Wall clock time and date at job start Mon Mar 30 2020 04:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99732 * 2 1 4 4 H 1.48497 * 109.47456 * 239.99754 * 3 2 1 5 5 H 1.48502 * 109.47237 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47028 * 119.99960 * 3 2 1 7 7 C 1.37875 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99890 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99943 * 359.97438 * 7 2 1 10 10 C 1.53499 * 114.20951 * 180.02562 * 9 7 2 11 11 N 1.47067 * 87.98698 * 139.65882 * 10 9 7 12 12 C 1.34774 * 136.05821 * 152.62634 * 11 10 9 13 13 O 1.21592 * 119.99886 * 354.44406 * 12 11 10 14 14 C 1.47570 * 120.00055 * 174.45042 * 12 11 10 15 15 C 1.41756 * 120.01203 * 352.98458 * 14 12 11 16 16 C 1.35626 * 119.53878 * 179.69673 * 15 14 12 17 17 C 1.41177 * 119.50948 * 0.59642 * 16 15 14 18 18 N 1.32418 * 132.12052 * 179.70206 * 17 16 15 19 19 C 1.33600 * 109.22222 * 179.97438 * 18 17 16 20 20 C 1.35002 * 108.66033 * 359.97438 * 19 18 17 21 21 N 1.37013 * 107.14268 * 0.02562 * 20 19 18 22 22 C 1.35912 * 132.41460 * 180.02562 * 21 20 19 23 23 C 1.47066 * 87.88156 * 332.88278 * 11 10 9 24 24 H 0.96999 * 119.99841 * 0.02562 * 1 2 3 25 25 H 1.09002 * 113.28279 * 46.93700 * 9 7 2 26 26 H 1.08998 * 113.46254 * 24.87117 * 10 9 7 27 27 H 1.09002 * 113.51784 * 254.45067 * 10 9 7 28 28 H 1.08002 * 120.23050 * 359.97438 * 15 14 12 29 29 H 1.08002 * 120.24629 * 180.27490 * 16 15 14 30 30 H 1.07994 * 125.66761 * 179.97438 * 19 18 17 31 31 H 1.07998 * 126.42584 * 179.97438 * 20 19 18 32 32 H 1.07997 * 119.75781 * 0.02562 * 22 21 20 33 33 H 1.09003 * 113.46739 * 141.90656 * 23 11 10 34 34 H 1.09007 * 113.46601 * 272.33701 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.1489 -3.7442 -0.0005 11 7 1.2101 -4.3575 0.9509 12 6 0.8321 -5.6112 1.2698 13 8 1.2470 -6.5541 0.6239 14 6 -0.0853 -5.8396 2.4029 15 6 -0.4516 -4.7613 3.2471 16 6 -1.3003 -4.9808 4.2820 17 6 -1.7962 -6.2827 4.5105 18 7 -2.6152 -6.7727 5.4285 19 6 -2.7797 -8.0817 5.2176 20 6 -2.0504 -8.4405 4.1396 21 7 -1.4229 -7.3115 3.6826 22 6 -0.5779 -7.0902 2.6413 23 6 0.8603 -3.0003 1.3966 24 1 -0.4850 0.8401 -0.0004 25 1 0.4434 -2.5303 -0.7317 26 1 3.1386 -3.5656 0.4200 27 1 2.1860 -4.2537 -0.9634 28 1 -0.0611 -3.7710 3.0648 29 1 -1.5905 -4.1667 4.9297 30 1 -3.3939 -8.7428 5.8108 31 1 -1.9752 -9.4316 3.7173 32 1 -0.2942 -7.9097 1.9977 33 1 -0.1991 -2.8768 1.6215 34 1 1.5067 -2.6237 2.1894 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598031591.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:05 Heat of formation + Delta-G solvation = 85.790064 kcal Electronic energy + Delta-G solvation = -19692.741325 eV Core-core repulsion = 16593.070306 eV Total energy + Delta-G solvation = -3099.671019 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.90209 -41.36715 -39.11379 -37.90642 -34.91839 -34.57857 -32.10366 -30.57918 -29.85568 -27.27586 -26.91812 -24.96694 -24.13186 -22.82818 -22.25026 -20.31517 -19.19589 -18.60044 -18.23626 -17.33814 -17.10700 -17.03415 -16.57970 -16.14330 -15.66794 -15.49975 -15.15541 -14.76881 -14.30139 -14.07635 -13.96974 -13.28403 -13.22182 -12.91477 -12.84190 -12.71580 -12.52925 -12.18929 -12.11590 -11.52102 -11.27020 -11.02558 -10.88779 -10.49056 -10.05028 -9.59909 -8.96612 -8.14314 -6.25268 -0.58525 -0.03012 1.30445 1.45714 1.51679 1.53349 1.59863 1.96826 2.01457 2.47882 2.51213 3.13220 3.15401 3.30277 3.47640 3.62019 3.85935 4.10857 4.25542 4.37493 4.37780 4.44932 4.54688 4.71130 4.75740 4.80932 4.84652 4.97922 4.99209 5.07390 5.29944 5.58509 5.61967 5.83603 5.86041 6.24327 6.74419 6.75376 6.83664 6.99656 7.45060 8.95158 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.030371 B = 0.004225 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.706170 B = 6626.099541 C = 7365.098778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.955 3.045 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.528 4.528 8 H 0.069 0.931 9 C 0.022 3.978 10 C 0.109 3.891 11 N -0.635 5.635 12 C 0.586 3.414 13 O -0.587 6.587 14 C -0.160 4.160 15 C -0.090 4.090 16 C -0.086 4.086 17 C 0.207 3.793 18 N -0.522 5.522 19 C 0.022 3.978 20 C -0.090 4.090 21 N -0.373 5.373 22 C 0.135 3.865 23 C 0.105 3.895 24 H 0.264 0.736 25 H 0.040 0.960 26 H 0.092 0.908 27 H 0.060 0.940 28 H 0.161 0.839 29 H 0.173 0.827 30 H 0.216 0.784 31 H 0.223 0.777 32 H 0.192 0.808 33 H 0.069 0.931 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.639 -11.990 8.239 14.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.781 3.219 4 H -0.199 1.199 5 H -0.216 1.216 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.087 0.913 9 C 0.003 3.997 10 C -0.013 4.013 11 N -0.366 5.366 12 C 0.377 3.623 13 O -0.471 6.471 14 C -0.166 4.166 15 C -0.114 4.114 16 C -0.106 4.106 17 C -0.037 4.037 18 N -0.242 5.242 19 C -0.127 4.127 20 C -0.219 4.219 21 N -0.045 5.045 22 C 0.009 3.991 23 C -0.017 4.017 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.110 0.890 27 H 0.079 0.921 28 H 0.178 0.822 29 H 0.190 0.810 30 H 0.233 0.767 31 H 0.240 0.760 32 H 0.209 0.791 33 H 0.088 0.912 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.042 -12.203 8.608 15.240 hybrid contribution 0.595 0.490 -0.798 1.110 sum -2.447 -11.713 7.810 14.289 Atomic orbital electron populations 1.70042 1.07374 1.27906 1.50167 1.25708 0.95481 1.02381 0.94031 0.85650 0.78332 0.78890 0.79016 1.19853 1.21557 1.19142 1.21174 0.93424 0.90309 1.51693 0.91287 1.20236 0.94687 0.91773 0.93026 1.23317 0.94517 0.91661 0.91829 1.49745 1.42103 1.04717 1.40058 1.17512 0.80766 0.81015 0.82987 1.90715 1.59903 1.41754 1.54724 1.19253 1.03713 0.94197 0.99470 1.21725 0.96515 0.99964 0.93185 1.20401 0.97717 0.93176 0.99309 1.21445 0.99618 0.91269 0.91347 1.70740 1.18180 1.11430 1.23857 1.23222 1.00795 0.91544 0.97133 1.23522 1.03861 0.92203 1.02267 1.43018 1.30280 1.11046 1.20178 1.21763 0.89625 0.98755 0.88912 1.23614 1.00380 0.76448 1.01283 0.92669 0.94214 0.88984 0.92100 0.82202 0.80978 0.76738 0.76025 0.79069 0.91238 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.40 13.26 21.45 0.28 -48.12 16 2 C 0.02 1.22 5.46 84.65 0.46 1.68 16 3 Si 0.96 39.32 29.54 68.60 2.03 41.35 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 7 C -0.53 -25.35 8.82 25.60 0.23 -25.12 16 8 H 0.07 3.18 7.81 -2.91 -0.02 3.16 16 9 C 0.02 0.98 3.79 -11.21 -0.04 0.94 16 10 C 0.11 4.19 8.18 83.17 0.68 4.87 16 11 N -0.63 -23.94 3.67 -862.12 -3.16 -27.10 16 12 C 0.59 21.60 7.99 86.71 0.69 22.29 16 13 O -0.59 -24.20 17.07 -4.01 -0.07 -24.27 16 14 C -0.16 -4.92 5.84 -20.35 -0.12 -5.04 16 15 C -0.09 -2.58 9.10 22.53 0.21 -2.37 16 16 C -0.09 -2.30 10.09 22.39 0.23 -2.08 16 17 C 0.21 5.88 7.81 134.16 1.05 6.93 16 18 N -0.52 -14.67 11.31 -194.14 -2.20 -16.87 16 19 C 0.02 0.45 11.82 83.68 0.99 1.44 16 20 C -0.09 -1.70 11.75 83.14 0.98 -0.73 16 21 N -0.37 -9.43 2.93 -351.04 -1.03 -10.46 16 22 C 0.14 3.57 10.49 83.66 0.88 4.45 16 23 C 0.10 3.99 5.66 83.17 0.47 4.46 16 24 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 25 H 0.04 2.00 8.11 -2.39 -0.02 1.98 16 26 H 0.09 3.29 8.10 -2.39 -0.02 3.27 16 27 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.16 4.55 4.26 -2.91 -0.01 4.54 16 29 H 0.17 3.84 8.06 -2.91 -0.02 3.81 16 30 H 0.22 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.22 2.22 8.06 -2.91 -0.02 2.20 16 32 H 0.19 4.37 7.57 -2.91 -0.02 4.35 16 33 H 0.07 2.64 6.77 -2.39 -0.02 2.62 16 34 H 0.09 3.31 8.08 -2.38 -0.02 3.29 16 Total: -1.00 -62.20 297.23 3.68 -58.53 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 1.13 Total: 15.22 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 6.69 Total: 11.72 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -6.10 Total: -102.54 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.07 Total: -24.27 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -62.20 3.68 -58.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598031591.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.316 kcal (2) G-P(sol) polarization free energy of solvation -62.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds