Wall clock time and date at job start Mon Mar 30 2020 05:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46955 * 79.19483 * 3 2 1 5 5 C 1.36940 * 119.99283 * 97.99796 * 4 3 2 6 6 H 1.07999 * 119.99732 * 155.59802 * 5 4 3 7 7 C 1.38808 * 120.00399 * 335.60320 * 5 4 3 8 8 N 1.31620 * 120.00091 * 351.07691 * 7 5 4 9 9 Si 1.86798 * 120.00294 * 171.08244 * 7 5 4 10 10 H 1.48497 * 109.47490 * 89.99521 * 9 7 5 11 11 H 1.48500 * 109.47287 * 209.99890 * 9 7 5 12 12 H 1.48511 * 109.46955 * 329.99675 * 9 7 5 13 13 C 1.46498 * 120.00235 * 277.99696 * 4 3 2 14 14 C 1.52992 * 109.47051 * 90.00043 * 13 4 3 15 15 H 1.08998 * 109.47389 * 305.00399 * 14 13 4 16 16 O 1.42904 * 109.47019 * 64.99789 * 14 13 4 17 17 C 1.50701 * 109.47418 * 184.99640 * 14 13 4 18 18 C 1.38382 * 119.92509 * 279.73233 * 17 14 13 19 19 C 1.38343 * 120.30537 * 179.76154 * 18 17 14 20 20 C 1.37968 * 120.14887 * 0.50561 * 19 18 17 21 21 C 1.39615 * 119.84577 * 359.75042 * 20 19 18 22 22 C 1.43198 * 120.14818 * 179.97438 * 21 20 19 23 23 N 7.66754 * 82.42223 * 8.29723 * 2 1 3 24 24 C 1.37923 * 119.92392 * 100.00000 * 17 14 13 25 25 H 1.09006 * 109.47438 * 319.20089 * 3 2 1 26 26 H 1.08998 * 109.47102 * 199.19909 * 3 2 1 27 27 H 0.97001 * 120.00469 * 180.02562 * 8 7 5 28 28 H 1.09007 * 109.46826 * 210.00298 * 13 4 3 29 29 H 1.08998 * 109.46981 * 329.99791 * 13 4 3 30 30 H 0.96703 * 113.99674 * 60.00158 * 16 14 13 31 31 H 1.08001 * 119.85123 * 359.97438 * 18 17 14 32 32 H 1.08004 * 119.92556 * 180.25445 * 19 18 17 33 33 H 1.08004 * 120.07782 * 179.72139 * 20 19 18 34 34 H 1.08003 * 120.07667 * 0.02562 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0964 -0.2581 -1.3568 5 6 3.4797 0.7851 -2.1569 6 1 4.1819 0.6195 -2.9606 7 6 2.9659 2.0553 -1.9350 8 7 1.9836 2.2270 -1.0760 9 14 3.6683 3.5210 -2.8556 10 1 2.9227 3.7117 -4.1256 11 1 3.5388 4.7402 -2.0178 12 1 5.1021 3.2764 -3.1554 13 6 3.1748 -1.6326 -1.8575 14 6 1.8553 -2.0038 -2.5370 15 1 1.0307 -1.8403 -1.8433 16 8 1.6709 -1.1890 -3.6965 17 6 1.8901 -3.4547 -2.9431 18 6 2.5473 -3.8319 -4.1009 19 6 2.5883 -5.1622 -4.4785 20 6 1.9644 -6.1210 -3.7073 21 6 1.2950 -5.7467 -2.5406 22 6 0.6447 -6.7364 -1.7356 23 7 0.1249 -7.5210 -1.0968 24 6 1.2621 -4.4028 -2.1627 25 1 2.9718 -0.7772 0.6715 26 1 2.9709 0.9713 0.3379 27 1 1.6242 3.1146 -0.9211 28 1 3.9892 -1.7110 -2.5778 29 1 3.3589 -2.3123 -1.0255 30 1 2.3694 -1.2834 -4.3586 31 1 3.0334 -3.0849 -4.7109 32 1 3.1065 -5.4503 -5.3813 33 1 1.9933 -7.1587 -4.0055 34 1 0.7454 -4.1064 -1.2618 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402190639.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:58 Heat of formation + Delta-G solvation = 39.387395 kcal Electronic energy + Delta-G solvation = -19812.001539 eV Core-core repulsion = 16710.318349 eV Total energy + Delta-G solvation = -3101.683189 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.76791 -38.75976 -37.60488 -36.95871 -35.91524 -33.38540 -32.48927 -32.20399 -29.50253 -28.33146 -25.56079 -24.70741 -23.12904 -22.23281 -19.54660 -19.23747 -17.87082 -17.55465 -17.08150 -16.82273 -16.45248 -15.63093 -15.45336 -15.24209 -15.07101 -14.81892 -14.58104 -14.15706 -13.97617 -13.79206 -13.55380 -13.34870 -13.11169 -13.02597 -12.71451 -12.62803 -12.39781 -12.27870 -11.96703 -11.92006 -11.74070 -11.61619 -10.95075 -10.53411 -9.88705 -9.76861 -8.79971 -7.80581 -5.25290 -0.16904 0.39080 1.55559 1.57097 1.59962 1.66540 1.92495 2.35669 2.57072 2.67654 2.83273 2.90309 3.43592 3.60211 3.82830 3.94083 3.98191 4.08054 4.19378 4.34110 4.36718 4.57370 4.65501 4.81740 4.98908 5.01812 5.04239 5.25427 5.35443 5.39910 5.44284 5.65030 5.77256 5.92070 6.38834 6.39741 7.09125 7.18116 7.39296 7.85941 8.27237 9.25976 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.025288 B = 0.005054 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.958769 B = 5538.594567 C = 6288.748525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C 0.264 3.736 3 C 0.253 3.747 4 N -0.585 5.585 5 C -0.234 4.234 6 H 0.090 0.910 7 C -0.047 4.047 8 N -0.939 5.939 9 Si 0.964 3.036 10 H -0.301 1.301 11 H -0.306 1.306 12 H -0.260 1.260 13 C 0.119 3.881 14 C 0.127 3.873 15 H 0.058 0.942 16 O -0.560 6.560 17 C -0.115 4.115 18 C -0.076 4.076 19 C -0.105 4.105 20 C -0.065 4.065 21 C -0.041 4.041 22 C 0.279 3.721 23 N -0.468 5.468 24 C -0.073 4.073 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.243 0.757 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.378 0.622 31 H 0.150 0.850 32 H 0.171 0.829 33 H 0.157 0.843 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.851 -13.974 -7.144 18.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.238 5.238 2 C -0.054 4.054 3 C 0.123 3.877 4 N -0.304 5.304 5 C -0.364 4.364 6 H 0.108 0.892 7 C -0.241 4.241 8 N -0.587 5.587 9 Si 0.795 3.205 10 H -0.229 1.229 11 H -0.233 1.233 12 H -0.185 1.185 13 C -0.007 4.007 14 C 0.065 3.935 15 H 0.076 0.924 16 O -0.366 6.366 17 C -0.116 4.116 18 C -0.095 4.095 19 C -0.123 4.123 20 C -0.085 4.085 21 C -0.045 4.045 22 C -0.035 4.035 23 N -0.144 5.144 24 C -0.094 4.094 25 H 0.119 0.881 26 H 0.120 0.880 27 H 0.053 0.947 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.226 0.774 31 H 0.167 0.833 32 H 0.188 0.812 33 H 0.174 0.826 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.840 -14.850 -5.787 16.974 hybrid contribution 0.410 1.564 -0.637 1.738 sum 6.250 -13.286 -6.424 16.026 Atomic orbital electron populations 1.80825 1.15987 1.14838 1.12172 1.31214 0.96978 0.87808 0.89382 1.18636 0.78587 1.02959 0.87521 1.44222 1.72751 1.02564 1.10834 1.19508 1.18234 0.86916 1.11700 0.89248 1.25615 0.97135 1.01062 1.00314 1.69929 1.27750 1.21303 1.39675 0.85314 0.78612 0.79434 0.77175 1.22935 1.23330 1.18456 1.21936 0.94685 0.85239 0.98832 1.21490 1.00214 0.84449 0.87350 0.92401 1.86730 1.51752 1.67273 1.30877 1.20554 0.98788 0.95676 0.96631 1.21476 0.95772 0.97783 0.94438 1.21430 0.98846 0.91366 1.00663 1.21482 0.93990 1.01757 0.91295 1.15991 1.03361 0.88813 0.96323 1.26064 0.92360 0.92570 0.92507 1.81311 1.11038 1.11561 1.10513 1.20977 0.97759 0.91173 0.99504 0.88063 0.88017 0.94708 0.89949 0.90409 0.77370 0.83278 0.81204 0.82582 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 -28.72 18.54 20.01 0.37 -28.35 16 2 C 0.26 12.34 12.33 89.44 1.10 13.44 16 3 C 0.25 10.06 5.43 84.57 0.46 10.52 16 4 N -0.58 -23.15 2.49 -712.56 -1.77 -24.93 16 5 C -0.23 -10.47 9.17 84.03 0.77 -9.70 16 6 H 0.09 3.73 7.84 -2.91 -0.02 3.70 16 7 C -0.05 -2.32 5.12 84.86 0.43 -1.89 16 8 N -0.94 -50.96 9.16 21.65 0.20 -50.77 16 9 Si 0.96 41.50 29.56 68.60 2.03 43.53 16 10 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 11 H -0.31 -13.81 7.11 99.48 0.71 -13.11 16 12 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 13 C 0.12 3.56 5.34 86.38 0.46 4.02 16 14 C 0.13 4.02 3.34 29.85 0.10 4.12 16 15 H 0.06 2.32 6.74 -2.39 -0.02 2.31 16 16 O -0.56 -19.93 12.66 -148.98 -1.89 -21.82 16 17 C -0.12 -2.69 4.97 -19.90 -0.10 -2.79 16 18 C -0.08 -1.24 9.32 22.33 0.21 -1.03 16 19 C -0.11 -1.22 10.03 22.23 0.22 -1.00 16 20 C -0.06 -0.89 9.76 22.54 0.22 -0.67 16 21 C -0.04 -0.83 5.73 -21.36 -0.12 -0.95 16 22 C 0.28 6.74 15.34 88.32 1.35 8.10 16 23 N -0.47 -13.54 18.55 19.02 0.35 -13.18 16 24 C -0.07 -1.72 9.37 22.54 0.21 -1.51 16 25 H 0.10 3.05 8.01 -2.38 -0.02 3.03 16 26 H 0.10 4.50 6.41 -2.39 -0.02 4.49 16 27 H 0.24 13.58 8.31 -92.71 -0.77 12.81 16 28 H 0.08 2.12 8.04 -2.38 -0.02 2.10 16 29 H 0.08 1.98 7.97 -2.39 -0.02 1.96 16 30 H 0.38 9.79 7.49 -74.06 -0.55 9.23 16 31 H 0.15 1.83 6.76 -2.91 -0.02 1.81 16 32 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 33 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 34 H 0.12 2.99 8.03 -2.91 -0.02 2.97 16 Total: -1.00 -69.04 309.22 5.21 -63.83 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.59 Total: 11.02 kcal Atomic # 6 Polarization: 15.35 SS G_CDS: 5.32 Total: 20.67 kcal Atomic # 7 Polarization: -116.38 SS G_CDS: -0.85 Total: -117.23 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -1.89 Total: -21.82 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -69.04 5.21 -63.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402190639.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.219 kcal (2) G-P(sol) polarization free energy of solvation -69.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds