Wall clock time and date at job start Mon Mar 30 2020 05:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86795 * 120.00506 * 2 1 4 4 H 1.48501 * 109.47265 * 270.00225 * 3 2 1 5 5 H 1.48506 * 109.46680 * 29.99990 * 3 2 1 6 6 H 1.48494 * 109.47482 * 149.99649 * 3 2 1 7 7 C 1.39949 * 119.99385 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99842 * 197.85052 * 7 2 1 9 9 C 1.41389 * 120.00418 * 17.85408 * 7 2 1 10 10 C 1.40724 * 120.24068 * 24.38176 * 9 7 2 11 11 C 1.37614 * 119.74138 * 180.29934 * 10 9 7 12 12 C 1.38644 * 120.24958 * 359.46750 * 11 10 9 13 13 C 1.50701 * 119.74985 * 180.26190 * 12 11 10 14 14 N 1.46502 * 109.46837 * 270.25276 * 13 12 11 15 15 N 1.39870 * 119.71936 * 269.72789 * 14 13 12 16 16 C 1.30331 * 121.01670 * 179.69939 * 15 14 13 17 17 C 1.41188 * 120.38976 * 0.57584 * 16 15 14 18 18 N 1.38363 * 120.30237 * 179.73042 * 17 16 15 19 19 C 1.38250 * 119.39845 * 359.70413 * 17 16 15 20 20 C 1.34762 * 119.71935 * 90.00087 * 14 13 12 21 21 O 1.22139 * 120.20076 * 359.97438 * 20 14 13 22 22 C 1.38627 * 120.50118 * 0.51164 * 12 11 10 23 23 C 1.37619 * 120.24541 * 359.77097 * 22 12 11 24 24 H 0.96998 * 119.99364 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.13014 * 0.02562 * 10 9 7 26 26 H 1.08002 * 119.87775 * 179.72611 * 11 10 9 27 27 H 1.09007 * 109.47230 * 30.24799 * 13 12 11 28 28 H 1.08993 * 109.47104 * 150.25328 * 13 12 11 29 29 H 1.07998 * 119.81041 * 180.28121 * 16 15 14 30 30 H 0.97001 * 120.00175 * 179.97438 * 18 17 16 31 31 H 0.97007 * 120.00065 * 359.97438 * 18 17 16 32 32 H 1.07996 * 120.48641 * 180.02562 * 19 17 16 33 33 H 1.08002 * 119.87772 * 179.74098 * 22 12 11 34 34 H 1.08008 * 120.12319 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4398 2.6526 0.7001 6 1 3.5398 1.4400 0.7001 7 6 2.0079 -1.2121 0.0005 8 1 3.0489 -1.2345 0.2873 9 6 1.3520 -2.4072 -0.3743 10 6 0.2206 -2.3626 -1.2100 11 6 -0.4136 -3.5317 -1.5634 12 6 0.0647 -4.7509 -1.1084 13 6 -0.6350 -6.0246 -1.5072 14 7 -1.6773 -6.3369 -0.5262 15 7 -1.3701 -7.1326 0.5823 16 6 -2.2762 -7.4213 1.4735 17 6 -3.5970 -6.9433 1.3300 18 7 -4.5588 -7.2555 2.2744 19 6 -3.9203 -6.1600 0.2377 20 6 -2.9252 -5.8597 -0.7024 21 8 -3.1872 -5.1692 -1.6753 22 6 1.1787 -4.8067 -0.2852 23 6 1.8253 -3.6499 0.0857 24 1 -0.4849 0.8401 -0.0004 25 1 -0.1512 -1.4143 -1.5690 26 1 -1.2847 -3.4997 -2.2011 27 1 -1.0879 -5.8978 -2.4906 28 1 0.0872 -6.8402 -1.5422 29 1 -2.0165 -8.0337 2.3244 30 1 -5.4648 -6.9245 2.1716 31 1 -4.3272 -7.8055 3.0392 32 1 -4.9250 -5.7847 0.1107 33 1 1.5402 -5.7616 0.0668 34 1 2.6928 -3.6957 0.7275 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398995665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:28 Heat of formation + Delta-G solvation = 19.099875 kcal Electronic energy + Delta-G solvation = -19751.895689 eV Core-core repulsion = 16649.332767 eV Total energy + Delta-G solvation = -3102.562922 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.79461 -39.48091 -38.51892 -36.86952 -35.73419 -33.86959 -31.82154 -31.26315 -31.06766 -28.56809 -26.07693 -25.06535 -23.61156 -22.85255 -21.85089 -19.62381 -19.24815 -18.38790 -18.10458 -17.31721 -16.91045 -16.61494 -16.14330 -15.74666 -15.50852 -15.43699 -14.72860 -14.34165 -14.10705 -13.94919 -13.81158 -13.56772 -13.26950 -12.97599 -12.78745 -12.64405 -12.36823 -12.09132 -12.03447 -11.54443 -11.29689 -11.08358 -10.80017 -9.76428 -9.40597 -9.29122 -9.05691 -8.68065 -6.39311 -0.25012 0.74836 1.01988 1.12391 1.33012 1.36912 1.50379 1.63179 2.17982 2.60041 2.67663 2.71310 3.47064 3.60732 3.72590 4.06247 4.29490 4.30284 4.51415 4.62641 4.65230 4.74634 4.94621 5.02350 5.11671 5.19759 5.24744 5.34107 5.42113 5.67533 5.90861 6.06586 6.16498 6.20991 6.33169 6.66328 6.74764 6.85231 6.88906 6.99463 7.16136 8.28880 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.025832 B = 0.004555 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.657451 B = 6146.237931 C = 6348.601318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.032 3.968 3 Si 0.988 3.012 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.252 1.252 7 C -0.497 4.497 8 H 0.082 0.918 9 C 0.087 3.913 10 C -0.198 4.198 11 C -0.084 4.084 12 C -0.233 4.233 13 C 0.192 3.808 14 N -0.421 5.421 15 N -0.208 5.208 16 C 0.057 3.943 17 C 0.267 3.733 18 N -0.812 5.812 19 C -0.354 4.354 20 C 0.502 3.498 21 O -0.610 6.610 22 C -0.059 4.059 23 C -0.244 4.244 24 H 0.288 0.712 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.244 0.756 30 H 0.417 0.583 31 H 0.425 0.575 32 H 0.149 0.851 33 H 0.126 0.874 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.421 -14.780 7.852 17.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.183 4.183 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.176 1.176 7 C -0.526 4.526 8 H 0.100 0.900 9 C 0.084 3.916 10 C -0.218 4.218 11 C -0.103 4.103 12 C -0.235 4.235 13 C 0.073 3.927 14 N -0.240 5.240 15 N -0.021 5.021 16 C -0.145 4.145 17 C 0.147 3.853 18 N -0.350 5.350 19 C -0.391 4.391 20 C 0.304 3.696 21 O -0.495 6.495 22 C -0.078 4.078 23 C -0.264 4.264 24 H 0.098 0.902 25 H 0.112 0.888 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.130 0.870 29 H 0.260 0.740 30 H 0.249 0.751 31 H 0.258 0.742 32 H 0.167 0.833 33 H 0.144 0.856 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.803 -14.392 7.037 17.039 hybrid contribution -1.124 1.341 0.081 1.752 sum -6.927 -13.051 7.118 16.400 Atomic orbital electron populations 1.69928 1.09420 1.30652 1.35298 1.26905 0.95414 1.04993 0.91003 0.85130 0.79145 0.75412 0.79566 1.18751 1.19242 1.17561 1.19928 0.98566 0.92401 1.41694 0.89979 1.18005 0.91374 0.93564 0.88642 1.21228 1.00849 0.96551 1.03161 1.20773 0.97315 0.93313 0.98878 1.19501 1.01217 0.93550 1.09281 1.20224 0.88097 0.95245 0.89184 1.49971 1.10302 1.43325 1.20403 1.74952 1.28101 1.04117 0.94889 1.24622 0.88137 1.01670 1.00039 1.18744 0.90249 0.88317 0.87999 1.42329 1.11449 1.56226 1.24994 1.21660 1.01683 1.15690 1.00073 1.17585 0.83120 0.81094 0.87818 1.90890 1.81493 1.42639 1.34466 1.20693 0.94270 0.97335 0.95476 1.21200 1.04696 0.92850 1.07646 0.90170 0.88801 0.89738 0.90212 0.86988 0.74017 0.75142 0.74184 0.83298 0.85592 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.41 10.95 21.83 0.24 -46.17 16 2 C 0.03 1.68 5.14 85.26 0.44 2.12 16 3 Si 0.99 39.69 29.59 68.60 2.03 41.72 16 4 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 7 C -0.50 -27.93 9.05 23.46 0.21 -27.72 16 8 H 0.08 4.37 7.91 -2.91 -0.02 4.35 16 9 C 0.09 4.97 5.58 -21.29 -0.12 4.85 16 10 C -0.20 -11.62 8.70 22.73 0.20 -11.42 16 11 C -0.08 -4.53 9.67 22.22 0.21 -4.31 16 12 C -0.23 -10.90 5.48 -19.67 -0.11 -11.01 16 13 C 0.19 7.46 5.80 85.63 0.50 7.96 16 14 N -0.42 -15.62 3.49 -476.89 -1.66 -17.29 16 15 N -0.21 -5.91 11.53 -56.41 -0.65 -6.56 16 16 C 0.06 1.05 11.20 85.64 0.96 2.01 16 17 C 0.27 5.11 6.78 38.84 0.26 5.37 16 18 N -0.81 -6.38 9.03 -51.15 -0.46 -6.84 16 19 C -0.35 -10.67 9.89 22.74 0.22 -10.45 16 20 C 0.50 20.43 7.47 84.71 0.63 21.07 16 21 O -0.61 -30.35 16.12 -5.77 -0.09 -30.44 16 22 C -0.06 -2.68 9.67 22.22 0.21 -2.46 16 23 C -0.24 -12.43 9.80 22.73 0.22 -12.21 16 24 H 0.29 14.62 8.30 -92.71 -0.77 13.85 16 25 H 0.09 5.80 6.16 -2.91 -0.02 5.79 16 26 H 0.08 4.66 7.49 -2.91 -0.02 4.64 16 27 H 0.08 3.23 7.35 -2.38 -0.02 3.22 16 28 H 0.11 3.57 8.08 -2.39 -0.02 3.55 16 29 H 0.24 1.42 8.06 -2.91 -0.02 1.39 16 30 H 0.42 2.44 8.83 -92.71 -0.82 1.62 16 31 H 0.42 0.26 8.84 -92.70 -0.82 -0.56 16 32 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 33 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 34 H 0.10 4.93 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -80.99 301.44 2.77 -78.21 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -0.48 Total: 23.57 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 3.85 Total: -36.20 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -2.54 Total: -76.86 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.09 Total: -30.44 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -80.99 2.77 -78.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398995665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.313 kcal (2) G-P(sol) polarization free energy of solvation -80.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds