Wall clock time and date at job start Mon Mar 30 2020 04:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99732 * 2 1 4 4 H 1.48497 * 109.47456 * 239.99754 * 3 2 1 5 5 H 1.48502 * 109.47237 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47028 * 119.99960 * 3 2 1 7 7 C 1.37875 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99890 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99943 * 359.97438 * 7 2 1 10 10 C 1.53499 * 114.20951 * 180.02562 * 9 7 2 11 11 N 1.47067 * 87.98698 * 139.65882 * 10 9 7 12 12 C 1.34774 * 136.05821 * 152.62634 * 11 10 9 13 13 O 1.21592 * 119.99886 * 354.44406 * 12 11 10 14 14 C 1.47570 * 120.00055 * 174.45042 * 12 11 10 15 15 C 1.41756 * 120.01203 * 352.98458 * 14 12 11 16 16 C 1.35626 * 119.53878 * 179.69673 * 15 14 12 17 17 C 1.41177 * 119.50948 * 0.59642 * 16 15 14 18 18 N 1.32418 * 132.12052 * 179.70206 * 17 16 15 19 19 C 1.33600 * 109.22222 * 179.97438 * 18 17 16 20 20 C 1.35002 * 108.66033 * 359.97438 * 19 18 17 21 21 N 1.37013 * 107.14268 * 0.02562 * 20 19 18 22 22 C 1.35912 * 132.41460 * 180.02562 * 21 20 19 23 23 C 1.47066 * 87.88156 * 332.88278 * 11 10 9 24 24 H 0.96999 * 119.99841 * 0.02562 * 1 2 3 25 25 H 1.09002 * 113.28279 * 46.93700 * 9 7 2 26 26 H 1.08998 * 113.46254 * 24.87117 * 10 9 7 27 27 H 1.09002 * 113.51784 * 254.45067 * 10 9 7 28 28 H 1.08002 * 120.23050 * 359.97438 * 15 14 12 29 29 H 1.08002 * 120.24629 * 180.27490 * 16 15 14 30 30 H 1.07994 * 125.66761 * 179.97438 * 19 18 17 31 31 H 1.07998 * 126.42584 * 179.97438 * 20 19 18 32 32 H 1.07997 * 119.75781 * 0.02562 * 22 21 20 33 33 H 1.09003 * 113.46739 * 141.90656 * 23 11 10 34 34 H 1.09007 * 113.46601 * 272.33701 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.1489 -3.7442 -0.0005 11 7 1.2101 -4.3575 0.9509 12 6 0.8321 -5.6112 1.2698 13 8 1.2470 -6.5541 0.6239 14 6 -0.0853 -5.8396 2.4029 15 6 -0.4516 -4.7613 3.2471 16 6 -1.3003 -4.9808 4.2820 17 6 -1.7962 -6.2827 4.5105 18 7 -2.6152 -6.7727 5.4285 19 6 -2.7797 -8.0817 5.2176 20 6 -2.0504 -8.4405 4.1396 21 7 -1.4229 -7.3115 3.6826 22 6 -0.5779 -7.0902 2.6413 23 6 0.8603 -3.0003 1.3966 24 1 -0.4850 0.8401 -0.0004 25 1 0.4434 -2.5303 -0.7317 26 1 3.1386 -3.5656 0.4200 27 1 2.1860 -4.2537 -0.9634 28 1 -0.0611 -3.7710 3.0648 29 1 -1.5905 -4.1667 4.9297 30 1 -3.3939 -8.7428 5.8108 31 1 -1.9752 -9.4316 3.7173 32 1 -0.2942 -7.9097 1.9977 33 1 -0.1991 -2.8768 1.6215 34 1 1.5067 -2.6237 2.1894 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598031591.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:06 Heat of formation + Delta-G solvation = 101.912967 kcal Electronic energy + Delta-G solvation = -19692.042183 eV Core-core repulsion = 16593.070306 eV Total energy + Delta-G solvation = -3098.971877 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.88383 -39.88445 -37.67734 -36.65349 -33.81312 -32.78162 -30.85548 -29.09333 -28.82935 -25.64095 -25.34567 -23.71271 -23.02532 -21.82739 -20.70515 -18.90620 -17.97062 -17.09899 -16.80922 -16.05866 -16.00211 -15.67883 -14.89998 -14.63868 -14.51849 -14.44306 -13.87695 -13.56803 -13.07329 -12.54073 -12.42830 -11.80300 -11.79528 -11.63491 -11.38493 -11.11033 -11.01284 -10.88575 -10.42096 -10.24709 -9.87857 -9.35239 -9.17234 -8.96716 -8.66109 -8.10908 -7.91309 -6.26214 -4.32805 0.52014 1.04498 2.36720 2.55239 3.15254 3.20839 3.27208 3.27787 3.37801 3.70919 4.14916 4.26892 4.43448 4.55617 4.74279 4.87348 5.03345 5.17573 5.27962 5.32778 5.76997 5.79345 5.95460 6.00387 6.05979 6.12623 6.31478 6.33206 6.36701 6.46974 6.49053 6.66416 6.88966 7.44654 7.70974 7.73314 8.06894 8.25269 8.49055 8.71444 9.34908 10.83259 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.030371 B = 0.004225 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.706170 B = 6626.099541 C = 7365.098778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.070 3.930 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.064 0.936 9 C 0.037 3.963 10 C 0.102 3.898 11 N -0.633 5.633 12 C 0.585 3.415 13 O -0.561 6.561 14 C -0.141 4.141 15 C -0.083 4.083 16 C -0.090 4.090 17 C 0.234 3.766 18 N -0.498 5.498 19 C 0.031 3.969 20 C -0.102 4.102 21 N -0.366 5.366 22 C 0.119 3.881 23 C 0.087 3.913 24 H 0.266 0.734 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.164 0.836 29 H 0.157 0.843 30 H 0.181 0.819 31 H 0.184 0.816 32 H 0.177 0.823 33 H 0.069 0.931 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.683 -10.801 7.129 13.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.134 4.134 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.083 0.917 9 C 0.018 3.982 10 C -0.020 4.020 11 N -0.364 5.364 12 C 0.374 3.626 13 O -0.443 6.443 14 C -0.147 4.147 15 C -0.107 4.107 16 C -0.110 4.110 17 C -0.009 4.009 18 N -0.217 5.217 19 C -0.119 4.119 20 C -0.232 4.232 21 N -0.038 5.038 22 C -0.006 4.006 23 C -0.035 4.035 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.181 0.819 29 H 0.174 0.826 30 H 0.198 0.802 31 H 0.201 0.799 32 H 0.194 0.806 33 H 0.087 0.913 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.088 -11.004 7.481 13.659 hybrid contribution 0.685 0.281 -0.487 0.886 sum -2.403 -10.723 6.994 13.025 Atomic orbital electron populations 1.69931 1.06082 1.27442 1.48605 1.25023 0.94866 0.99441 0.94055 0.86582 0.79603 0.82549 0.78884 1.20020 1.21181 1.20007 1.20851 0.93032 0.89416 1.52591 0.91749 1.20350 0.94799 0.91186 0.91877 1.23429 0.94250 0.92921 0.91363 1.49804 1.42079 1.04452 1.40096 1.17159 0.80929 0.81767 0.82721 1.90741 1.58795 1.41244 1.53533 1.19499 1.02709 0.92861 0.99621 1.21854 0.95706 1.00379 0.92725 1.20229 0.98445 0.92735 0.99569 1.21217 0.98631 0.90574 0.90518 1.70752 1.17922 1.09599 1.23462 1.22520 1.00523 0.92287 0.96584 1.22726 1.05842 0.91514 1.03115 1.42821 1.30188 1.10361 1.20392 1.21650 0.90720 0.99046 0.89217 1.23878 1.00100 0.76636 1.02895 0.92433 0.91117 0.90388 0.92053 0.81918 0.82577 0.80173 0.79935 0.80605 0.91295 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.01 13.26 55.43 0.74 -22.27 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 19.25 29.54 -169.99 -5.02 14.23 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.52 -12.50 8.82 -34.44 -0.30 -12.81 16 8 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 9 C 0.04 0.81 3.79 -91.26 -0.35 0.47 16 10 C 0.10 1.97 8.18 -8.51 -0.07 1.90 16 11 N -0.63 -11.96 3.67 -186.47 -0.68 -12.64 16 12 C 0.59 10.87 7.99 -12.46 -0.10 10.77 16 13 O -0.56 -11.69 17.07 5.28 0.09 -11.60 16 14 C -0.14 -2.21 5.84 -105.37 -0.61 -2.83 16 15 C -0.08 -1.20 9.10 -39.17 -0.36 -1.56 16 16 C -0.09 -1.23 10.09 -39.40 -0.40 -1.63 16 17 C 0.23 3.50 7.81 -155.92 -1.22 2.28 16 18 N -0.50 -7.45 11.31 -12.72 -0.14 -7.60 16 19 C 0.03 0.37 11.82 -17.93 -0.21 0.15 16 20 C -0.10 -1.14 11.75 -16.39 -0.19 -1.33 16 21 N -0.37 -5.02 2.93 -62.31 -0.18 -5.21 16 22 C 0.12 1.67 10.49 -16.37 -0.17 1.50 16 23 C 0.09 1.65 5.66 -8.52 -0.05 1.60 16 24 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 25 H 0.07 1.71 8.11 -51.93 -0.42 1.29 16 26 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.16 2.32 4.26 -52.49 -0.22 2.10 16 29 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.18 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.18 2.19 7.57 -52.49 -0.40 1.80 16 33 H 0.07 1.29 6.77 -51.93 -0.35 0.94 16 34 H 0.08 1.48 8.08 -51.93 -0.42 1.06 16 LS Contribution 297.23 15.07 4.48 4.48 Total: -1.00 -29.15 297.23 -8.32 -37.47 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -3.47 Total: 2.96 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -4.13 Total: 0.17 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -0.28 Total: -47.71 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.15 -8.32 -37.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598031591.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.383 kcal (2) G-P(sol) polarization free energy of solvation -29.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds