Wall clock time and date at job start Mon Mar 30 2020 04:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99944 * 2 1 4 4 H 1.48504 * 109.46903 * 270.00002 * 3 2 1 5 5 H 1.48507 * 109.47288 * 29.99782 * 3 2 1 6 6 H 1.48501 * 109.47288 * 149.99601 * 3 2 1 7 7 C 1.37871 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00004 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.53950 * 113.73877 * 278.73803 * 9 7 2 11 11 N 1.47806 * 86.03454 * 222.08436 * 10 9 7 12 12 C 1.34786 * 134.45632 * 204.64403 * 11 10 9 13 13 O 1.21594 * 119.99808 * 174.50146 * 12 11 10 14 14 C 1.47463 * 119.99780 * 354.50363 * 12 11 10 15 15 C 1.39008 * 120.29627 * 335.36439 * 14 12 11 16 16 C 1.38497 * 120.36507 * 179.97438 * 15 14 12 17 17 C 1.37826 * 120.79279 * 0.02606 * 16 15 14 18 18 C 1.39216 * 120.20052 * 359.97438 * 17 16 15 19 19 N 1.37218 * 133.65263 * 179.97438 * 18 17 16 20 20 H 0.96992 * 125.98261 * 0.02562 * 19 18 17 21 21 N 1.40026 * 108.03176 * 180.02562 * 19 18 17 22 22 C 1.30266 * 109.70649 * 359.97438 * 21 19 18 23 23 C 1.40681 * 119.78464 * 359.72371 * 18 17 16 24 24 C 1.47578 * 91.05350 * 24.55473 * 11 10 9 25 25 H 0.96994 * 119.99988 * 0.02562 * 1 2 3 26 26 H 1.08996 * 112.94409 * 50.33124 * 9 7 2 27 27 H 1.08998 * 113.77248 * 336.35146 * 10 9 7 28 28 H 1.09005 * 113.76321 * 107.75059 * 10 9 7 29 29 H 1.07998 * 119.81623 * 359.97438 * 15 14 12 30 30 H 1.08009 * 119.60320 * 180.02562 * 16 15 14 31 31 H 1.08001 * 119.90220 * 180.02562 * 17 16 15 32 32 H 1.08004 * 125.64789 * 179.97438 * 22 21 19 33 33 H 1.09008 * 113.77132 * 221.15128 * 24 11 10 34 34 H 1.08997 * 113.77242 * 89.75467 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.7552 -2.9285 1.3933 11 7 1.1913 -4.2895 1.0160 12 6 0.8417 -5.5332 1.4003 13 8 1.3137 -6.4998 0.8333 14 6 -0.1130 -5.7216 2.5082 15 6 -0.2686 -4.7352 3.4752 16 6 -1.1652 -4.9104 4.5161 17 6 -1.9171 -6.0614 4.6134 18 6 -1.7839 -7.0676 3.6606 19 7 -2.3749 -8.2941 3.4892 20 1 -3.0469 -8.6885 4.0668 21 7 -1.8379 -8.8764 2.3345 22 6 -0.9613 -8.0721 1.8039 23 6 -0.8826 -6.9040 2.5929 24 6 2.1609 -3.7401 0.0486 25 1 -0.4850 0.8400 -0.0004 26 1 0.4840 -2.5469 -0.7724 27 1 1.3259 -2.4964 2.2153 28 1 -0.3225 -2.8320 1.5249 29 1 0.3129 -3.8271 3.4144 30 1 -1.2766 -4.1357 5.2604 31 1 -2.6124 -6.1828 5.4310 32 1 -0.3915 -8.2654 0.9070 33 1 2.2034 -4.2902 -0.8915 34 1 3.1453 -3.5469 0.4747 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598034027.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:51 Heat of formation + Delta-G solvation = 89.749861 kcal Electronic energy + Delta-G solvation = -19842.121719 eV Core-core repulsion = 16742.622410 eV Total energy + Delta-G solvation = -3099.499309 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.47284 -39.41251 -37.16083 -36.65504 -32.73717 -32.48459 -30.27439 -29.82066 -28.54778 -25.35880 -25.23678 -23.49362 -22.46602 -21.52484 -20.45952 -18.90199 -17.35414 -17.09823 -16.62667 -15.90729 -15.27198 -14.99353 -14.95199 -14.69626 -14.62506 -14.13827 -13.45133 -13.21930 -12.56372 -12.30054 -11.98496 -11.78638 -11.64984 -11.51748 -11.24158 -10.97838 -10.95208 -10.80546 -10.41976 -10.30974 -9.66593 -9.31956 -8.99777 -8.68795 -8.60885 -8.08625 -7.85967 -6.20370 -4.26313 0.58750 1.41652 2.53459 2.66958 3.15122 3.22477 3.30287 3.32280 3.48102 3.98470 4.31397 4.56195 4.72093 4.86310 4.98201 5.09484 5.10969 5.23236 5.58760 5.71554 5.86346 6.03337 6.14359 6.22472 6.29800 6.36876 6.38893 6.39428 6.51687 6.64582 6.72178 6.82613 7.21452 7.52744 7.54272 7.77208 8.13434 8.42139 8.68701 8.77270 9.40871 10.89180 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.031124 B = 0.004482 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.418661 B = 6245.297714 C = 6810.534048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.069 3.931 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.064 0.936 9 C 0.033 3.967 10 C 0.102 3.898 11 N -0.631 5.631 12 C 0.564 3.436 13 O -0.558 6.558 14 C -0.040 4.040 15 C -0.121 4.121 16 C -0.072 4.072 17 C -0.129 4.129 18 C 0.118 3.882 19 N -0.512 5.512 20 H 0.439 0.561 21 N -0.259 5.259 22 C 0.093 3.907 23 C -0.136 4.136 24 C 0.104 3.896 25 H 0.264 0.736 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.141 0.859 30 H 0.137 0.863 31 H 0.128 0.872 32 H 0.200 0.800 33 H 0.063 0.937 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.208 -8.640 9.362 13.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.558 4.558 8 H 0.082 0.918 9 C 0.014 3.986 10 C -0.020 4.020 11 N -0.364 5.364 12 C 0.354 3.646 13 O -0.439 6.439 14 C -0.045 4.045 15 C -0.141 4.141 16 C -0.093 4.093 17 C -0.151 4.151 18 C 0.001 3.999 19 N -0.227 5.227 20 H 0.284 0.716 21 N -0.073 5.073 22 C -0.102 4.102 23 C -0.144 4.144 24 C -0.017 4.017 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.159 0.841 30 H 0.154 0.846 31 H 0.145 0.855 32 H 0.216 0.784 33 H 0.082 0.918 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.774 -10.372 9.000 14.539 hybrid contribution 0.341 1.532 0.577 1.672 sum -4.433 -8.840 9.577 13.767 Atomic orbital electron populations 1.69949 1.06039 1.27148 1.49121 1.25012 0.94844 0.99338 0.94287 0.86554 0.79882 0.83048 0.78316 1.20510 1.21169 1.19701 1.20969 0.93070 0.89639 1.52162 0.91811 1.20513 0.94151 0.91416 0.92518 1.23860 0.99639 0.76292 1.02215 1.50450 1.39867 1.04663 1.41404 1.17844 0.81769 0.82359 0.82634 1.90695 1.57352 1.39379 1.56476 1.19570 0.96116 0.92957 0.95904 1.21495 0.99364 0.98822 0.94389 1.20953 0.94421 0.96324 0.97611 1.20155 1.03122 0.92978 0.98890 1.18795 0.95677 0.88479 0.96932 1.46033 1.38781 1.13855 1.24072 0.71609 1.76754 1.11964 1.21629 0.96993 1.24111 0.95639 0.90372 1.00094 1.18695 1.01413 0.96620 0.97711 1.23531 0.93747 0.93674 0.90773 0.92619 0.91753 0.90413 0.91317 0.84107 0.84559 0.85457 0.78356 0.91810 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.41 13.29 55.43 0.74 -22.67 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 19.53 29.54 -169.99 -5.02 14.51 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.52 -12.79 8.77 -34.44 -0.30 -13.10 16 8 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 9 C 0.03 0.75 3.60 -90.84 -0.33 0.42 16 10 C 0.10 2.04 5.85 -2.84 -0.02 2.02 16 11 N -0.63 -12.57 3.58 -179.50 -0.64 -13.21 16 12 C 0.56 11.20 7.81 -12.50 -0.10 11.10 16 13 O -0.56 -12.17 16.20 5.28 0.09 -12.09 16 14 C -0.04 -0.68 5.84 -104.68 -0.61 -1.29 16 15 C -0.12 -1.76 8.82 -39.20 -0.35 -2.11 16 16 C -0.07 -0.84 9.99 -39.64 -0.40 -1.24 16 17 C -0.13 -1.45 10.06 -39.37 -0.40 -1.84 16 18 C 0.12 1.61 7.32 -84.17 -0.62 0.99 16 19 N -0.51 -6.31 7.45 32.35 0.24 -6.07 16 20 H 0.44 3.73 8.96 -182.66 -1.64 2.09 16 21 N -0.26 -3.82 12.58 30.81 0.39 -3.44 16 22 C 0.09 1.48 11.32 -17.10 -0.19 1.29 16 23 C -0.14 -2.22 5.96 -106.68 -0.64 -2.85 16 24 C 0.10 2.10 8.40 -2.97 -0.02 2.07 16 25 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 26 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 27 H 0.08 1.50 7.71 -51.93 -0.40 1.10 16 28 H 0.07 1.39 7.86 -51.93 -0.41 0.98 16 29 H 0.14 2.04 5.52 -52.49 -0.29 1.75 16 30 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 31 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.20 3.05 7.29 -52.48 -0.38 2.67 16 33 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 34 H 0.08 1.47 8.09 -51.93 -0.42 1.05 16 LS Contribution 297.10 15.07 4.48 4.48 Total: -1.00 -29.41 297.10 -8.57 -37.98 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -4.77 Total: 3.41 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -4.06 Total: -2.89 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.72 Total: -45.39 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.41 -8.57 -37.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598034027.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.728 kcal (2) G-P(sol) polarization free energy of solvation -29.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds