Wall clock time and date at job start Mon Mar 30 2020 04:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 C 1.53938 * 113.74184 * 278.73847 * 9 7 2 11 11 N 1.47813 * 86.03931 * 222.08648 * 10 9 7 12 12 C 1.34770 * 134.45830 * 204.64432 * 11 10 9 13 13 O 1.21657 * 119.99914 * 179.86697 * 12 11 10 14 14 C 1.47032 * 120.00106 * 359.86933 * 12 11 10 15 15 C 1.35886 * 125.43939 * 179.97438 * 14 12 11 16 16 C 1.41475 * 107.58959 * 179.97438 * 15 14 12 17 17 C 1.40182 * 133.68368 * 179.97438 * 16 15 14 18 18 C 1.37028 * 118.21240 * 179.97438 * 17 16 15 19 19 C 1.38741 * 119.64001 * 0.04352 * 18 17 16 20 20 N 1.31578 * 121.56781 * 359.97438 * 19 18 17 21 21 C 1.32733 * 121.55106 * 359.97438 * 20 19 18 22 22 N 1.37205 * 132.92829 * 180.34876 * 21 20 19 23 23 H 0.96997 * 125.53428 * 359.92312 * 22 21 20 24 24 C 1.47586 * 91.04834 * 24.55241 * 11 10 9 25 25 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 26 26 H 1.09000 * 112.94525 * 50.33174 * 9 7 2 27 27 H 1.09002 * 113.76959 * 336.35006 * 10 9 7 28 28 H 1.08998 * 113.76918 * 107.75067 * 10 9 7 29 29 H 1.07999 * 126.20171 * 359.97438 * 15 14 12 30 30 H 1.08003 * 120.89043 * 0.02562 * 17 16 15 31 31 H 1.07997 * 120.17783 * 179.97438 * 18 17 16 32 32 H 1.08002 * 119.21758 * 179.97438 * 19 18 17 33 33 H 1.09008 * 113.76654 * 221.15420 * 24 11 10 34 34 H 1.08991 * 113.77014 * 89.75468 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 6 4.1307 -0.9798 -1.3941 11 7 5.0915 -2.0379 -1.0170 12 6 6.3431 -2.3571 -1.4016 13 8 6.9082 -3.3115 -0.9018 14 6 7.0255 -1.5519 -2.4251 15 6 8.2820 -1.7730 -2.8931 16 6 8.5579 -0.7803 -3.8626 17 6 9.6676 -0.4991 -4.6718 18 6 9.5930 0.5708 -5.5246 19 6 8.4375 1.3379 -5.5636 20 7 7.4026 1.0639 -4.7986 21 6 7.4152 0.0403 -3.9537 22 7 6.4888 -0.4538 -3.0704 23 1 5.6025 -0.0892 -2.9204 24 6 4.1311 -2.6026 -0.0490 25 1 -0.4850 0.8401 0.0004 26 1 3.9367 -0.5536 0.7715 27 1 3.4708 -1.2581 -2.2158 28 1 4.5859 0.0018 -1.5261 29 1 8.9489 -2.5632 -2.5815 30 1 10.5570 -1.1100 -4.6248 31 1 10.4295 0.8164 -6.1620 32 1 8.3863 2.1799 -6.2380 33 1 4.5867 -2.9143 0.8910 34 1 3.4714 -3.3586 -0.4747 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598020590.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:48 Heat of formation + Delta-G solvation = 77.055868 kcal Electronic energy + Delta-G solvation = -19777.878354 eV Core-core repulsion = 16677.828593 eV Total energy + Delta-G solvation = -3100.049762 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.87064 -39.70464 -37.91434 -37.14307 -33.24724 -32.76895 -30.66166 -29.97528 -29.05478 -26.10419 -25.50269 -23.91286 -22.81250 -21.40363 -20.11227 -19.31034 -18.00183 -17.48666 -17.18443 -16.19548 -15.64375 -15.52282 -15.26877 -14.90361 -14.36960 -14.06275 -13.47021 -13.27178 -13.24398 -13.04551 -12.62592 -12.31441 -12.27504 -12.07501 -11.82757 -11.09749 -10.91901 -10.70335 -10.25411 -10.09627 -9.64647 -9.54537 -9.36392 -8.81710 -8.65384 -8.43647 -8.09959 -6.31863 -4.36094 0.57202 1.26823 2.07186 2.57078 3.04897 3.11775 3.20200 3.22792 3.46102 3.76024 4.19033 4.33424 4.49120 4.56951 4.82191 4.89829 4.93962 5.10340 5.37670 5.43735 5.62143 5.67494 5.75071 5.86625 5.92815 5.99333 6.08617 6.14760 6.20433 6.30049 6.40381 6.76200 7.00794 7.11065 7.39658 7.85736 7.96729 8.21992 8.31322 8.71537 9.27710 10.79986 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.021844 B = 0.005278 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.489713 B = 5304.177945 C = 6377.321498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.080 3.920 3 Si 0.868 3.132 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.517 4.517 8 H 0.083 0.917 9 C -0.006 4.006 10 C 0.072 3.928 11 N -0.636 5.636 12 C 0.593 3.407 13 O -0.537 6.537 14 C 0.047 3.953 15 C -0.113 4.113 16 C -0.161 4.161 17 C -0.019 4.019 18 C -0.208 4.208 19 C 0.147 3.853 20 N -0.497 5.497 21 C 0.290 3.710 22 N -0.562 5.562 23 H 0.425 0.575 24 C 0.122 3.878 25 H 0.268 0.732 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.160 0.840 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.161 0.839 33 H 0.072 0.928 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.472 1.739 -9.356 19.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.124 4.124 3 Si 0.694 3.306 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.555 4.555 8 H 0.101 0.899 9 C -0.026 4.026 10 C -0.050 4.050 11 N -0.370 5.370 12 C 0.381 3.619 13 O -0.415 6.415 14 C -0.063 4.063 15 C -0.140 4.140 16 C -0.168 4.168 17 C -0.046 4.046 18 C -0.229 4.229 19 C -0.022 4.022 20 N -0.210 5.210 21 C 0.055 3.945 22 N -0.172 5.172 23 H 0.268 0.732 24 C 0.001 3.999 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.114 0.886 28 H 0.072 0.928 29 H 0.177 0.823 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.179 0.821 33 H 0.090 0.910 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 15.784 1.776 -9.028 18.270 hybrid contribution 0.623 0.790 -0.128 1.014 sum 16.407 2.566 -9.157 18.964 Atomic orbital electron populations 1.69879 1.06300 1.27446 1.48784 1.24987 0.94668 0.99015 0.93759 0.86982 0.80681 0.83927 0.78986 1.19851 1.20831 1.18714 1.20805 0.87357 0.95050 1.52302 0.89938 1.21042 0.97388 0.92699 0.91448 1.24300 0.88208 0.88500 1.04014 1.50390 1.11837 1.32816 1.41921 1.16817 0.80964 0.83280 0.80823 1.90811 1.65928 1.28643 1.56146 1.20413 0.95323 0.91301 0.99279 1.20809 0.94882 1.00384 0.97927 1.18877 0.96056 0.99596 1.02319 1.20825 0.96350 0.95448 0.91940 1.21585 1.00357 0.98258 1.02742 1.22558 0.87479 0.97781 0.94363 1.66583 1.30726 1.16940 1.06772 1.18473 0.88920 0.93549 0.93521 1.42304 1.15999 1.25571 1.33312 0.73245 1.23357 0.86631 0.99059 0.90805 0.92182 0.91562 0.88635 0.92762 0.82255 0.84622 0.84517 0.82145 0.90955 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.00 13.96 55.43 0.77 -24.22 16 2 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 19.42 26.96 -169.99 -4.58 14.83 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.26 -5.64 6.29 56.52 0.36 -5.28 16 7 C -0.52 -12.89 9.33 -34.44 -0.32 -13.21 16 8 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 9 C -0.01 -0.13 2.90 -90.84 -0.26 -0.39 16 10 C 0.07 1.34 6.05 -2.84 -0.02 1.32 16 11 N -0.64 -11.80 3.61 -179.63 -0.65 -12.45 16 12 C 0.59 11.03 8.03 -12.70 -0.10 10.93 16 13 O -0.54 -11.14 17.57 5.23 0.09 -11.05 16 14 C 0.05 0.78 6.92 -82.26 -0.57 0.21 16 15 C -0.11 -1.64 10.54 -39.19 -0.41 -2.06 16 16 C -0.16 -2.22 6.18 -106.90 -0.66 -2.88 16 17 C -0.02 -0.20 10.18 -39.29 -0.40 -0.60 16 18 C -0.21 -1.87 10.04 -39.83 -0.40 -2.27 16 19 C 0.15 1.56 11.15 -17.47 -0.19 1.36 16 20 N -0.50 -7.18 10.40 -12.24 -0.13 -7.31 16 21 C 0.29 4.45 8.40 -155.76 -1.31 3.14 16 22 N -0.56 -8.89 5.95 -8.85 -0.05 -8.94 16 23 H 0.42 6.54 5.66 -40.82 -0.23 6.31 16 24 C 0.12 2.30 8.39 -2.96 -0.02 2.27 16 25 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.07 1.41 6.70 -51.93 -0.35 1.06 16 27 H 0.10 1.73 8.09 -51.93 -0.42 1.31 16 28 H 0.05 0.94 6.32 -51.93 -0.33 0.61 16 29 H 0.16 2.04 8.06 -52.49 -0.42 1.62 16 30 H 0.14 1.01 8.06 -52.48 -0.42 0.58 16 31 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 32 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 34 H 0.09 1.59 8.09 -51.93 -0.42 1.17 16 LS Contribution 294.14 15.07 4.43 4.43 Total: -1.00 -30.24 294.14 -8.35 -38.59 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -3.47 Total: 6.30 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -4.77 Total: -0.19 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -0.06 Total: -52.93 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.58 Total: 14.83 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.24 -8.35 -38.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598020590.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.650 kcal (2) G-P(sol) polarization free energy of solvation -30.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds