Wall clock time and date at job start Mon Mar 30 2020 04:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00013 * 2 1 4 4 H 1.48493 * 109.47137 * 269.99793 * 3 2 1 5 5 H 1.48503 * 109.47141 * 30.00175 * 3 2 1 6 6 H 1.48504 * 109.47081 * 149.99731 * 3 2 1 7 7 C 1.37876 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00203 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00353 * 359.97438 * 7 2 1 10 10 O 1.42894 * 113.38067 * 313.08362 * 9 7 2 11 11 C 1.53509 * 114.17134 * 180.02562 * 9 7 2 12 12 N 1.47485 * 87.93114 * 220.32976 * 11 9 7 13 13 C 1.37846 * 110.99929 * 138.70092 * 12 11 9 14 14 N 1.32647 * 120.91199 * 0.02562 * 13 12 11 15 15 C 1.32334 * 121.48510 * 180.02562 * 14 13 12 16 16 N 1.31200 * 122.97806 * 359.95305 * 15 14 13 17 17 C 1.34115 * 120.46623 * 0.02562 * 16 15 14 18 18 C 1.40151 * 122.00740 * 180.02562 * 17 16 15 19 19 C 1.36312 * 119.58397 * 179.97438 * 18 17 16 20 20 C 1.39215 * 121.03428 * 0.02562 * 19 18 17 21 21 C 1.36375 * 120.89425 * 359.97438 * 20 19 18 22 22 C 1.39928 * 119.50438 * 359.97438 * 21 20 19 23 23 C 1.47487 * 87.83326 * 27.01153 * 12 11 9 24 24 H 0.96990 * 119.99778 * 0.02562 * 1 2 3 25 25 H 0.96700 * 114.00464 * 46.91609 * 10 9 7 26 26 H 1.08995 * 113.47313 * 105.56804 * 11 9 7 27 27 H 1.09000 * 113.47831 * 335.09673 * 11 9 7 28 28 H 1.07995 * 118.51061 * 179.97438 * 15 14 13 29 29 H 1.08004 * 120.20605 * 0.02562 * 18 17 16 30 30 H 1.08004 * 119.48284 * 180.28309 * 19 18 17 31 31 H 1.08005 * 119.54940 * 179.97438 * 20 19 18 32 32 H 1.08002 * 120.24873 * 179.97438 * 21 20 19 33 33 H 1.09003 * 113.47356 * 87.75736 * 23 12 11 34 34 H 1.09004 * 113.47305 * 218.22078 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 8 0.1921 -2.5417 0.9601 11 6 2.1497 -3.7438 0.0028 12 7 1.2076 -4.3592 -0.9505 13 6 1.8817 -5.0431 -1.9395 14 7 3.2073 -5.0896 -1.9535 15 6 3.8660 -5.7423 -2.8976 16 7 3.2672 -6.3824 -3.8739 17 6 1.9287 -6.4001 -3.9551 18 6 1.2557 -7.0739 -4.9834 19 6 -0.1069 -7.0601 -5.0180 20 6 -0.8427 -6.3861 -4.0472 21 6 -0.2196 -5.7204 -3.0330 22 6 1.1781 -5.7159 -2.9679 23 6 0.8556 -2.9978 -1.3953 24 1 -0.4849 0.8400 -0.0004 25 1 -0.3724 -1.7566 0.9577 26 1 2.1863 -4.2520 0.9663 27 1 3.1391 -3.5654 -0.4183 28 1 4.9454 -5.7486 -2.8628 29 1 1.8133 -7.6014 -5.7432 30 1 -0.6239 -7.5837 -5.8085 31 1 -1.9215 -6.3905 -4.0979 32 1 -0.8007 -5.2006 -2.2856 33 1 1.4997 -2.6204 -2.1896 34 1 -0.2045 -2.8738 -1.6166 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563592059.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:02 Heat of formation + Delta-G solvation = 70.169967 kcal Electronic energy + Delta-G solvation = -20342.482854 eV Core-core repulsion = 17242.134497 eV Total energy + Delta-G solvation = -3100.348357 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.42525 -39.36492 -37.41112 -34.96965 -32.92519 -32.16684 -31.36703 -30.14131 -27.87298 -25.37310 -25.27440 -23.89220 -23.35651 -21.29041 -19.08445 -18.40686 -17.79547 -17.52737 -16.35295 -15.32974 -15.14169 -14.95054 -14.91271 -14.42266 -13.97446 -13.81419 -13.73889 -13.02741 -12.45844 -12.21542 -12.16185 -11.91947 -11.67065 -11.51197 -11.10071 -10.92466 -10.72361 -10.56558 -10.40358 -10.18601 -9.54504 -9.20495 -9.02550 -8.87083 -8.71548 -8.29888 -7.91042 -6.39315 -4.48617 0.40649 0.88078 2.00339 3.09733 3.14860 3.22780 3.26768 3.98570 4.18802 4.23857 4.29145 4.41935 4.77941 4.85218 4.94573 4.99808 5.23976 5.38568 5.49633 5.75213 5.85606 5.91733 5.97436 6.06421 6.17292 6.21748 6.41052 6.43303 6.58776 6.65509 6.73833 6.83468 7.19818 7.33130 7.64772 7.66757 7.83850 8.38096 8.55059 9.22106 9.51402 10.67362 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.025994 B = 0.005327 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.919355 B = 5254.542977 C = 5614.853825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.533 4.533 8 H 0.072 0.928 9 C 0.251 3.749 10 O -0.568 6.568 11 C 0.017 3.983 12 N -0.433 5.433 13 C 0.386 3.614 14 N -0.570 5.570 15 C 0.324 3.676 16 N -0.542 5.542 17 C 0.169 3.831 18 C -0.118 4.118 19 C -0.077 4.077 20 C -0.144 4.144 21 C -0.046 4.046 22 C -0.163 4.163 23 C 0.002 3.998 24 H 0.273 0.727 25 H 0.392 0.608 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.192 0.808 29 H 0.135 0.865 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.140 0.860 33 H 0.069 0.931 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.219 -9.240 -7.765 12.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.734 3.266 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.571 4.571 8 H 0.090 0.910 9 C 0.208 3.792 10 O -0.380 6.380 11 C -0.110 4.110 12 N -0.152 5.152 13 C 0.136 3.864 14 N -0.290 5.290 15 C 0.033 3.967 16 N -0.258 5.258 17 C 0.043 3.957 18 C -0.137 4.137 19 C -0.098 4.098 20 C -0.162 4.162 21 C -0.067 4.067 22 C -0.170 4.170 23 C -0.124 4.124 24 H 0.084 0.916 25 H 0.249 0.751 26 H 0.096 0.904 27 H 0.121 0.879 28 H 0.208 0.792 29 H 0.153 0.847 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.158 0.842 33 H 0.087 0.913 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.367 -10.224 -7.469 12.667 hybrid contribution -0.111 1.657 -0.566 1.755 sum 0.256 -8.567 -8.035 11.749 Atomic orbital electron populations 1.69271 1.06174 1.28152 1.50308 1.25084 0.95029 0.99904 0.93063 0.86335 0.79909 0.81961 0.78375 1.20377 1.20809 1.19442 1.21523 0.93939 0.89967 1.51635 0.91026 1.19393 0.85058 0.91383 0.83316 1.86055 1.45017 1.48243 1.58707 1.24211 0.96716 0.94775 0.95288 1.66018 1.26818 1.14712 1.07661 1.21427 0.88162 0.88857 0.87984 1.68487 1.08689 1.22924 1.28889 1.24687 1.00784 0.86737 0.84469 1.68774 1.09136 1.22479 1.25414 1.18888 0.89522 0.93886 0.93414 1.20629 0.94082 1.00848 0.98121 1.20992 0.93739 0.97046 0.97985 1.20941 1.00461 0.99424 0.95389 1.21061 0.92604 0.95662 0.97335 1.19166 0.95998 1.03565 0.98240 1.24968 1.01765 0.81943 1.03728 0.91621 0.75144 0.90396 0.87915 0.79189 0.84703 0.85292 0.85332 0.84180 0.91255 0.90020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.01 11.02 55.43 0.61 -22.40 16 2 C 0.07 1.81 5.40 -17.82 -0.10 1.71 16 3 Si 0.91 19.79 29.54 -169.99 -5.02 14.77 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.53 -13.69 8.68 -34.44 -0.30 -13.99 16 8 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.25 6.10 1.57 -91.24 -0.14 5.96 16 10 O -0.57 -14.59 13.54 -35.23 -0.48 -15.07 16 11 C 0.02 0.38 6.81 -7.54 -0.05 0.33 16 12 N -0.43 -9.06 5.71 -182.13 -1.04 -10.10 16 13 C 0.39 7.56 5.88 -154.97 -0.91 6.65 16 14 N -0.57 -10.71 8.34 -13.54 -0.11 -10.82 16 15 C 0.32 5.28 12.22 -92.20 -1.13 4.15 16 16 N -0.54 -9.07 10.45 -12.65 -0.13 -9.20 16 17 C 0.17 2.82 6.61 -84.86 -0.56 2.26 16 18 C -0.12 -1.56 10.01 -39.56 -0.40 -1.96 16 19 C -0.08 -0.86 9.95 -39.91 -0.40 -1.26 16 20 C -0.14 -1.76 9.96 -39.89 -0.40 -2.16 16 21 C -0.05 -0.71 9.48 -39.62 -0.38 -1.09 16 22 C -0.16 -2.89 5.75 -106.68 -0.61 -3.51 16 23 C 0.00 0.04 6.95 -7.54 -0.05 -0.01 16 24 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 25 H 0.39 10.21 6.34 45.56 0.29 10.50 16 26 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 27 H 0.10 2.23 6.66 -51.93 -0.35 1.88 16 28 H 0.19 2.35 8.06 -52.49 -0.42 1.93 16 29 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 30 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 31 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 32 H 0.14 2.20 7.64 -52.49 -0.40 1.80 16 33 H 0.07 1.57 7.85 -51.93 -0.41 1.17 16 34 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 LS Contribution 292.30 15.07 4.40 4.40 Total: -1.00 -27.93 292.30 -10.14 -38.07 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -2.95 Total: 13.28 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -5.42 Total: -2.92 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.67 Total: -52.53 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.48 Total: -15.07 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.93 -10.14 -38.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563592059.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.239 kcal (2) G-P(sol) polarization free energy of solvation -27.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds