Wall clock time and date at job start Mon Mar 30 2020 04:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 H 1.09001 * 109.82164 * 359.30331 * 3 2 1 5 5 O 1.43230 * 109.83344 * 238.41644 * 3 2 1 6 6 C 1.43832 * 109.86569 * 242.22050 * 5 3 2 7 7 C 1.54937 * 105.14519 * 335.50159 * 6 5 3 8 8 C 1.54381 * 109.82934 * 120.18337 * 3 2 1 9 9 H 1.08998 * 110.84970 * 22.68851 * 8 3 2 10 10 C 1.52999 * 110.84968 * 259.26641 * 8 3 2 11 11 N 1.46503 * 109.46940 * 175.00262 * 10 8 3 12 12 C 1.34781 * 119.99527 * 180.02562 * 11 10 8 13 13 O 1.21283 * 120.00065 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99611 * 179.97438 * 12 11 10 15 15 S 1.80999 * 109.47105 * 179.97438 * 14 12 11 16 16 C 1.76193 * 100.00201 * 179.97438 * 15 14 12 17 17 H 1.08005 * 120.00030 * 0.02562 * 16 15 14 18 18 C 1.38795 * 120.00196 * 180.02562 * 16 15 14 19 19 N 1.31635 * 120.00265 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00029 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47198 * 89.99953 * 20 18 16 22 22 H 1.48496 * 109.47156 * 209.99817 * 20 18 16 23 23 H 1.48506 * 109.46975 * 329.99902 * 20 18 16 24 24 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 25 25 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 26 26 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 27 27 H 1.08999 * 110.26298 * 216.60011 * 6 5 3 28 28 H 1.09006 * 110.34323 * 94.44107 * 6 5 3 29 29 H 1.09001 * 111.12770 * 278.57713 * 7 6 5 30 30 H 1.09005 * 111.16523 * 154.42428 * 7 6 5 31 31 H 1.09005 * 109.47321 * 295.00034 * 10 8 3 32 32 H 1.09001 * 109.47077 * 55.00326 * 10 8 3 33 33 H 0.96993 * 120.00279 * 0.02562 * 11 10 8 34 34 H 1.08996 * 109.46934 * 299.99446 * 14 12 11 35 35 H 1.09001 * 109.47091 * 59.99804 * 14 12 11 36 36 H 0.96991 * 120.00363 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3604 2.1379 -0.0125 5 8 2.9176 1.3731 -1.1478 6 6 4.2915 1.4561 -0.7304 7 6 4.2454 2.0580 0.6966 8 6 2.9577 1.3935 1.2554 9 1 3.1732 0.4002 1.6489 10 6 2.3074 2.2715 2.3264 11 7 3.1205 2.2386 3.5446 12 6 2.7390 2.9429 4.6286 13 8 1.7228 3.6041 4.5954 14 6 3.5751 2.9086 5.8820 15 16 2.8059 3.9474 7.1490 16 6 3.9572 3.7285 8.4646 17 1 4.8217 3.0961 8.3261 18 6 3.7532 4.3687 9.6791 19 7 4.6136 4.2055 10.6619 20 14 2.2576 5.4619 9.9190 21 1 1.1292 4.6495 10.4406 22 1 2.5820 6.5387 10.8888 23 1 1.8727 6.0665 8.6184 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5400 -0.9354 -0.0045 26 1 1.8500 -0.9353 -0.0004 27 1 4.8504 2.1106 -1.3993 28 1 4.7414 0.4635 -0.7080 29 1 4.1445 3.1428 0.6623 30 1 5.1214 1.7654 1.2756 31 1 2.2386 3.2970 1.9631 32 1 1.3080 1.8962 2.5464 33 1 3.9334 1.7101 3.5711 34 1 3.6437 1.8832 6.2450 35 1 4.5745 3.2840 5.6624 36 1 4.4709 4.6526 11.5107 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424932243.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:13 Heat of formation + Delta-G solvation = -70.710652 kcal Electronic energy + Delta-G solvation = -17969.275453 eV Core-core repulsion = 14965.969254 eV Total energy + Delta-G solvation = -3003.306199 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.28874 -39.06979 -35.25943 -34.15142 -32.46124 -32.30524 -29.91627 -28.75795 -25.72567 -25.29285 -23.00504 -21.20209 -20.74613 -20.04153 -17.94454 -17.06084 -16.74640 -16.21620 -15.71000 -15.46955 -15.11910 -14.95323 -14.29758 -14.10831 -13.85493 -13.55852 -13.26722 -12.85851 -12.80835 -12.24150 -12.09326 -11.86088 -11.52454 -11.37174 -11.27707 -11.19465 -11.02060 -10.62803 -10.02955 -9.87253 -9.72909 -9.54456 -9.05859 -8.99913 -8.52203 -6.93911 -6.30609 -4.02607 1.84445 2.72850 2.93699 3.26227 3.32454 3.49360 3.60884 3.62885 4.05835 4.22607 4.31640 4.39948 4.69021 4.72997 4.80336 4.87132 4.93415 4.99132 5.08508 5.25561 5.34593 5.38068 5.43549 5.51685 5.60909 5.66707 5.74111 5.85724 5.98232 6.23874 6.37174 6.45332 6.62623 7.55010 7.92460 8.39703 8.44479 9.15577 10.78661 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.039327 B = 0.003286 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.814161 B = 8518.918475 C = 8888.983688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.169 4.169 3 C 0.116 3.884 4 H 0.088 0.912 5 O -0.373 6.373 6 C 0.049 3.951 7 C -0.153 4.153 8 C -0.127 4.127 9 H 0.095 0.905 10 C 0.133 3.867 11 N -0.736 5.736 12 C 0.530 3.470 13 O -0.519 6.519 14 C -0.124 4.124 15 S -0.141 6.141 16 C -0.522 4.522 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.881 5.881 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.112 0.888 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.399 0.601 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.616 -8.208 -22.185 23.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.187 4.187 3 C 0.058 3.942 4 H 0.106 0.894 5 O -0.292 6.292 6 C -0.027 4.027 7 C -0.191 4.191 8 C -0.145 4.145 9 H 0.113 0.887 10 C 0.009 3.991 11 N -0.390 5.390 12 C 0.316 3.684 13 O -0.393 6.393 14 C -0.275 4.275 15 S 0.085 5.915 16 C -0.670 4.670 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 H 0.118 0.882 25 H 0.120 0.880 26 H 0.130 0.870 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.233 0.767 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.336 -7.051 -22.266 23.593 hybrid contribution 1.213 -0.715 0.694 1.570 sum -2.123 -7.766 -21.572 23.025 Atomic orbital electron populations 1.23922 0.95783 1.02366 0.98680 1.23152 0.96184 0.98150 1.01233 1.21751 0.92122 0.95778 0.84529 0.89383 1.88534 1.16090 1.95026 1.29543 1.23430 0.83813 1.00314 0.95180 1.23400 0.97867 1.01675 0.96135 1.22983 0.95415 1.00659 0.95488 0.88681 1.21185 0.94735 0.99624 0.83534 1.45921 1.28492 1.51679 1.12953 1.20292 0.85732 0.78406 0.83931 1.90706 1.25180 1.40461 1.82971 1.23277 1.02521 1.05570 0.96109 1.84798 1.36795 1.61227 1.08699 1.22315 1.11247 1.35493 0.97902 0.89391 1.24714 0.96488 0.95514 0.94583 1.69935 1.35583 1.42450 1.03749 0.86733 0.83041 0.81279 0.80788 1.19184 1.19918 1.15911 0.88182 0.87969 0.87047 0.89477 0.92068 0.89708 0.89439 0.91154 0.91131 0.76690 0.88488 0.88446 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 14.32 29.02 0.42 -0.90 16 2 C -0.17 -1.40 9.02 -36.02 -0.32 -1.73 16 3 C 0.12 1.02 3.50 -27.16 -0.09 0.92 16 4 H 0.09 0.78 7.48 -51.93 -0.39 0.39 16 5 O -0.37 -3.71 11.01 -35.23 -0.39 -4.10 16 6 C 0.05 0.35 7.78 38.18 0.30 0.65 16 7 C -0.15 -1.07 6.56 -24.48 -0.16 -1.23 16 8 C -0.13 -1.00 2.51 -88.67 -0.22 -1.22 16 9 H 0.09 0.68 7.84 -51.93 -0.41 0.28 16 10 C 0.13 1.41 4.98 -4.04 -0.02 1.39 16 11 N -0.74 -8.82 5.49 -60.29 -0.33 -9.15 16 12 C 0.53 9.17 7.85 -10.98 -0.09 9.08 16 13 O -0.52 -11.05 15.86 5.56 0.09 -10.96 16 14 C -0.12 -2.35 6.16 36.01 0.22 -2.13 16 15 S -0.14 -3.56 18.55 -107.50 -1.99 -5.56 16 16 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 17 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 18 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 19 N -0.88 -26.50 13.97 55.49 0.78 -25.72 16 20 Si 0.86 21.71 27.74 -169.99 -4.72 16.99 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.24 -5.95 6.74 56.52 0.38 -5.56 16 24 H 0.10 0.73 7.84 -52.49 -0.41 0.32 16 25 H 0.10 0.66 8.06 -52.48 -0.42 0.24 16 26 H 0.11 0.85 8.06 -52.49 -0.42 0.42 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.65 7.94 -51.93 -0.41 0.23 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.80 8.00 -51.93 -0.42 0.39 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.40 3.62 8.47 -40.82 -0.35 3.27 16 34 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 35 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 36 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 320.68 15.07 4.83 4.83 Total: -1.00 -33.99 320.68 -6.83 -40.82 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.34 Total: -0.05 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 0.24 Total: -7.11 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.44 Total: -34.87 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.30 Total: -15.06 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.72 Total: 16.99 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.99 -6.83 -40.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424932243.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.892 kcal (2) G-P(sol) polarization free energy of solvation -33.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds