Wall clock time and date at job start Mon Mar 30 2020 04:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00045 * 2 1 4 4 H 1.48498 * 109.47103 * 240.00145 * 3 2 1 5 5 H 1.48505 * 109.46740 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47293 * 119.99669 * 3 2 1 7 7 C 1.37880 * 120.00317 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99807 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99739 * 359.97438 * 7 2 1 10 10 C 1.53498 * 114.20365 * 180.02562 * 9 7 2 11 11 N 1.47069 * 87.98496 * 139.65557 * 10 9 7 12 12 C 1.34769 * 136.05773 * 152.84400 * 11 10 9 13 13 O 1.21645 * 120.00379 * 358.97823 * 12 11 10 14 14 C 1.47171 * 119.99972 * 178.97959 * 12 11 10 15 15 C 1.38586 * 120.72641 * 352.72700 * 14 12 11 16 16 C 1.38922 * 121.36341 * 179.97438 * 15 14 12 17 17 C 1.35823 * 122.59957 * 0.02569 * 16 15 14 18 18 C 1.40838 * 120.55529 * 359.97438 * 17 16 15 19 19 C 1.38423 * 134.89973 * 180.02562 * 18 17 16 20 20 N 1.33892 * 107.84675 * 179.97438 * 19 18 17 21 21 H 0.97002 * 125.02137 * 179.97438 * 20 19 18 22 22 N 1.39976 * 109.96211 * 0.02562 * 20 19 18 23 23 C 1.31477 * 109.01645 * 0.02562 * 22 20 19 24 24 C 1.47068 * 87.88247 * 333.09888 * 11 10 9 25 25 H 0.97000 * 120.00371 * 0.02562 * 1 2 3 26 26 H 1.09000 * 113.27933 * 46.93327 * 9 7 2 27 27 H 1.09000 * 113.46954 * 24.87145 * 10 9 7 28 28 H 1.09002 * 113.46287 * 254.43591 * 10 9 7 29 29 H 1.07998 * 119.31720 * 359.97418 * 15 14 12 30 30 H 1.08008 * 118.70099 * 179.97438 * 16 15 14 31 31 H 1.08004 * 119.72170 * 179.71837 * 17 16 15 32 32 H 1.07999 * 126.07948 * 359.92937 * 19 18 17 33 33 H 1.09002 * 113.46808 * 141.68091 * 24 11 10 34 34 H 1.08997 * 113.46903 * 272.11674 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.1489 -3.7442 -0.0005 11 7 1.2101 -4.3575 0.9510 12 6 0.8348 -5.6113 1.2724 13 8 1.3164 -6.5604 0.6832 14 6 -0.1578 -5.8324 2.3363 15 6 -0.6047 -4.7789 3.1179 16 6 -1.5415 -4.9724 4.1252 17 6 -2.0729 -6.1904 4.4061 18 6 -1.6860 -7.3273 3.6704 19 6 -2.0224 -8.6698 3.6975 20 7 -1.3196 -9.2884 2.7404 21 1 -1.3642 -10.2368 2.5419 22 7 -0.5101 -8.3645 2.0692 23 6 -0.6950 -7.1728 2.5931 24 6 0.8563 -3.0001 1.3928 25 1 -0.4851 0.8400 -0.0004 26 1 0.4433 -2.5302 -0.7317 27 1 3.1386 -3.5657 0.4200 28 1 2.1852 -4.2531 -0.9638 29 1 -0.2165 -3.7868 2.9402 30 1 -1.8593 -4.1208 4.7086 31 1 -2.7952 -6.2886 5.2031 32 1 -2.7260 -9.1356 4.3715 33 1 -0.2044 -2.8776 1.6120 34 1 1.4980 -2.6214 2.1883 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598033288.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:16 Heat of formation + Delta-G solvation = 84.135003 kcal Electronic energy + Delta-G solvation = -19747.700251 eV Core-core repulsion = 16647.957464 eV Total energy + Delta-G solvation = -3099.742787 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.21702 -41.10987 -38.69920 -37.76446 -34.63724 -33.11575 -32.12694 -30.81329 -29.63577 -27.14433 -26.81804 -25.42748 -23.10688 -22.72890 -21.51041 -19.78789 -19.12854 -18.72808 -18.28350 -17.21619 -16.97289 -16.58933 -16.25104 -15.87560 -15.73962 -15.08751 -14.95297 -14.36632 -14.17062 -13.79621 -13.29777 -13.18460 -13.03779 -12.87296 -12.72768 -12.66564 -12.43051 -12.07636 -11.60605 -11.29696 -11.27385 -11.00229 -10.67452 -10.44245 -9.87313 -9.58059 -8.63063 -8.13440 -6.25284 -0.61479 0.84876 1.16468 1.51865 1.52729 1.60335 1.80365 2.02173 2.05755 2.49251 2.90848 3.15706 3.27194 3.50493 3.83402 4.15392 4.20139 4.24727 4.38040 4.41980 4.47415 4.57119 4.65435 4.72080 4.77287 4.88310 4.97055 5.18774 5.34978 5.41815 5.56052 5.60052 5.82850 5.91078 6.24547 6.30286 6.62828 6.82467 6.89358 7.22489 7.44564 8.96501 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.033507 B = 0.004350 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.447712 B = 6435.146946 C = 7085.054359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.960 3.040 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.067 0.933 9 C 0.025 3.975 10 C 0.105 3.895 11 N -0.645 5.645 12 C 0.567 3.433 13 O -0.596 6.596 14 C -0.174 4.174 15 C -0.023 4.023 16 C -0.195 4.195 17 C 0.021 3.979 18 C -0.252 4.252 19 C 0.141 3.859 20 N -0.422 5.422 21 H 0.460 0.540 22 N -0.348 5.348 23 C 0.111 3.889 24 C 0.109 3.891 25 H 0.266 0.734 26 H 0.037 0.963 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.141 0.859 30 H 0.159 0.841 31 H 0.180 0.820 32 H 0.259 0.741 33 H 0.071 0.929 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.812 -12.741 14.141 20.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.568 4.568 8 H 0.085 0.915 9 C 0.006 3.994 10 C -0.018 4.018 11 N -0.378 5.378 12 C 0.361 3.639 13 O -0.479 6.479 14 C -0.180 4.180 15 C -0.045 4.045 16 C -0.215 4.215 17 C 0.001 3.999 18 C -0.262 4.262 19 C -0.018 4.018 20 N -0.123 5.123 21 H 0.308 0.692 22 N -0.175 5.175 23 C -0.046 4.046 24 C -0.013 4.013 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.159 0.841 30 H 0.176 0.824 31 H 0.197 0.803 32 H 0.275 0.725 33 H 0.089 0.911 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.101 -14.041 12.934 20.738 hybrid contribution 0.288 0.814 -0.202 0.887 sum -7.813 -13.226 12.732 19.952 Atomic orbital electron populations 1.70054 1.07410 1.28003 1.49990 1.25749 0.95568 1.02466 0.93844 0.85580 0.78308 0.78565 0.79006 1.19941 1.21112 1.19062 1.21152 0.93331 0.90292 1.52071 0.91485 1.20179 0.94449 0.91670 0.93098 1.23267 0.94719 0.92131 0.91651 1.49858 1.42511 1.04817 1.40588 1.18184 0.82124 0.80625 0.82962 1.90701 1.59463 1.41621 1.56134 1.19757 1.04499 0.91598 1.02147 1.22132 0.92934 0.97761 0.91692 1.20729 1.00556 0.99705 1.00466 1.20864 0.94791 0.88966 0.95295 1.20155 1.06151 0.96159 1.03776 1.23801 0.95052 0.90974 0.91956 1.46599 1.29344 1.12012 1.24322 0.69243 1.77762 1.18669 0.99453 1.21642 1.21767 0.96145 0.91368 0.95336 1.23482 1.00134 0.76634 1.01027 0.92533 0.94471 0.89586 0.93055 0.84116 0.82369 0.80274 0.72518 0.91137 0.89349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.24 13.26 21.45 0.28 -49.96 16 2 C 0.02 1.26 5.46 84.66 0.46 1.73 16 3 Si 0.96 40.86 29.54 68.60 2.03 42.89 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 7 C -0.53 -27.44 8.83 25.60 0.23 -27.22 16 8 H 0.07 3.35 7.81 -2.91 -0.02 3.32 16 9 C 0.03 1.26 3.77 -11.29 -0.04 1.22 16 10 C 0.10 4.80 8.19 83.18 0.68 5.49 16 11 N -0.64 -29.75 3.68 -863.05 -3.18 -32.93 16 12 C 0.57 27.35 8.00 86.59 0.69 28.05 16 13 O -0.60 -32.78 17.13 -4.17 -0.07 -32.85 16 14 C -0.17 -7.01 6.05 -18.65 -0.11 -7.12 16 15 C -0.02 -0.76 9.13 22.52 0.21 -0.55 16 16 C -0.20 -4.48 9.83 21.87 0.21 -4.27 16 17 C 0.02 0.38 10.02 22.35 0.22 0.60 16 18 C -0.25 -5.83 6.34 -20.25 -0.13 -5.96 16 19 C 0.14 1.88 12.08 84.42 1.02 2.90 16 20 N -0.42 -8.27 7.18 -56.29 -0.40 -8.67 16 21 H 0.46 4.93 8.96 -213.40 -1.91 3.02 16 22 N -0.35 -12.59 12.26 -45.22 -0.55 -13.14 16 23 C 0.11 4.04 7.27 43.75 0.32 4.35 16 24 C 0.11 4.78 5.87 83.09 0.49 5.26 16 25 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 26 H 0.04 2.06 8.11 -2.39 -0.02 2.04 16 27 H 0.09 3.69 8.10 -2.39 -0.02 3.67 16 28 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.14 4.69 4.01 -2.91 -0.01 4.68 16 30 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16 31 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 32 H 0.26 -0.36 8.06 -2.91 -0.02 -0.38 16 33 H 0.07 3.01 6.49 -2.39 -0.02 3.00 16 34 H 0.09 3.65 8.10 -2.39 -0.02 3.63 16 Total: -1.00 -81.83 297.41 1.59 -80.23 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -0.76 Total: 9.95 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 4.25 Total: 4.47 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -3.85 Total: -104.70 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.07 Total: -32.85 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -81.83 1.59 -80.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598033288.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.370 kcal (2) G-P(sol) polarization free energy of solvation -81.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds