Wall clock time and date at job start Mon Mar 30 2020 04:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46949 * 2 1 4 4 C 1.50697 * 109.47139 * 240.00839 * 2 1 3 5 5 H 1.08007 * 119.99489 * 240.00075 * 4 2 1 6 6 C 1.37880 * 120.00568 * 59.99514 * 4 2 1 7 7 N 1.31520 * 119.99395 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00153 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47136 * 60.00042 * 8 6 4 10 10 H 1.48498 * 109.47059 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47119 * 299.99671 * 8 6 4 12 12 N 1.46494 * 109.47411 * 120.00372 * 2 1 3 13 13 N 1.40104 * 120.00049 * 270.00106 * 12 2 1 14 14 C 1.29976 * 119.99710 * 179.97438 * 13 12 2 15 15 C 1.46836 * 119.99822 * 180.02562 * 14 13 12 16 16 C 1.34767 * 126.00509 * 359.97438 * 15 14 13 17 17 Cl 1.73602 * 125.83292 * 0.04478 * 16 15 14 18 18 N 1.38268 * 108.34159 * 180.02562 * 16 15 14 19 19 H 0.97002 * 125.88857 * 180.27018 * 18 16 15 20 20 C 1.37065 * 108.22158 * 359.97438 * 18 16 15 21 21 N 1.30877 * 126.09760 * 180.02562 * 20 18 16 22 22 N 1.37056 * 107.79337 * 0.02562 * 20 18 16 23 23 C 1.46503 * 126.16709 * 180.02562 * 22 20 18 24 24 H 1.08996 * 109.47279 * 59.99416 * 1 2 3 25 25 H 1.09000 * 109.46513 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47040 * 299.99398 * 1 2 3 27 27 H 0.97002 * 119.99418 * 179.97438 * 7 6 4 28 28 H 0.97001 * 120.00064 * 89.99617 * 12 2 1 29 29 H 1.08005 * 120.00534 * 0.02562 * 14 13 12 30 30 H 0.96994 * 120.00503 * 359.97438 * 21 20 18 31 31 H 1.09000 * 109.47175 * 90.02002 * 23 22 20 32 32 H 1.09004 * 109.46725 * 210.02169 * 23 22 20 33 33 H 1.09003 * 109.47167 * 330.01817 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7102 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2391 -2.4828 7 7 0.9435 0.8305 -2.6033 8 14 2.3214 -1.1200 -4.0080 9 1 1.8259 -2.5199 -4.0079 10 1 1.8270 -0.4195 -5.2205 11 1 3.8064 -1.1204 -4.0083 12 7 2.0184 -0.6906 1.1960 13 7 2.2520 0.0298 2.3747 14 6 2.6848 -0.5831 3.4360 15 6 2.9290 0.1719 4.6715 16 6 2.7467 1.4965 4.8397 17 17 2.1804 2.6060 3.6305 18 7 3.0872 1.8210 6.1399 19 1 3.0476 2.7065 6.5340 20 6 3.4841 0.6746 6.7778 21 7 3.8803 0.5821 8.0217 22 7 3.3919 -0.3573 5.8806 23 6 3.7185 -1.7615 6.1414 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 0.7094 1.1621 -3.4843 28 1 2.1801 -1.6468 1.1720 29 1 2.8649 -1.6477 3.4092 30 1 3.9119 1.3740 8.5809 31 1 2.8300 -2.2803 6.5014 32 1 4.0653 -2.2308 5.2207 33 1 4.5031 -1.8180 6.8960 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393449471.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:42 Heat of formation + Delta-G solvation = 94.710804 kcal Electronic energy + Delta-G solvation = -18029.753554 eV Core-core repulsion = 14960.329269 eV Total energy + Delta-G solvation = -3069.424285 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.55608 -38.12532 -37.64460 -36.08948 -35.26675 -34.34145 -33.04752 -30.32783 -28.66629 -27.33447 -26.97590 -24.44746 -22.42962 -21.81253 -21.02503 -19.22182 -18.58233 -17.51391 -16.92026 -16.85218 -16.63322 -16.14083 -15.86022 -15.34295 -14.56518 -14.43316 -14.25117 -14.12272 -13.39023 -13.13725 -12.97557 -12.85769 -12.72179 -12.49920 -12.25495 -12.18440 -12.07539 -11.17342 -11.03475 -10.96738 -10.83314 -10.64282 -10.51963 -8.89142 -8.15523 -7.87284 -6.30122 0.36899 0.74024 1.37033 1.46867 1.47652 1.55374 1.71403 2.08446 2.10400 2.46024 2.85618 3.15866 3.83292 3.99735 4.12281 4.53800 4.63265 4.70988 4.79813 4.86157 4.95987 5.05640 5.18439 5.28087 5.56194 5.74424 5.85671 5.90848 6.00351 6.21217 6.43605 6.52705 6.88408 7.41115 7.54635 7.77013 8.90723 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.032498 B = 0.004125 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.376649 B = 6785.605693 C = 7334.894108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.310 3.690 3 H 0.005 0.995 4 C -0.546 4.546 5 H 0.064 0.936 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.966 3.034 9 H -0.268 1.268 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.628 5.628 13 N -0.206 5.206 14 C 0.035 3.965 15 C 0.111 3.889 16 C 0.067 3.933 17 Cl 0.011 6.989 18 N -0.649 5.649 19 H 0.438 0.562 20 C 0.595 3.405 21 N -0.821 5.821 22 N -0.510 5.510 23 C 0.105 3.895 24 H 0.066 0.934 25 H 0.030 0.970 26 H 0.019 0.981 27 H 0.266 0.734 28 H 0.377 0.623 29 H 0.137 0.863 30 H 0.351 0.649 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.894 -1.500 15.449 16.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.206 3.794 3 H 0.023 0.977 4 C -0.585 4.585 5 H 0.082 0.918 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.791 3.209 9 H -0.193 1.193 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.365 5.365 13 N -0.018 5.018 14 C -0.175 4.175 15 C 0.001 3.999 16 C -0.073 4.073 17 Cl 0.039 6.961 18 N -0.284 5.284 19 H 0.281 0.719 20 C 0.231 3.769 21 N -0.476 5.476 22 N -0.218 5.218 23 C -0.035 4.035 24 H 0.085 0.915 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.075 0.925 28 H 0.214 0.786 29 H 0.154 0.846 30 H 0.170 0.830 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.760 -1.327 15.175 15.690 hybrid contribution 0.076 0.265 -0.760 0.808 sum 3.836 -1.062 14.415 14.955 Atomic orbital electron populations 1.22021 0.98811 0.99114 0.99665 1.18105 0.90154 0.91762 0.79380 0.97721 1.21515 1.32413 1.13534 0.91081 0.91803 1.25654 0.94927 0.95612 1.01803 1.70014 1.36902 1.23705 1.24614 0.85487 0.78579 0.78717 0.78078 1.19268 1.21002 1.19856 1.48571 1.73597 1.07851 1.06502 1.74171 1.06049 1.27713 0.93916 1.22456 1.07770 0.97713 0.89542 1.17288 1.06700 0.88828 0.87039 1.20527 1.10720 0.90720 0.85304 1.98449 1.86825 1.60770 1.50063 1.43544 1.64516 1.11342 1.09039 0.71876 1.19447 0.90279 0.79186 0.88019 1.69878 1.41890 1.35899 0.99970 1.44038 1.62480 1.08445 1.06798 1.21946 1.02568 0.75125 1.03892 0.91494 0.95037 0.96196 0.92524 0.78575 0.84552 0.83015 0.90546 0.88503 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.59 9.29 71.98 0.67 -5.92 16 2 C 0.31 15.36 3.23 44.25 0.14 15.51 16 3 H 0.00 0.28 8.14 -2.38 -0.02 0.26 16 4 C -0.55 -28.45 8.74 25.60 0.22 -28.22 16 5 H 0.06 3.19 7.79 -2.91 -0.02 3.17 16 6 C 0.02 1.07 5.30 84.65 0.45 1.52 16 7 N -0.91 -50.57 11.32 21.45 0.24 -50.32 16 8 Si 0.97 41.41 29.54 68.60 2.03 43.44 16 9 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 10 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 12 N -0.63 -25.84 6.10 -172.52 -1.05 -26.90 16 13 N -0.21 -7.66 9.56 -52.54 -0.50 -8.17 16 14 C 0.03 1.02 10.63 87.22 0.93 1.95 16 15 C 0.11 3.03 6.86 39.31 0.27 3.30 16 16 C 0.07 1.82 7.80 82.88 0.65 2.47 16 17 Cl 0.01 0.32 27.45 -2.72 -0.07 0.25 16 18 N -0.65 -14.39 6.22 -186.55 -1.16 -15.55 16 19 H 0.44 7.19 8.96 -92.71 -0.83 6.36 16 20 C 0.59 14.41 9.00 260.72 2.35 16.76 16 21 N -0.82 -19.75 14.00 -58.78 -0.82 -20.58 16 22 N -0.51 -12.05 3.27 -537.33 -1.76 -13.81 16 23 C 0.10 1.74 10.92 127.77 1.40 3.13 16 24 H 0.07 3.53 6.07 -2.39 -0.01 3.52 16 25 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 28 H 0.38 13.96 8.58 -213.32 -1.83 12.13 16 29 H 0.14 3.24 7.53 -2.91 -0.02 3.22 16 30 H 0.35 7.18 8.92 -92.71 -0.83 6.35 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.10 1.27 7.50 -2.38 -0.02 1.25 16 33 H 0.09 1.48 8.10 -2.39 -0.02 1.46 16 Total: -1.00 -61.00 304.87 1.65 -59.34 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -2.31 Total: 21.81 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 7.07 Total: 10.49 kcal Atomic # 7 Polarization: -130.27 SS G_CDS: -5.05 Total: -135.32 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -0.07 Total: 0.25 kcal Total: -61.00 1.65 -59.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393449471.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.052 kcal (2) G-P(sol) polarization free energy of solvation -60.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds