Wall clock time and date at job start Mon Mar 30 2020 05:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46955 * 79.19483 * 3 2 1 5 5 C 1.36940 * 119.99283 * 97.99796 * 4 3 2 6 6 H 1.07999 * 119.99732 * 155.59802 * 5 4 3 7 7 C 1.38808 * 120.00399 * 335.60320 * 5 4 3 8 8 N 1.31620 * 120.00091 * 351.07691 * 7 5 4 9 9 Si 1.86798 * 120.00294 * 171.08244 * 7 5 4 10 10 H 1.48497 * 109.47490 * 89.99521 * 9 7 5 11 11 H 1.48500 * 109.47287 * 209.99890 * 9 7 5 12 12 H 1.48511 * 109.46955 * 329.99675 * 9 7 5 13 13 C 1.46498 * 120.00235 * 277.99696 * 4 3 2 14 14 C 1.52992 * 109.47051 * 90.00043 * 13 4 3 15 15 H 1.08998 * 109.47389 * 305.00399 * 14 13 4 16 16 O 1.42904 * 109.47019 * 64.99789 * 14 13 4 17 17 C 1.50701 * 109.47418 * 184.99640 * 14 13 4 18 18 C 1.38382 * 119.92509 * 279.73233 * 17 14 13 19 19 C 1.38343 * 120.30537 * 179.76154 * 18 17 14 20 20 C 1.37968 * 120.14887 * 0.50561 * 19 18 17 21 21 C 1.39615 * 119.84577 * 359.75042 * 20 19 18 22 22 C 1.43198 * 120.14818 * 179.97438 * 21 20 19 23 23 N 7.66754 * 82.42223 * 8.29723 * 2 1 3 24 24 C 1.37923 * 119.92392 * 100.00000 * 17 14 13 25 25 H 1.09006 * 109.47438 * 319.20089 * 3 2 1 26 26 H 1.08998 * 109.47102 * 199.19909 * 3 2 1 27 27 H 0.97001 * 120.00469 * 180.02562 * 8 7 5 28 28 H 1.09007 * 109.46826 * 210.00298 * 13 4 3 29 29 H 1.08998 * 109.46981 * 329.99791 * 13 4 3 30 30 H 0.96703 * 113.99674 * 60.00158 * 16 14 13 31 31 H 1.08001 * 119.85123 * 359.97438 * 18 17 14 32 32 H 1.08004 * 119.92556 * 180.25445 * 19 18 17 33 33 H 1.08004 * 120.07782 * 179.72139 * 20 19 18 34 34 H 1.08003 * 120.07667 * 0.02562 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0964 -0.2581 -1.3568 5 6 3.4797 0.7851 -2.1569 6 1 4.1819 0.6195 -2.9606 7 6 2.9659 2.0553 -1.9350 8 7 1.9836 2.2270 -1.0760 9 14 3.6683 3.5210 -2.8556 10 1 2.9227 3.7117 -4.1256 11 1 3.5388 4.7402 -2.0178 12 1 5.1021 3.2764 -3.1554 13 6 3.1748 -1.6326 -1.8575 14 6 1.8553 -2.0038 -2.5370 15 1 1.0307 -1.8403 -1.8433 16 8 1.6709 -1.1890 -3.6965 17 6 1.8901 -3.4547 -2.9431 18 6 2.5473 -3.8319 -4.1009 19 6 2.5883 -5.1622 -4.4785 20 6 1.9644 -6.1210 -3.7073 21 6 1.2950 -5.7467 -2.5406 22 6 0.6447 -6.7364 -1.7356 23 7 0.1249 -7.5210 -1.0968 24 6 1.2621 -4.4028 -2.1627 25 1 2.9718 -0.7772 0.6715 26 1 2.9709 0.9713 0.3379 27 1 1.6242 3.1146 -0.9211 28 1 3.9892 -1.7110 -2.5778 29 1 3.3589 -2.3123 -1.0255 30 1 2.3694 -1.2834 -4.3586 31 1 3.0334 -3.0849 -4.7109 32 1 3.1065 -5.4503 -5.3813 33 1 1.9933 -7.1587 -4.0055 34 1 0.7454 -4.1064 -1.2618 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402190639.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:59 Heat of formation + Delta-G solvation = 58.928003 kcal Electronic energy + Delta-G solvation = -19811.154194 eV Core-core repulsion = 16710.318349 eV Total energy + Delta-G solvation = -3100.835845 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.82964 -37.44363 -36.38206 -35.52830 -34.13718 -31.96424 -31.36278 -31.16313 -28.10907 -26.70008 -24.33991 -23.65282 -21.97153 -20.94640 -18.53981 -17.50165 -16.61342 -16.20700 -15.89670 -15.71341 -14.93103 -14.45813 -14.14174 -14.06578 -13.73608 -13.59823 -13.25239 -13.19228 -12.74506 -12.49544 -12.16247 -11.87494 -11.63175 -11.56973 -11.38214 -11.29422 -10.95156 -10.71546 -10.62056 -10.24342 -10.13271 -9.95036 -9.57396 -9.07096 -8.92852 -8.68183 -7.11096 -5.95377 -3.42256 0.68021 1.21231 2.54809 2.85101 3.32683 3.38155 3.40815 3.75183 3.77490 4.09618 4.35551 4.47349 4.66967 4.73958 4.93419 5.00096 5.17932 5.28786 5.33351 5.46707 5.57224 5.67093 5.79284 5.83391 5.89895 6.13417 6.15196 6.25264 6.34026 6.58120 6.66970 6.76835 7.06195 7.36769 7.61174 8.13504 8.26897 8.94732 9.18117 9.57875 10.02822 11.12928 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.025288 B = 0.005054 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.958769 B = 5538.594567 C = 6288.748525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C 0.249 3.751 3 C 0.255 3.745 4 N -0.572 5.572 5 C -0.253 4.253 6 H 0.077 0.923 7 C 0.009 3.991 8 N -0.907 5.907 9 Si 0.912 3.088 10 H -0.287 1.287 11 H -0.290 1.290 12 H -0.279 1.279 13 C 0.120 3.880 14 C 0.117 3.883 15 H 0.100 0.900 16 O -0.529 6.529 17 C -0.102 4.102 18 C -0.083 4.083 19 C -0.118 4.118 20 C -0.081 4.081 21 C -0.031 4.031 22 C 0.259 3.741 23 N -0.426 5.426 24 C -0.063 4.063 25 H 0.054 0.946 26 H 0.120 0.880 27 H 0.259 0.741 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.361 0.639 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.445 -11.881 -5.126 14.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.069 4.069 3 C 0.126 3.874 4 N -0.291 5.291 5 C -0.382 4.382 6 H 0.094 0.906 7 C -0.190 4.190 8 N -0.551 5.551 9 Si 0.742 3.258 10 H -0.214 1.214 11 H -0.217 1.217 12 H -0.204 1.204 13 C -0.007 4.007 14 C 0.055 3.945 15 H 0.117 0.883 16 O -0.332 6.332 17 C -0.103 4.103 18 C -0.102 4.102 19 C -0.136 4.136 20 C -0.102 4.102 21 C -0.035 4.035 22 C -0.056 4.056 23 N -0.101 5.101 24 C -0.084 4.084 25 H 0.072 0.928 26 H 0.138 0.862 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.207 0.793 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.390 -12.710 -3.744 13.676 hybrid contribution 1.099 1.039 -1.172 1.913 sum 4.489 -11.671 -4.915 13.436 Atomic orbital electron populations 1.80844 1.14446 1.13166 1.10561 1.30516 0.96364 0.89262 0.90793 1.18393 0.80365 1.02206 0.86452 1.44021 1.73111 1.01272 1.10701 1.19141 1.19758 0.86579 1.12751 0.90557 1.25047 0.96187 0.98836 0.98890 1.69753 1.25673 1.22322 1.37309 0.86145 0.78428 0.81999 0.79201 1.21400 1.21655 1.20421 1.21754 0.94161 0.87369 0.97463 1.21880 1.01999 0.82226 0.88441 0.88256 1.86783 1.50319 1.66265 1.29830 1.20993 0.96375 0.98127 0.94826 1.21205 0.96975 0.96254 0.95739 1.21036 0.99912 0.92640 0.99968 1.21090 0.96129 1.00045 0.92916 1.15971 1.02265 0.89894 0.95351 1.25837 0.93309 0.93139 0.93287 1.81293 1.09510 1.10055 1.09253 1.21075 0.97324 0.90430 0.99592 0.92799 0.86218 0.93001 0.92157 0.92736 0.79325 0.85218 0.85035 0.85347 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.73 18.54 42.16 0.78 -11.94 16 2 C 0.25 5.72 12.33 -20.76 -0.26 5.47 16 3 C 0.26 5.16 5.43 -6.83 -0.04 5.13 16 4 N -0.57 -11.76 2.49 -176.57 -0.44 -12.20 16 5 C -0.25 -5.86 9.17 -15.06 -0.14 -6.00 16 6 H 0.08 1.70 7.84 -52.49 -0.41 1.29 16 7 C 0.01 0.22 5.12 -17.43 -0.09 0.14 16 8 N -0.91 -24.00 9.16 55.49 0.51 -23.49 16 9 Si 0.91 20.09 29.56 -169.99 -5.03 15.07 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 13 C 0.12 1.95 5.34 -4.05 -0.02 1.93 16 14 C 0.12 1.92 3.34 -27.89 -0.09 1.82 16 15 H 0.10 1.95 6.74 -51.93 -0.35 1.60 16 16 O -0.53 -9.70 12.66 -35.23 -0.45 -10.14 16 17 C -0.10 -1.29 4.97 -104.68 -0.52 -1.81 16 18 C -0.08 -0.84 9.32 -39.49 -0.37 -1.21 16 19 C -0.12 -0.99 10.03 -39.64 -0.40 -1.39 16 20 C -0.08 -0.73 9.76 -39.17 -0.38 -1.11 16 21 C -0.03 -0.35 5.73 -106.93 -0.61 -0.96 16 22 C 0.26 3.28 15.34 -22.43 -0.34 2.94 16 23 N -0.43 -6.26 18.55 41.89 0.78 -5.48 16 24 C -0.06 -0.78 9.37 -39.17 -0.37 -1.15 16 25 H 0.05 0.87 8.01 -51.93 -0.42 0.46 16 26 H 0.12 2.64 6.41 -51.93 -0.33 2.30 16 27 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 28 H 0.06 0.89 8.04 -51.93 -0.42 0.48 16 29 H 0.05 0.78 7.97 -51.93 -0.41 0.36 16 30 H 0.36 5.09 7.49 45.56 0.34 5.43 16 31 H 0.13 1.11 6.76 -52.49 -0.35 0.75 16 32 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 33 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 34 H 0.13 1.63 8.03 -52.48 -0.42 1.20 16 LS Contribution 309.22 15.07 4.66 4.66 Total: -1.00 -30.73 309.22 -5.57 -36.30 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -2.76 Total: 3.46 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -3.63 Total: 3.78 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 1.63 Total: -53.12 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -0.45 Total: -10.14 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.73 -5.57 -36.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402190639.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.228 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds