Wall clock time and date at job start Mon Mar 30 2020 05:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86795 * 120.00506 * 2 1 4 4 H 1.48501 * 109.47265 * 270.00225 * 3 2 1 5 5 H 1.48506 * 109.46680 * 29.99990 * 3 2 1 6 6 H 1.48494 * 109.47482 * 149.99649 * 3 2 1 7 7 C 1.39949 * 119.99385 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99842 * 197.85052 * 7 2 1 9 9 C 1.41389 * 120.00418 * 17.85408 * 7 2 1 10 10 C 1.40724 * 120.24068 * 24.38176 * 9 7 2 11 11 C 1.37614 * 119.74138 * 180.29934 * 10 9 7 12 12 C 1.38644 * 120.24958 * 359.46750 * 11 10 9 13 13 C 1.50701 * 119.74985 * 180.26190 * 12 11 10 14 14 N 1.46502 * 109.46837 * 270.25276 * 13 12 11 15 15 N 1.39870 * 119.71936 * 269.72789 * 14 13 12 16 16 C 1.30331 * 121.01670 * 179.69939 * 15 14 13 17 17 C 1.41188 * 120.38976 * 0.57584 * 16 15 14 18 18 N 1.38363 * 120.30237 * 179.73042 * 17 16 15 19 19 C 1.38250 * 119.39845 * 359.70413 * 17 16 15 20 20 C 1.34762 * 119.71935 * 90.00087 * 14 13 12 21 21 O 1.22139 * 120.20076 * 359.97438 * 20 14 13 22 22 C 1.38627 * 120.50118 * 0.51164 * 12 11 10 23 23 C 1.37619 * 120.24541 * 359.77097 * 22 12 11 24 24 H 0.96998 * 119.99364 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.13014 * 0.02562 * 10 9 7 26 26 H 1.08002 * 119.87775 * 179.72611 * 11 10 9 27 27 H 1.09007 * 109.47230 * 30.24799 * 13 12 11 28 28 H 1.08993 * 109.47104 * 150.25328 * 13 12 11 29 29 H 1.07998 * 119.81041 * 180.28121 * 16 15 14 30 30 H 0.97001 * 120.00175 * 179.97438 * 18 17 16 31 31 H 0.97007 * 120.00065 * 359.97438 * 18 17 16 32 32 H 1.07996 * 120.48641 * 180.02562 * 19 17 16 33 33 H 1.08002 * 119.87772 * 179.74098 * 22 12 11 34 34 H 1.08008 * 120.12319 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4398 2.6526 0.7001 6 1 3.5398 1.4400 0.7001 7 6 2.0079 -1.2121 0.0005 8 1 3.0489 -1.2345 0.2873 9 6 1.3520 -2.4072 -0.3743 10 6 0.2206 -2.3626 -1.2100 11 6 -0.4136 -3.5317 -1.5634 12 6 0.0647 -4.7509 -1.1084 13 6 -0.6350 -6.0246 -1.5072 14 7 -1.6773 -6.3369 -0.5262 15 7 -1.3701 -7.1326 0.5823 16 6 -2.2762 -7.4213 1.4735 17 6 -3.5970 -6.9433 1.3300 18 7 -4.5588 -7.2555 2.2744 19 6 -3.9203 -6.1600 0.2377 20 6 -2.9252 -5.8597 -0.7024 21 8 -3.1872 -5.1692 -1.6753 22 6 1.1787 -4.8067 -0.2852 23 6 1.8253 -3.6499 0.0857 24 1 -0.4849 0.8401 -0.0004 25 1 -0.1512 -1.4143 -1.5690 26 1 -1.2847 -3.4997 -2.2011 27 1 -1.0879 -5.8978 -2.4906 28 1 0.0872 -6.8402 -1.5422 29 1 -2.0165 -8.0337 2.3244 30 1 -5.4648 -6.9245 2.1716 31 1 -4.3272 -7.8055 3.0392 32 1 -4.9250 -5.7847 0.1107 33 1 1.5402 -5.7616 0.0668 34 1 2.6928 -3.6957 0.7275 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398995665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:28 Heat of formation + Delta-G solvation = 43.322139 kcal Electronic energy + Delta-G solvation = -19750.845333 eV Core-core repulsion = 16649.332767 eV Total energy + Delta-G solvation = -3101.512566 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.52984 -37.68978 -37.14784 -35.63052 -33.95439 -32.41333 -30.32495 -29.77902 -29.18989 -26.91424 -24.63248 -23.60018 -22.31320 -20.90156 -20.00313 -18.52625 -17.26377 -17.16489 -17.02702 -15.72667 -15.64540 -15.21083 -14.87509 -14.05833 -13.68845 -13.59086 -13.40069 -13.05089 -12.74673 -12.51891 -11.88395 -11.81993 -11.62699 -11.46589 -11.10116 -10.97904 -10.75231 -10.61472 -10.38685 -9.69575 -9.44725 -9.33218 -9.09282 -8.42795 -8.01308 -7.40756 -7.31396 -6.75656 -4.35503 0.85799 2.14495 2.37075 2.89390 3.07611 3.11090 3.15125 3.30093 3.46914 3.88978 3.93178 4.47712 4.60954 4.75588 5.02121 5.69679 5.74083 5.82214 5.91198 6.02128 6.13886 6.28532 6.42043 6.54815 6.63001 6.98732 7.02627 7.08094 7.31483 7.33356 7.40405 7.66481 7.87725 8.04442 8.08245 8.19558 8.32349 8.50934 8.67517 8.90124 9.00011 10.18175 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.025832 B = 0.004555 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.657451 B = 6146.237931 C = 6348.601318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.461 4.461 8 H 0.078 0.922 9 C 0.118 3.882 10 C -0.173 4.173 11 C -0.073 4.073 12 C -0.246 4.246 13 C 0.186 3.814 14 N -0.402 5.402 15 N -0.181 5.181 16 C 0.030 3.970 17 C 0.231 3.769 18 N -0.850 5.850 19 C -0.305 4.305 20 C 0.520 3.480 21 O -0.550 6.550 22 C -0.065 4.065 23 C -0.234 4.234 24 H 0.281 0.719 25 H 0.117 0.883 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.184 0.816 30 H 0.405 0.595 31 H 0.403 0.597 32 H 0.146 0.854 33 H 0.089 0.911 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.521 -12.456 4.956 14.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.490 4.490 8 H 0.097 0.903 9 C 0.115 3.885 10 C -0.192 4.192 11 C -0.092 4.092 12 C -0.248 4.248 13 C 0.067 3.933 14 N -0.224 5.224 15 N 0.005 4.995 16 C -0.172 4.172 17 C 0.117 3.883 18 N -0.388 5.388 19 C -0.343 4.343 20 C 0.318 3.682 21 O -0.429 6.429 22 C -0.084 4.084 23 C -0.253 4.253 24 H 0.092 0.908 25 H 0.135 0.865 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.201 0.799 30 H 0.235 0.765 31 H 0.232 0.768 32 H 0.164 0.836 33 H 0.107 0.893 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.876 -12.010 4.070 13.976 hybrid contribution -0.896 0.941 0.750 1.500 sum -6.771 -11.069 4.820 13.842 Atomic orbital electron populations 1.69850 1.07653 1.29329 1.34387 1.25956 0.94711 1.01418 0.92236 0.86301 0.80456 0.80514 0.79388 1.19181 1.20308 1.18582 1.19651 0.98171 0.91323 1.39829 0.90341 1.17676 0.90894 0.92037 0.87905 1.21317 0.99538 0.96807 1.01544 1.20715 0.97544 0.92423 0.98472 1.19117 1.01608 0.92925 1.11183 1.20417 0.87460 0.96252 0.89133 1.50328 1.11130 1.41828 1.19076 1.74908 1.26750 1.03077 0.94759 1.23533 0.89053 1.04091 1.00477 1.18814 0.89402 0.91081 0.89019 1.42264 1.11799 1.58452 1.26275 1.21847 1.02183 1.11805 0.98436 1.16949 0.82089 0.81529 0.87621 1.90946 1.80490 1.39555 1.31923 1.20383 0.95097 0.96491 0.96448 1.20938 1.04090 0.92864 1.07427 0.90771 0.86498 0.88604 0.89032 0.90041 0.79936 0.76534 0.76834 0.83645 0.89291 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.13 10.95 55.55 0.61 -20.52 16 2 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 3 Si 0.91 19.02 29.59 -169.99 -5.03 13.99 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.46 -12.51 9.05 -37.74 -0.34 -12.86 16 8 H 0.08 2.04 7.91 -52.48 -0.41 1.62 16 9 C 0.12 3.24 5.58 -106.83 -0.60 2.65 16 10 C -0.17 -4.75 8.70 -38.87 -0.34 -5.09 16 11 C -0.07 -1.85 9.67 -39.66 -0.38 -2.23 16 12 C -0.25 -5.67 5.48 -104.33 -0.57 -6.24 16 13 C 0.19 3.60 5.80 -5.19 -0.03 3.57 16 14 N -0.40 -7.56 3.49 -64.78 -0.23 -7.79 16 15 N -0.18 -2.84 11.53 30.82 0.36 -2.49 16 16 C 0.03 0.34 11.20 -17.07 -0.19 0.15 16 17 C 0.23 2.67 6.78 -83.79 -0.57 2.10 16 18 N -0.85 -5.64 9.03 32.48 0.29 -5.35 16 19 C -0.31 -4.71 9.89 -38.86 -0.38 -5.10 16 20 C 0.52 10.30 7.47 -15.55 -0.12 10.18 16 21 O -0.55 -12.79 16.12 4.79 0.08 -12.71 16 22 C -0.07 -1.51 9.67 -39.66 -0.38 -1.89 16 23 C -0.23 -5.90 9.80 -38.87 -0.38 -6.28 16 24 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 25 H 0.12 3.33 6.16 -52.49 -0.32 3.01 16 26 H 0.10 2.43 7.49 -52.49 -0.39 2.04 16 27 H 0.09 1.77 7.35 -51.92 -0.38 1.39 16 28 H 0.08 1.37 8.08 -51.93 -0.42 0.95 16 29 H 0.18 1.26 8.06 -52.49 -0.42 0.83 16 30 H 0.41 2.16 8.83 -40.82 -0.36 1.80 16 31 H 0.40 1.50 8.84 -40.82 -0.36 1.14 16 32 H 0.15 2.03 8.06 -52.49 -0.42 1.60 16 33 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 LS Contribution 301.44 15.07 4.54 4.54 Total: -1.00 -33.60 301.44 -7.23 -40.84 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -3.48 Total: 8.68 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -4.37 Total: -19.19 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 1.03 Total: -36.15 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.08 Total: -12.71 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.60 -7.23 -40.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398995665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.158 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds