Wall clock time and date at job start Mon Mar 30 2020 05:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 119.99895 * 2 1 4 4 H 1.48498 * 109.46821 * 270.00284 * 3 2 1 5 5 H 1.48501 * 109.47257 * 29.99856 * 3 2 1 6 6 H 1.48498 * 109.47318 * 150.00210 * 3 2 1 7 7 C 1.39941 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99869 * 197.84807 * 7 2 1 9 9 C 1.41399 * 120.00319 * 17.84028 * 7 2 1 10 10 C 1.40712 * 120.24577 * 204.38609 * 9 7 2 11 11 C 1.37615 * 119.74605 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24435 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.74557 * 179.97438 * 12 11 10 14 14 N 1.46498 * 109.46990 * 90.00597 * 13 12 11 15 15 N 1.40730 * 120.37604 * 94.99658 * 14 13 12 16 16 H 0.97004 * 121.36503 * 334.65516 * 15 14 13 17 17 C 1.39124 * 117.27199 * 154.66753 * 15 14 13 18 18 N 1.30258 * 121.68784 * 217.36215 * 17 15 14 19 19 C 1.48522 * 116.62484 * 37.38518 * 17 15 14 20 20 C 1.35021 * 117.47757 * 335.45884 * 19 17 15 21 21 C 1.34944 * 120.37349 * 274.72187 * 14 13 12 22 22 O 1.21600 * 119.84273 * 0.03802 * 21 14 13 23 23 C 1.38631 * 120.50645 * 0.26133 * 12 11 10 24 24 C 1.37622 * 120.24099 * 359.44149 * 23 12 11 25 25 H 0.96994 * 119.99970 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.12732 * 0.04354 * 10 9 7 27 27 H 1.08000 * 119.87918 * 180.02562 * 11 10 9 28 28 H 1.09001 * 109.47229 * 210.00062 * 13 12 11 29 29 H 1.08996 * 109.47414 * 330.00379 * 13 12 11 30 30 H 0.97000 * 119.99695 * 180.02562 * 18 17 15 31 31 H 1.08004 * 121.26059 * 155.48378 * 19 17 15 32 32 H 1.08002 * 120.36312 * 179.91487 * 20 19 17 33 33 H 1.07998 * 119.87837 * 179.69772 * 23 12 11 34 34 H 1.08002 * 120.12182 * 180.28267 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4896 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2346 0.2861 9 6 1.3520 -2.4069 -0.3762 10 6 1.8258 -3.6499 0.0825 11 6 1.1798 -4.8065 -0.2899 12 6 0.0666 -4.7502 -1.1143 13 6 -0.6318 -6.0239 -1.5156 14 7 -1.6749 -6.3382 -0.5362 15 7 -3.0052 -5.9370 -0.7597 16 1 -3.2150 -5.1755 -1.3228 17 6 -4.0070 -6.6769 -0.1396 18 7 -5.1418 -6.9220 -0.7303 19 6 -3.7173 -7.1729 1.2300 20 6 -2.4213 -7.3329 1.5735 21 6 -1.3721 -7.0207 0.5879 22 8 -0.2269 -7.3764 0.7898 23 6 -0.4054 -3.5316 -1.5770 24 6 0.2212 -2.3619 -1.2124 25 1 -0.4850 0.8400 0.0004 26 1 2.6930 -3.6960 0.7247 27 1 1.5414 -5.7617 0.0613 28 1 -1.0838 -5.8960 -2.4992 29 1 0.0909 -6.8390 -1.5510 30 1 -5.8235 -7.4405 -0.2749 31 1 -4.5131 -7.3974 1.9248 32 1 -2.1576 -7.6896 2.5583 33 1 -1.2706 -3.4999 -2.2227 34 1 -0.1509 -1.4133 -1.5704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399016756.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:31 Heat of formation + Delta-G solvation = 70.626107 kcal Electronic energy + Delta-G solvation = -19784.387194 eV Core-core repulsion = 16684.058617 eV Total energy + Delta-G solvation = -3100.328577 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.22984 -37.62843 -37.26960 -34.99717 -33.71258 -32.54216 -31.15901 -29.53620 -29.11675 -26.89797 -24.39132 -23.42093 -22.18717 -21.02604 -20.07866 -18.48658 -17.70202 -17.37237 -17.03751 -15.69126 -15.32050 -15.14221 -14.97345 -14.12607 -13.92287 -13.74693 -13.55963 -13.18234 -12.59203 -12.43583 -12.00717 -11.80979 -11.66114 -11.14807 -11.13220 -10.94871 -10.52762 -10.26502 -9.93199 -9.73286 -9.64469 -9.43079 -9.33439 -9.20516 -7.65887 -7.53911 -7.39862 -6.85732 -4.44466 0.72460 1.80834 2.42817 2.71873 3.01878 3.04827 3.05981 3.14095 3.37414 3.68635 3.86406 4.37206 4.52765 4.71965 5.27442 5.50434 5.58972 5.69616 5.76403 5.79123 5.87661 6.03569 6.24912 6.45259 6.51514 6.89237 6.99404 7.21932 7.29450 7.51394 7.55528 7.65524 7.78571 7.98258 8.01724 8.05932 8.23467 8.43293 8.55913 8.81087 8.89454 10.08187 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.027111 B = 0.004559 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.531489 B = 6140.190136 C = 6541.822623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.118 3.882 10 C -0.231 4.231 11 C -0.057 4.057 12 C -0.252 4.252 13 C 0.183 3.817 14 N -0.382 5.382 15 N -0.525 5.525 16 H 0.435 0.565 17 C 0.441 3.559 18 N -0.731 5.731 19 C -0.140 4.140 20 C -0.128 4.128 21 C 0.529 3.471 22 O -0.525 6.525 23 C -0.083 4.083 24 C -0.171 4.171 25 H 0.282 0.718 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.353 0.647 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.084 0.916 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.127 -8.350 0.455 10.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.098 0.902 9 C 0.115 3.885 10 C -0.251 4.251 11 C -0.076 4.076 12 C -0.255 4.255 13 C 0.065 3.935 14 N -0.204 5.204 15 N -0.267 5.267 16 H 0.280 0.720 17 C 0.159 3.841 18 N -0.361 5.361 19 C -0.166 4.166 20 C -0.153 4.153 21 C 0.318 3.682 22 O -0.400 6.400 23 C -0.102 4.102 24 C -0.190 4.190 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.116 0.884 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.170 0.830 31 H 0.170 0.830 32 H 0.172 0.828 33 H 0.102 0.898 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.965 -8.211 -0.341 10.773 hybrid contribution -0.054 0.858 0.930 1.266 sum -7.019 -7.353 0.589 10.182 Atomic orbital electron populations 1.69828 1.07664 1.29388 1.34430 1.25950 0.94740 1.01466 0.92118 0.86285 0.80540 0.80372 0.79419 1.19160 1.20253 1.18513 1.19690 0.98258 0.91301 1.39443 0.90245 1.17680 0.90820 0.92065 0.87920 1.21006 1.04111 0.92832 1.07163 1.20551 0.94552 0.97014 0.95515 1.19157 1.02157 0.92729 1.11420 1.20531 0.86779 0.97181 0.89006 1.48359 0.97176 1.53762 1.21120 1.43542 0.92999 1.33382 1.56753 0.71965 1.20308 0.88472 0.88627 0.86702 1.69141 1.05140 1.23626 1.38175 1.24222 0.97935 0.98420 0.95981 1.23921 0.92677 0.98490 1.00205 1.18529 0.89087 0.79838 0.80754 1.90830 1.20646 1.53890 1.74624 1.20482 0.97955 0.92706 0.99070 1.21268 0.99679 0.96645 1.01412 0.90752 0.88956 0.88412 0.90260 0.88936 0.82958 0.82979 0.82754 0.89785 0.86442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.94 10.95 55.55 0.61 -19.33 16 2 C 0.08 1.86 5.14 -17.34 -0.09 1.78 16 3 Si 0.91 18.29 29.60 -169.99 -5.03 13.26 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.46 -11.98 9.05 -37.74 -0.34 -12.32 16 8 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 9 C 0.12 3.10 5.57 -106.83 -0.60 2.51 16 10 C -0.23 -5.73 9.80 -38.88 -0.38 -6.11 16 11 C -0.06 -1.31 9.37 -39.66 -0.37 -1.68 16 12 C -0.25 -5.27 5.45 -104.33 -0.57 -5.84 16 13 C 0.18 3.12 5.80 -5.19 -0.03 3.09 16 14 N -0.38 -6.25 3.45 -62.56 -0.22 -6.47 16 15 N -0.53 -7.55 6.59 32.84 0.22 -7.33 16 16 H 0.44 5.94 8.96 -182.11 -1.63 4.31 16 17 C 0.44 5.63 7.92 -152.78 -1.21 4.42 16 18 N -0.73 -9.04 14.13 32.90 0.46 -8.57 16 19 C -0.14 -1.49 10.34 -36.48 -0.38 -1.86 16 20 C -0.13 -1.61 10.24 -37.04 -0.38 -1.99 16 21 C 0.53 8.97 7.58 -12.50 -0.09 8.88 16 22 O -0.52 -10.41 15.64 5.28 0.08 -10.33 16 23 C -0.08 -1.82 9.67 -39.66 -0.38 -2.20 16 24 C -0.17 -4.29 8.70 -38.87 -0.34 -4.63 16 25 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 26 H 0.09 2.19 8.06 -52.48 -0.42 1.77 16 27 H 0.10 2.15 7.21 -52.49 -0.38 1.77 16 28 H 0.08 1.17 8.08 -51.93 -0.42 0.75 16 29 H 0.09 1.56 7.53 -51.93 -0.39 1.17 16 30 H 0.35 3.44 8.81 -40.82 -0.36 3.08 16 31 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 32 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.08 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.12 3.05 6.16 -52.49 -0.32 2.73 16 LS Contribution 301.50 15.07 4.54 4.54 Total: -1.00 -29.50 301.50 -9.24 -38.73 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -4.74 Total: 11.47 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -5.16 Total: -15.97 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 1.07 Total: -41.70 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.50 -9.24 -38.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399016756.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.360 kcal (2) G-P(sol) polarization free energy of solvation -29.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds