Wall clock time and date at job start Mon Mar 30 2020 04:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46949 * 2 1 4 4 C 1.50697 * 109.47139 * 240.00839 * 2 1 3 5 5 H 1.08007 * 119.99489 * 240.00075 * 4 2 1 6 6 C 1.37880 * 120.00568 * 59.99514 * 4 2 1 7 7 N 1.31520 * 119.99395 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00153 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47136 * 60.00042 * 8 6 4 10 10 H 1.48498 * 109.47059 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47119 * 299.99671 * 8 6 4 12 12 N 1.46494 * 109.47411 * 120.00372 * 2 1 3 13 13 N 1.40104 * 120.00049 * 270.00106 * 12 2 1 14 14 C 1.29976 * 119.99710 * 179.97438 * 13 12 2 15 15 C 1.46836 * 119.99822 * 180.02562 * 14 13 12 16 16 C 1.34767 * 126.00509 * 359.97438 * 15 14 13 17 17 Cl 1.73602 * 125.83292 * 0.04478 * 16 15 14 18 18 N 1.38268 * 108.34159 * 180.02562 * 16 15 14 19 19 H 0.97002 * 125.88857 * 180.27018 * 18 16 15 20 20 C 1.37065 * 108.22158 * 359.97438 * 18 16 15 21 21 N 1.30877 * 126.09760 * 180.02562 * 20 18 16 22 22 N 1.37056 * 107.79337 * 0.02562 * 20 18 16 23 23 C 1.46503 * 126.16709 * 180.02562 * 22 20 18 24 24 H 1.08996 * 109.47279 * 59.99416 * 1 2 3 25 25 H 1.09000 * 109.46513 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47040 * 299.99398 * 1 2 3 27 27 H 0.97002 * 119.99418 * 179.97438 * 7 6 4 28 28 H 0.97001 * 120.00064 * 89.99617 * 12 2 1 29 29 H 1.08005 * 120.00534 * 0.02562 * 14 13 12 30 30 H 0.96994 * 120.00503 * 359.97438 * 21 20 18 31 31 H 1.09000 * 109.47175 * 90.02002 * 23 22 20 32 32 H 1.09004 * 109.46725 * 210.02169 * 23 22 20 33 33 H 1.09003 * 109.47167 * 330.01817 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7102 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2391 -2.4828 7 7 0.9435 0.8305 -2.6033 8 14 2.3214 -1.1200 -4.0080 9 1 1.8259 -2.5199 -4.0079 10 1 1.8270 -0.4195 -5.2205 11 1 3.8064 -1.1204 -4.0083 12 7 2.0184 -0.6906 1.1960 13 7 2.2520 0.0298 2.3747 14 6 2.6848 -0.5831 3.4360 15 6 2.9290 0.1719 4.6715 16 6 2.7467 1.4965 4.8397 17 17 2.1804 2.6060 3.6305 18 7 3.0872 1.8210 6.1399 19 1 3.0476 2.7065 6.5340 20 6 3.4841 0.6746 6.7778 21 7 3.8803 0.5821 8.0217 22 7 3.3919 -0.3573 5.8806 23 6 3.7185 -1.7615 6.1414 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 0.7094 1.1621 -3.4843 28 1 2.1801 -1.6468 1.1720 29 1 2.8649 -1.6477 3.4092 30 1 3.9119 1.3740 8.5809 31 1 2.8300 -2.2803 6.5014 32 1 4.0653 -2.2308 5.2207 33 1 4.5031 -1.8180 6.8960 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393449471.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:43 Heat of formation + Delta-G solvation = 111.295104 kcal Electronic energy + Delta-G solvation = -18029.034405 eV Core-core repulsion = 14960.329269 eV Total energy + Delta-G solvation = -3068.705136 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.089 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.49382 -36.66439 -36.40373 -34.65207 -34.01368 -33.12290 -31.35957 -28.99418 -27.46763 -25.92238 -25.23208 -23.17765 -21.04310 -20.36786 -19.82228 -18.02148 -16.96667 -16.02644 -15.83027 -15.55587 -15.13257 -15.02805 -14.56514 -13.88047 -13.38086 -13.10885 -12.68337 -12.50868 -12.32053 -11.86471 -11.53625 -11.09525 -11.05206 -10.96292 -10.74487 -10.32804 -10.27220 -10.02382 -9.77883 -9.70732 -9.51074 -9.06947 -8.55738 -7.54911 -6.61713 -6.17837 -4.26596 1.59972 1.90565 2.36701 2.75398 3.22927 3.27761 3.28454 3.33469 3.43365 4.01670 4.33954 4.87108 4.99275 5.14576 5.18686 5.34582 5.58840 5.64250 5.89759 5.92560 6.52549 6.76178 6.89188 6.95176 7.01513 7.09928 7.49516 7.52369 7.71635 7.79653 8.07281 8.22436 8.52271 8.79612 9.18570 9.40281 10.87858 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.032498 B = 0.004125 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.376649 B = 6785.605693 C = 7334.894108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.298 3.702 3 H 0.044 0.956 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.612 5.612 13 N -0.164 5.164 14 C -0.004 4.004 15 C 0.131 3.869 16 C 0.060 3.940 17 Cl 0.021 6.979 18 N -0.661 5.661 19 H 0.426 0.574 20 C 0.602 3.398 21 N -0.816 5.816 22 N -0.511 5.511 23 C 0.113 3.887 24 H 0.090 0.910 25 H 0.026 0.974 26 H 0.014 0.986 27 H 0.265 0.735 28 H 0.370 0.630 29 H 0.110 0.890 30 H 0.342 0.658 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.108 -0.327 14.320 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.196 3.804 3 H 0.062 0.938 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.349 5.349 13 N 0.020 4.980 14 C -0.211 4.211 15 C 0.023 3.977 16 C -0.078 4.078 17 Cl 0.049 6.951 18 N -0.296 5.296 19 H 0.266 0.734 20 C 0.239 3.761 21 N -0.470 5.470 22 N -0.219 5.219 23 C -0.029 4.029 24 H 0.109 0.891 25 H 0.045 0.955 26 H 0.033 0.967 27 H 0.075 0.925 28 H 0.206 0.794 29 H 0.127 0.873 30 H 0.160 0.840 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.964 -0.151 14.003 14.314 hybrid contribution 0.246 -0.137 -0.693 0.748 sum 3.210 -0.289 13.310 13.694 Atomic orbital electron populations 1.22206 0.98844 0.99274 1.00669 1.18583 0.90213 0.93660 0.77978 0.93802 1.21182 1.32469 1.13390 0.90156 0.92185 1.24847 0.94769 0.94973 0.98938 1.69880 1.35862 1.22424 1.24092 0.86483 0.79199 0.79598 0.81686 1.20153 1.21082 1.20156 1.49175 1.71272 1.07899 1.06533 1.74149 1.02953 1.27279 0.93621 1.22018 1.12378 0.96349 0.90400 1.17314 1.05281 0.88581 0.86553 1.20380 1.11898 0.90701 0.84831 1.98440 1.86759 1.60407 1.49511 1.43542 1.65345 1.10638 1.10040 0.73390 1.19303 0.90069 0.78942 0.87831 1.69891 1.41987 1.35147 0.99950 1.43815 1.62955 1.07396 1.07690 1.21676 1.01794 0.76644 1.02765 0.89133 0.95480 0.96709 0.92460 0.79396 0.87260 0.84024 0.91726 0.90173 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.29 37.16 0.35 -3.22 16 2 C 0.30 7.24 3.23 -69.08 -0.22 7.01 16 3 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.53 -13.77 8.74 -34.44 -0.30 -14.08 16 5 H 0.06 1.51 7.79 -52.48 -0.41 1.10 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -24.04 11.32 55.43 0.63 -23.41 16 8 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 10 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 12 N -0.61 -12.64 6.10 -5.88 -0.04 -12.67 16 13 N -0.16 -3.11 9.56 32.04 0.31 -2.80 16 14 C 0.00 -0.06 10.63 -14.86 -0.16 -0.22 16 15 C 0.13 1.93 6.86 -81.95 -0.56 1.37 16 16 C 0.06 0.86 7.80 -15.88 -0.12 0.74 16 17 Cl 0.02 0.31 27.45 -51.86 -1.42 -1.11 16 18 N -0.66 -7.99 6.22 -10.32 -0.06 -8.05 16 19 H 0.43 3.91 8.96 -40.82 -0.37 3.54 16 20 C 0.60 8.00 9.00 -320.63 -2.88 5.12 16 21 N -0.82 -10.77 14.00 30.07 0.42 -10.35 16 22 N -0.51 -6.70 3.27 -121.19 -0.40 -7.10 16 23 C 0.11 1.10 10.92 59.85 0.65 1.76 16 24 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.37 6.98 8.58 -182.59 -1.57 5.41 16 29 H 0.11 1.47 7.53 -52.48 -0.39 1.08 16 30 H 0.34 3.88 8.92 -40.82 -0.36 3.51 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.66 7.50 -51.93 -0.39 0.27 16 33 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 LS Contribution 304.87 15.07 4.59 4.59 Total: -1.00 -28.69 304.87 -9.39 -38.08 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.05 Total: 7.42 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -3.35 Total: 0.17 kcal Atomic # 7 Polarization: -65.24 SS G_CDS: 0.86 Total: -64.39 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -1.42 Total: -1.11 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.69 -9.39 -38.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393449471.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.377 kcal (2) G-P(sol) polarization free energy of solvation -28.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds