Wall clock time and date at job start Mon Mar 30 2020 04:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 C 1.53938 * 113.74184 * 278.73847 * 9 7 2 11 11 N 1.47813 * 86.03931 * 222.08648 * 10 9 7 12 12 C 1.34770 * 134.45830 * 204.64432 * 11 10 9 13 13 O 1.21657 * 119.99914 * 179.86697 * 12 11 10 14 14 C 1.47032 * 120.00106 * 359.86933 * 12 11 10 15 15 C 1.35886 * 125.43939 * 179.97438 * 14 12 11 16 16 C 1.41475 * 107.58959 * 179.97438 * 15 14 12 17 17 C 1.40182 * 133.68368 * 179.97438 * 16 15 14 18 18 C 1.37028 * 118.21240 * 179.97438 * 17 16 15 19 19 C 1.38741 * 119.64001 * 0.04352 * 18 17 16 20 20 N 1.31578 * 121.56781 * 359.97438 * 19 18 17 21 21 C 1.32733 * 121.55106 * 359.97438 * 20 19 18 22 22 N 1.37205 * 132.92829 * 180.34876 * 21 20 19 23 23 H 0.96997 * 125.53428 * 359.92312 * 22 21 20 24 24 C 1.47586 * 91.04834 * 24.55241 * 11 10 9 25 25 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 26 26 H 1.09000 * 112.94525 * 50.33174 * 9 7 2 27 27 H 1.09002 * 113.76959 * 336.35006 * 10 9 7 28 28 H 1.08998 * 113.76918 * 107.75067 * 10 9 7 29 29 H 1.07999 * 126.20171 * 359.97438 * 15 14 12 30 30 H 1.08003 * 120.89043 * 0.02562 * 17 16 15 31 31 H 1.07997 * 120.17783 * 179.97438 * 18 17 16 32 32 H 1.08002 * 119.21758 * 179.97438 * 19 18 17 33 33 H 1.09008 * 113.76654 * 221.15420 * 24 11 10 34 34 H 1.08991 * 113.77014 * 89.75468 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 6 4.1307 -0.9798 -1.3941 11 7 5.0915 -2.0379 -1.0170 12 6 6.3431 -2.3571 -1.4016 13 8 6.9082 -3.3115 -0.9018 14 6 7.0255 -1.5519 -2.4251 15 6 8.2820 -1.7730 -2.8931 16 6 8.5579 -0.7803 -3.8626 17 6 9.6676 -0.4991 -4.6718 18 6 9.5930 0.5708 -5.5246 19 6 8.4375 1.3379 -5.5636 20 7 7.4026 1.0639 -4.7986 21 6 7.4152 0.0403 -3.9537 22 7 6.4888 -0.4538 -3.0704 23 1 5.6025 -0.0892 -2.9204 24 6 4.1311 -2.6026 -0.0490 25 1 -0.4850 0.8401 0.0004 26 1 3.9367 -0.5536 0.7715 27 1 3.4708 -1.2581 -2.2158 28 1 4.5859 0.0018 -1.5261 29 1 8.9489 -2.5632 -2.5815 30 1 10.5570 -1.1100 -4.6248 31 1 10.4295 0.8164 -6.1620 32 1 8.3863 2.1799 -6.2380 33 1 4.5867 -2.9143 0.8910 34 1 3.4714 -3.3586 -0.4747 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598020590.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:48 Heat of formation + Delta-G solvation = 57.598429 kcal Electronic energy + Delta-G solvation = -19778.722092 eV Core-core repulsion = 16677.828593 eV Total energy + Delta-G solvation = -3100.893500 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.91031 -41.12457 -39.12505 -38.45743 -34.74163 -34.15083 -31.96661 -31.14485 -30.26734 -27.61903 -27.14216 -25.09184 -23.76839 -22.59244 -21.52436 -20.67603 -19.27030 -19.06752 -18.63208 -17.23182 -16.99585 -16.76882 -16.38547 -16.24046 -15.82185 -15.36739 -14.92863 -14.84346 -14.30960 -14.22330 -13.91215 -13.63538 -13.59987 -13.20369 -13.13390 -12.84884 -12.62675 -11.93950 -11.77383 -11.63520 -11.41707 -11.11879 -10.77806 -10.42516 -9.91122 -9.55935 -9.23620 -8.33183 -6.41212 -0.42326 0.40898 0.96183 1.32829 1.38065 1.43988 1.48601 1.68847 2.14295 2.30833 2.88197 2.96716 3.16065 3.45777 3.65270 3.84359 4.02237 4.12254 4.16828 4.18746 4.31108 4.35881 4.43457 4.63347 4.63954 4.69650 4.79447 4.88890 5.23482 5.29866 5.35035 5.40711 5.51948 5.81891 6.07182 6.21148 6.50792 6.67454 6.83537 6.96427 7.26098 8.82258 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.021844 B = 0.005278 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.489713 B = 5304.177945 C = 6377.321498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.027 3.973 3 Si 0.926 3.074 4 H -0.259 1.259 5 H -0.288 1.288 6 H -0.245 1.245 7 C -0.515 4.515 8 H 0.048 0.952 9 C -0.012 4.012 10 C 0.086 3.914 11 N -0.638 5.638 12 C 0.596 3.404 13 O -0.565 6.565 14 C 0.012 3.988 15 C -0.095 4.095 16 C -0.181 4.181 17 C -0.016 4.016 18 C -0.195 4.195 19 C 0.151 3.849 20 N -0.535 5.535 21 C 0.268 3.732 22 N -0.568 5.568 23 H 0.421 0.579 24 C 0.124 3.876 25 H 0.269 0.731 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.173 0.827 30 H 0.169 0.831 31 H 0.181 0.819 32 H 0.196 0.804 33 H 0.082 0.918 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.028 3.208 -11.288 23.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.172 4.172 3 Si 0.750 3.250 4 H -0.184 1.184 5 H -0.214 1.214 6 H -0.169 1.169 7 C -0.553 4.553 8 H 0.066 0.934 9 C -0.032 4.032 10 C -0.037 4.037 11 N -0.370 5.370 12 C 0.386 3.614 13 O -0.445 6.445 14 C -0.097 4.097 15 C -0.123 4.123 16 C -0.188 4.188 17 C -0.042 4.042 18 C -0.216 4.216 19 C -0.017 4.017 20 N -0.249 5.249 21 C 0.035 3.965 22 N -0.178 5.178 23 H 0.263 0.737 24 C 0.003 3.997 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.114 0.886 28 H 0.089 0.911 29 H 0.190 0.810 30 H 0.187 0.813 31 H 0.199 0.801 32 H 0.213 0.787 33 H 0.100 0.900 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 19.368 3.233 -10.970 22.492 hybrid contribution -0.367 0.331 0.330 0.594 sum 19.001 3.564 -10.640 22.067 Atomic orbital electron populations 1.70020 1.08209 1.28353 1.51223 1.25757 0.95232 1.02628 0.93586 0.86037 0.79879 0.79348 0.79780 1.18374 1.21355 1.16906 1.20972 0.89563 0.93665 1.51080 0.93424 1.20960 0.94736 0.94398 0.93085 1.24054 0.87991 0.89495 1.02142 1.50297 1.12021 1.32783 1.41945 1.17058 0.80470 0.83069 0.80776 1.90780 1.66405 1.29955 1.57403 1.20071 0.96281 0.92724 1.00644 1.21075 0.94065 1.00170 0.96946 1.19125 0.97036 0.99395 1.03245 1.21318 0.96211 0.95952 0.90710 1.22080 1.00824 0.96673 1.01992 1.23370 0.86979 0.98271 0.93078 1.66643 1.32800 1.17476 1.08021 1.18776 0.89333 0.94427 0.93938 1.42211 1.16069 1.25671 1.33896 0.73722 1.23274 0.86811 0.97987 0.91604 0.92210 0.91336 0.88612 0.91060 0.80953 0.81334 0.80140 0.78739 0.89971 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.59 13.96 21.45 0.30 -54.29 16 2 C 0.03 1.45 5.47 84.66 0.46 1.91 16 3 Si 0.93 39.84 26.96 68.60 1.85 41.69 16 4 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.25 -9.80 6.29 99.48 0.63 -9.17 16 7 C -0.51 -26.33 9.33 25.60 0.24 -26.10 16 8 H 0.05 2.71 8.06 -2.91 -0.02 2.68 16 9 C -0.01 -0.51 2.90 -10.88 -0.03 -0.54 16 10 C 0.09 3.13 6.05 86.44 0.52 3.65 16 11 N -0.64 -23.55 3.61 -840.48 -3.04 -26.59 16 12 C 0.60 22.10 8.03 86.55 0.69 22.79 16 13 O -0.56 -23.43 17.57 -4.21 -0.07 -23.50 16 14 C 0.01 0.39 6.92 39.90 0.28 0.67 16 15 C -0.10 -2.63 10.54 22.52 0.24 -2.40 16 16 C -0.18 -4.56 6.18 -21.34 -0.13 -4.69 16 17 C -0.02 -0.26 10.18 22.46 0.23 -0.03 16 18 C -0.19 -2.50 10.04 22.11 0.22 -2.28 16 19 C 0.15 2.60 11.15 84.85 0.95 3.54 16 20 N -0.54 -14.29 10.40 -192.64 -2.00 -16.29 16 21 C 0.27 7.85 8.40 134.02 1.13 8.98 16 22 N -0.57 -17.65 5.95 -181.91 -1.08 -18.73 16 23 H 0.42 12.81 5.66 -92.71 -0.52 12.28 16 24 C 0.12 4.71 8.39 86.49 0.73 5.43 16 25 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16 26 H 0.07 2.84 6.70 -2.39 -0.02 2.83 16 27 H 0.10 3.48 8.09 -2.39 -0.02 3.46 16 28 H 0.07 2.37 6.32 -2.39 -0.02 2.36 16 29 H 0.17 4.11 8.06 -2.91 -0.02 4.09 16 30 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 31 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 32 H 0.20 1.81 8.06 -2.91 -0.02 1.79 16 33 H 0.08 2.93 8.14 -2.38 -0.02 2.91 16 34 H 0.09 3.25 8.09 -2.39 -0.02 3.23 16 Total: -1.00 -67.77 294.14 2.01 -65.75 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.54 Total: 21.01 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 5.52 Total: 10.96 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -5.82 Total: -115.90 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.07 Total: -23.50 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 1.85 Total: 41.69 kcal Total: -67.77 2.01 -65.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598020590.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.352 kcal (2) G-P(sol) polarization free energy of solvation -67.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds