16 22 N -0.65 -19.42 5.35 -199.34 -1.07 -20.49 16 23 H 0.43 10.56 6.73 -92.71 -0.62 9.94 16 24 H 0.07 2.21 7.67 -2.39 -0.02 2.20 16 25 H 0.05 1.75 3.27 -2.39 -0.01 1.74 16 26 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 27 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 29 H 0.08 1.63 6.43 -2.39 -0.02 1.62 16 30 H 0.09 2.60 7.02 -2.39 -0.02 2.58 16 31 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.14 2.71 8.14 -2.38 -0.02 2.69 16 33 H 0.36 11.09 8.91 -92.71 -0.83 10.26 16 Total: -1.00 -61.96 289.21 2.49 -59.47 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: -0.35 Total: 25.37 kcal Atomic # 6 Polarization: 36.49 SS G_CDS: 8.51 Total: 44.99 kcal Atomic # 7 Polarization: -159.87 SS G_CDS: -7.26 Total: -167.13 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 1.67 Total: 41.42 kcal Atomic # 17 Polarization: -4.05 SS G_CDS: -0.08 Total: -4.12 kcal Total: -61.96 2.49 -59.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390594895.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.219 kcal (2) G-P(sol) polarization free energy of solvation -61.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds