Wall clock time and date at job start Mon Mar 30 2020 04:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00013 * 2 1 4 4 H 1.48493 * 109.47137 * 269.99793 * 3 2 1 5 5 H 1.48503 * 109.47141 * 30.00175 * 3 2 1 6 6 H 1.48504 * 109.47081 * 149.99731 * 3 2 1 7 7 C 1.37876 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00203 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00353 * 359.97438 * 7 2 1 10 10 O 1.42894 * 113.38067 * 313.08362 * 9 7 2 11 11 C 1.53509 * 114.17134 * 180.02562 * 9 7 2 12 12 N 1.47485 * 87.93114 * 220.32976 * 11 9 7 13 13 C 1.37846 * 110.99929 * 138.70092 * 12 11 9 14 14 N 1.32647 * 120.91199 * 0.02562 * 13 12 11 15 15 C 1.32334 * 121.48510 * 180.02562 * 14 13 12 16 16 N 1.31200 * 122.97806 * 359.95305 * 15 14 13 17 17 C 1.34115 * 120.46623 * 0.02562 * 16 15 14 18 18 C 1.40151 * 122.00740 * 180.02562 * 17 16 15 19 19 C 1.36312 * 119.58397 * 179.97438 * 18 17 16 20 20 C 1.39215 * 121.03428 * 0.02562 * 19 18 17 21 21 C 1.36375 * 120.89425 * 359.97438 * 20 19 18 22 22 C 1.39928 * 119.50438 * 359.97438 * 21 20 19 23 23 C 1.47487 * 87.83326 * 27.01153 * 12 11 9 24 24 H 0.96990 * 119.99778 * 0.02562 * 1 2 3 25 25 H 0.96700 * 114.00464 * 46.91609 * 10 9 7 26 26 H 1.08995 * 113.47313 * 105.56804 * 11 9 7 27 27 H 1.09000 * 113.47831 * 335.09673 * 11 9 7 28 28 H 1.07995 * 118.51061 * 179.97438 * 15 14 13 29 29 H 1.08004 * 120.20605 * 0.02562 * 18 17 16 30 30 H 1.08004 * 119.48284 * 180.28309 * 19 18 17 31 31 H 1.08005 * 119.54940 * 179.97438 * 20 19 18 32 32 H 1.08002 * 120.24873 * 179.97438 * 21 20 19 33 33 H 1.09003 * 113.47356 * 87.75736 * 23 12 11 34 34 H 1.09004 * 113.47305 * 218.22078 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 8 0.1921 -2.5417 0.9601 11 6 2.1497 -3.7438 0.0028 12 7 1.2076 -4.3592 -0.9505 13 6 1.8817 -5.0431 -1.9395 14 7 3.2073 -5.0896 -1.9535 15 6 3.8660 -5.7423 -2.8976 16 7 3.2672 -6.3824 -3.8739 17 6 1.9287 -6.4001 -3.9551 18 6 1.2557 -7.0739 -4.9834 19 6 -0.1069 -7.0601 -5.0180 20 6 -0.8427 -6.3861 -4.0472 21 6 -0.2196 -5.7204 -3.0330 22 6 1.1781 -5.7159 -2.9679 23 6 0.8556 -2.9978 -1.3953 24 1 -0.4849 0.8400 -0.0004 25 1 -0.3724 -1.7566 0.9577 26 1 2.1863 -4.2520 0.9663 27 1 3.1391 -3.5654 -0.4183 28 1 4.9454 -5.7486 -2.8628 29 1 1.8133 -7.6014 -5.7432 30 1 -0.6239 -7.5837 -5.8085 31 1 -1.9215 -6.3905 -4.0979 32 1 -0.8007 -5.2006 -2.2856 33 1 1.4997 -2.6204 -2.1896 34 1 -0.2045 -2.8738 -1.6166 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563592059.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:02 Heat of formation + Delta-G solvation = 51.858244 kcal Electronic energy + Delta-G solvation = -20343.276910 eV Core-core repulsion = 17242.134497 eV Total energy + Delta-G solvation = -3101.142413 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.80263 -40.91650 -38.58211 -36.73333 -34.40842 -34.11776 -32.56085 -31.33638 -29.56053 -27.07185 -26.98192 -25.16523 -24.66665 -22.59948 -20.84316 -19.82993 -19.29736 -18.94353 -17.84970 -17.17284 -16.71419 -16.39587 -16.07299 -15.98081 -15.44882 -15.14027 -15.03323 -14.64067 -14.07300 -13.80620 -13.49313 -13.35194 -13.21703 -12.92564 -12.79821 -12.49468 -12.31545 -12.27813 -11.99931 -11.73482 -11.33324 -10.74581 -10.51783 -10.42813 -10.25277 -10.03544 -9.21378 -8.31313 -6.48216 -0.84456 -0.29215 0.78077 1.41779 1.44748 1.54892 1.96672 2.34456 2.55782 2.89562 2.99762 3.11496 3.16958 3.52901 3.61133 3.92592 3.96850 4.07611 4.18784 4.25040 4.32928 4.41487 4.53366 4.75048 4.83058 4.91224 4.93767 4.95805 5.21386 5.28171 5.31988 5.39665 5.69463 5.75194 5.88897 6.00368 6.07564 6.57070 7.07032 7.24991 7.48676 8.74815 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.025994 B = 0.005327 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.919355 B = 5254.542977 C = 5614.853825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.032 3.968 3 Si 0.969 3.031 4 H -0.275 1.275 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.557 4.557 8 H 0.066 0.934 9 C 0.231 3.769 10 O -0.577 6.577 11 C 0.026 3.974 12 N -0.430 5.430 13 C 0.357 3.643 14 N -0.585 5.585 15 C 0.309 3.691 16 N -0.539 5.539 17 C 0.145 3.855 18 C -0.121 4.121 19 C -0.059 4.059 20 C -0.121 4.121 21 C -0.078 4.078 22 C -0.177 4.177 23 C 0.018 3.982 24 H 0.278 0.722 25 H 0.388 0.612 26 H 0.074 0.926 27 H 0.102 0.898 28 H 0.224 0.776 29 H 0.158 0.842 30 H 0.178 0.822 31 H 0.164 0.836 32 H 0.127 0.873 33 H 0.057 0.943 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.686 -10.291 -9.912 14.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.168 4.168 3 Si 0.793 3.207 4 H -0.200 1.200 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.595 4.595 8 H 0.085 0.915 9 C 0.189 3.811 10 O -0.390 6.390 11 C -0.102 4.102 12 N -0.149 5.149 13 C 0.106 3.894 14 N -0.305 5.305 15 C 0.019 3.981 16 N -0.254 5.254 17 C 0.018 3.982 18 C -0.140 4.140 19 C -0.080 4.080 20 C -0.139 4.139 21 C -0.098 4.098 22 C -0.183 4.183 23 C -0.108 4.108 24 H 0.088 0.912 25 H 0.243 0.757 26 H 0.093 0.907 27 H 0.120 0.880 28 H 0.240 0.760 29 H 0.176 0.824 30 H 0.196 0.804 31 H 0.182 0.818 32 H 0.145 0.855 33 H 0.076 0.924 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.088 -11.305 -9.628 14.849 hybrid contribution -0.032 1.846 -0.032 1.846 sum -0.119 -9.459 -9.660 13.520 Atomic orbital electron populations 1.69332 1.07071 1.29015 1.50225 1.25780 0.95845 1.02673 0.92533 0.85390 0.78679 0.78252 0.78361 1.20019 1.20166 1.19376 1.21728 0.93930 0.91146 1.52683 0.91544 1.19618 0.85258 0.92012 0.84183 1.86035 1.45395 1.48000 1.59527 1.24035 0.96587 0.93937 0.95600 1.65963 1.26896 1.13968 1.08069 1.21457 0.88856 0.90128 0.88919 1.68415 1.08687 1.23545 1.29894 1.25297 1.02091 0.86680 0.84040 1.68819 1.09525 1.21951 1.25155 1.19393 0.89603 0.94786 0.94395 1.21018 0.95216 1.00261 0.97474 1.21531 0.92976 0.95367 0.98087 1.21419 1.02350 0.96577 0.93515 1.21100 0.91785 0.97897 0.99050 1.19334 0.97120 1.03820 0.98063 1.24562 1.00981 0.83267 1.02018 0.91245 0.75684 0.90745 0.88009 0.75954 0.82420 0.80447 0.81847 0.85462 0.92418 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.52 11.02 21.45 0.24 -47.28 16 2 C 0.03 1.64 5.40 84.65 0.46 2.10 16 3 Si 0.97 40.73 29.54 68.60 2.03 42.76 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 7 C -0.56 -29.39 8.68 25.60 0.22 -29.17 16 8 H 0.07 3.47 7.81 -2.91 -0.02 3.45 16 9 C 0.23 11.64 1.57 -11.20 -0.02 11.63 16 10 O -0.58 -30.72 13.54 -148.98 -2.02 -32.74 16 11 C 0.03 1.20 6.81 83.58 0.57 1.76 16 12 N -0.43 -18.66 5.71 -730.51 -4.17 -22.83 16 13 C 0.36 14.31 5.88 134.00 0.79 15.10 16 14 N -0.59 -22.44 8.34 -196.76 -1.64 -24.08 16 15 C 0.31 9.97 12.22 180.90 2.21 12.18 16 16 N -0.54 -17.49 10.45 -193.94 -2.03 -19.51 16 17 C 0.14 4.62 6.61 40.10 0.27 4.88 16 18 C -0.12 -2.80 10.01 22.29 0.22 -2.57 16 19 C -0.06 -1.04 9.95 22.06 0.22 -0.82 16 20 C -0.12 -2.53 9.96 22.07 0.22 -2.31 16 21 C -0.08 -2.34 9.48 22.24 0.21 -2.13 16 22 C -0.18 -6.25 5.75 -21.20 -0.12 -6.38 16 23 C 0.02 0.85 6.95 83.58 0.58 1.44 16 24 H 0.28 13.52 8.31 -92.72 -0.77 12.75 16 25 H 0.39 20.89 6.34 -74.06 -0.47 20.42 16 26 H 0.07 3.37 8.14 -2.39 -0.02 3.35 16 27 H 0.10 4.61 6.66 -2.39 -0.02 4.59 16 28 H 0.22 5.29 8.06 -2.91 -0.02 5.26 16 29 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 30 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 31 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.13 4.08 7.64 -2.91 -0.02 4.06 16 33 H 0.06 2.74 7.85 -2.39 -0.02 2.72 16 34 H 0.08 3.54 8.14 -2.38 -0.02 3.52 16 Total: -1.00 -61.83 292.30 -1.10 -62.92 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: 0.67 Total: 35.06 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 5.83 Total: 5.71 kcal Atomic # 7 Polarization: -106.11 SS G_CDS: -7.60 Total: -113.71 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -2.02 Total: -32.74 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -61.83 -1.10 -62.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563592059.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.779 kcal (2) G-P(sol) polarization free energy of solvation -61.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds