Wall clock time and date at job start Mon Mar 30 2020 04:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 H 1.09001 * 109.82164 * 359.30331 * 3 2 1 5 5 O 1.43230 * 109.83344 * 238.41644 * 3 2 1 6 6 C 1.43832 * 109.86569 * 242.22050 * 5 3 2 7 7 C 1.54937 * 105.14519 * 335.50159 * 6 5 3 8 8 C 1.54381 * 109.82934 * 120.18337 * 3 2 1 9 9 H 1.08998 * 110.84970 * 22.68851 * 8 3 2 10 10 C 1.52999 * 110.84968 * 259.26641 * 8 3 2 11 11 N 1.46503 * 109.46940 * 175.00262 * 10 8 3 12 12 C 1.34781 * 119.99527 * 180.02562 * 11 10 8 13 13 O 1.21283 * 120.00065 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99611 * 179.97438 * 12 11 10 15 15 S 1.80999 * 109.47105 * 179.97438 * 14 12 11 16 16 C 1.76193 * 100.00201 * 179.97438 * 15 14 12 17 17 H 1.08005 * 120.00030 * 0.02562 * 16 15 14 18 18 C 1.38795 * 120.00196 * 180.02562 * 16 15 14 19 19 N 1.31635 * 120.00265 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00029 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47198 * 89.99953 * 20 18 16 22 22 H 1.48496 * 109.47156 * 209.99817 * 20 18 16 23 23 H 1.48506 * 109.46975 * 329.99902 * 20 18 16 24 24 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 25 25 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 26 26 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 27 27 H 1.08999 * 110.26298 * 216.60011 * 6 5 3 28 28 H 1.09006 * 110.34323 * 94.44107 * 6 5 3 29 29 H 1.09001 * 111.12770 * 278.57713 * 7 6 5 30 30 H 1.09005 * 111.16523 * 154.42428 * 7 6 5 31 31 H 1.09005 * 109.47321 * 295.00034 * 10 8 3 32 32 H 1.09001 * 109.47077 * 55.00326 * 10 8 3 33 33 H 0.96993 * 120.00279 * 0.02562 * 11 10 8 34 34 H 1.08996 * 109.46934 * 299.99446 * 14 12 11 35 35 H 1.09001 * 109.47091 * 59.99804 * 14 12 11 36 36 H 0.96991 * 120.00363 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3604 2.1379 -0.0125 5 8 2.9176 1.3731 -1.1478 6 6 4.2915 1.4561 -0.7304 7 6 4.2454 2.0580 0.6966 8 6 2.9577 1.3935 1.2554 9 1 3.1732 0.4002 1.6489 10 6 2.3074 2.2715 2.3264 11 7 3.1205 2.2386 3.5446 12 6 2.7390 2.9429 4.6286 13 8 1.7228 3.6041 4.5954 14 6 3.5751 2.9086 5.8820 15 16 2.8059 3.9474 7.1490 16 6 3.9572 3.7285 8.4646 17 1 4.8217 3.0961 8.3261 18 6 3.7532 4.3687 9.6791 19 7 4.6136 4.2055 10.6619 20 14 2.2576 5.4619 9.9190 21 1 1.1292 4.6495 10.4406 22 1 2.5820 6.5387 10.8888 23 1 1.8727 6.0665 8.6184 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5400 -0.9354 -0.0045 26 1 1.8500 -0.9353 -0.0004 27 1 4.8504 2.1106 -1.3993 28 1 4.7414 0.4635 -0.7080 29 1 4.1445 3.1428 0.6623 30 1 5.1214 1.7654 1.2756 31 1 2.2386 3.2970 1.9631 32 1 1.3080 1.8962 2.5464 33 1 3.9334 1.7101 3.5711 34 1 3.6437 1.8832 6.2450 35 1 4.5745 3.2840 5.6624 36 1 4.4709 4.6526 11.5107 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424932243.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:13 Heat of formation + Delta-G solvation = -94.939948 kcal Electronic energy + Delta-G solvation = -17970.326114 eV Core-core repulsion = 14965.969254 eV Total energy + Delta-G solvation = -3004.356860 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.10888 -40.25804 -36.31017 -34.79448 -34.67198 -33.23617 -31.09183 -29.61619 -27.87242 -26.27038 -23.59664 -21.98829 -21.84912 -20.80492 -19.88777 -17.98918 -17.85261 -17.14366 -17.12183 -16.72435 -16.64497 -15.85063 -15.65529 -15.17537 -14.95132 -14.79881 -14.60815 -14.15392 -13.81089 -13.35328 -13.34552 -13.01261 -12.87905 -12.65246 -12.57140 -12.12777 -12.05152 -11.86213 -11.79246 -11.17156 -11.06056 -10.62821 -10.53336 -10.31935 -10.17406 -8.99705 -8.51698 -6.22480 0.98954 1.23962 1.31621 1.46995 1.55393 1.55912 2.19094 2.25716 2.71372 2.86731 3.01791 3.41244 3.56287 3.70190 3.93639 4.09243 4.17940 4.24005 4.25755 4.29508 4.38835 4.47610 4.66330 4.71739 4.85324 4.87685 4.95691 5.04540 5.20273 5.36848 5.64251 5.70708 5.77403 6.01488 6.11483 6.44590 6.93719 7.17606 8.60730 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.039327 B = 0.003286 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.814161 B = 8518.918475 C = 8888.983688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.179 4.179 3 C 0.114 3.886 4 H 0.081 0.919 5 O -0.395 6.395 6 C 0.045 3.955 7 C -0.150 4.150 8 C -0.115 4.115 9 H 0.110 0.890 10 C 0.135 3.865 11 N -0.708 5.708 12 C 0.535 3.465 13 O -0.564 6.564 14 C -0.111 4.111 15 S -0.178 6.178 16 C -0.528 4.528 17 H 0.063 0.937 18 C 0.046 3.954 19 N -0.918 5.918 20 Si 0.914 3.086 21 H -0.262 1.262 22 H -0.259 1.259 23 H -0.237 1.237 24 H 0.099 0.901 25 H 0.114 0.886 26 H 0.120 0.880 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.418 0.582 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.542 -8.907 -23.466 25.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.198 4.198 3 C 0.056 3.944 4 H 0.098 0.902 5 O -0.315 6.315 6 C -0.031 4.031 7 C -0.187 4.187 8 C -0.134 4.134 9 H 0.128 0.872 10 C 0.012 3.988 11 N -0.363 5.363 12 C 0.321 3.679 13 O -0.442 6.442 14 C -0.262 4.262 15 S 0.049 5.951 16 C -0.676 4.676 17 H 0.081 0.919 18 C -0.160 4.160 19 N -0.556 5.556 20 Si 0.736 3.264 21 H -0.187 1.187 22 H -0.184 1.184 23 H -0.161 1.161 24 H 0.117 0.883 25 H 0.133 0.867 26 H 0.138 0.862 27 H 0.114 0.886 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.255 0.745 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.221 -7.786 -23.579 25.039 hybrid contribution 1.256 -0.601 0.942 1.681 sum -1.965 -8.387 -22.636 24.220 Atomic orbital electron populations 1.24096 0.95852 1.03007 0.98011 1.23240 0.96443 0.98228 1.01858 1.21749 0.92137 0.95885 0.84602 0.90160 1.88513 1.17423 1.95166 1.30357 1.23594 0.82776 1.01320 0.95410 1.23411 0.97943 1.01147 0.96243 1.22878 0.95498 1.00769 0.94218 0.87227 1.21243 0.94473 0.99877 0.83248 1.45652 1.28841 1.49901 1.11867 1.19967 0.84877 0.78652 0.84449 1.90698 1.27005 1.42781 1.83719 1.23270 1.02983 1.05038 0.94903 1.84740 1.37005 1.63547 1.09819 1.22465 1.11113 1.34705 0.99327 0.91858 1.25560 0.99109 0.96857 0.94451 1.70012 1.37341 1.43748 1.04469 0.85872 0.79776 0.79946 0.80816 1.18703 1.18376 1.16055 0.88252 0.86740 0.86246 0.88635 0.90800 0.90460 0.87527 0.91937 0.91911 0.74515 0.86725 0.86618 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 14.32 67.79 0.97 -1.46 16 2 C -0.18 -2.69 9.02 25.65 0.23 -2.46 16 3 C 0.11 1.83 3.50 30.32 0.11 1.94 16 4 H 0.08 1.37 7.48 -2.39 -0.02 1.36 16 5 O -0.39 -7.26 11.01 -148.98 -1.64 -8.90 16 6 C 0.04 0.55 7.78 72.64 0.57 1.11 16 7 C -0.15 -1.69 6.56 32.05 0.21 -1.48 16 8 C -0.11 -1.53 2.51 -9.53 -0.02 -1.56 16 9 H 0.11 1.20 7.84 -2.39 -0.02 1.18 16 10 C 0.14 2.61 4.98 86.38 0.43 3.04 16 11 N -0.71 -15.17 5.49 -463.04 -2.54 -17.71 16 12 C 0.54 17.56 7.85 87.66 0.69 18.25 16 13 O -0.56 -23.57 15.86 -3.04 -0.05 -23.62 16 14 C -0.11 -4.01 6.16 71.24 0.44 -3.57 16 15 S -0.18 -8.85 18.55 -56.49 -1.05 -9.90 16 16 C -0.53 -30.44 10.04 67.95 0.68 -29.76 16 17 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 18 C 0.05 2.66 5.50 84.86 0.47 3.13 16 19 N -0.92 -55.59 13.97 21.65 0.30 -55.29 16 20 Si 0.91 44.74 27.74 68.60 1.90 46.64 16 21 H -0.26 -12.53 7.11 99.48 0.71 -11.83 16 22 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.24 -11.56 6.74 99.48 0.67 -10.89 16 24 H 0.10 1.38 7.84 -2.91 -0.02 1.35 16 25 H 0.11 1.29 8.06 -2.91 -0.02 1.27 16 26 H 0.12 1.57 8.06 -2.91 -0.02 1.54 16 27 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.08 1.01 7.94 -2.39 -0.02 1.00 16 30 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.06 1.35 8.00 -2.38 -0.02 1.33 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.42 6.06 8.47 -92.71 -0.79 5.27 16 34 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 35 H 0.12 3.78 8.14 -2.40 -0.02 3.76 16 36 H 0.28 15.51 8.31 -92.72 -0.77 14.74 16 Total: -1.00 -73.32 320.68 1.94 -71.38 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.24 Total: 10.23 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 4.77 Total: -12.83 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -2.24 Total: -73.00 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -1.69 Total: -32.52 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.90 Total: 46.64 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.05 Total: -9.90 kcal Total: -73.32 1.94 -71.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424932243.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.559 kcal (2) G-P(sol) polarization free energy of solvation -73.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds