Wall clock time and date at job start Mon Mar 30 2020 04:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99944 * 2 1 4 4 H 1.48504 * 109.46903 * 270.00002 * 3 2 1 5 5 H 1.48507 * 109.47288 * 29.99782 * 3 2 1 6 6 H 1.48501 * 109.47288 * 149.99601 * 3 2 1 7 7 C 1.37871 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00004 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.53950 * 113.73877 * 278.73803 * 9 7 2 11 11 N 1.47806 * 86.03454 * 222.08436 * 10 9 7 12 12 C 1.34786 * 134.45632 * 204.64403 * 11 10 9 13 13 O 1.21594 * 119.99808 * 174.50146 * 12 11 10 14 14 C 1.47463 * 119.99780 * 354.50363 * 12 11 10 15 15 C 1.39008 * 120.29627 * 335.36439 * 14 12 11 16 16 C 1.38497 * 120.36507 * 179.97438 * 15 14 12 17 17 C 1.37826 * 120.79279 * 0.02606 * 16 15 14 18 18 C 1.39216 * 120.20052 * 359.97438 * 17 16 15 19 19 N 1.37218 * 133.65263 * 179.97438 * 18 17 16 20 20 H 0.96992 * 125.98261 * 0.02562 * 19 18 17 21 21 N 1.40026 * 108.03176 * 180.02562 * 19 18 17 22 22 C 1.30266 * 109.70649 * 359.97438 * 21 19 18 23 23 C 1.40681 * 119.78464 * 359.72371 * 18 17 16 24 24 C 1.47578 * 91.05350 * 24.55473 * 11 10 9 25 25 H 0.96994 * 119.99988 * 0.02562 * 1 2 3 26 26 H 1.08996 * 112.94409 * 50.33124 * 9 7 2 27 27 H 1.08998 * 113.77248 * 336.35146 * 10 9 7 28 28 H 1.09005 * 113.76321 * 107.75059 * 10 9 7 29 29 H 1.07998 * 119.81623 * 359.97438 * 15 14 12 30 30 H 1.08009 * 119.60320 * 180.02562 * 16 15 14 31 31 H 1.08001 * 119.90220 * 180.02562 * 17 16 15 32 32 H 1.08004 * 125.64789 * 179.97438 * 22 21 19 33 33 H 1.09008 * 113.77132 * 221.15128 * 24 11 10 34 34 H 1.08997 * 113.77242 * 89.75467 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.7552 -2.9285 1.3933 11 7 1.1913 -4.2895 1.0160 12 6 0.8417 -5.5332 1.4003 13 8 1.3137 -6.4998 0.8333 14 6 -0.1130 -5.7216 2.5082 15 6 -0.2686 -4.7352 3.4752 16 6 -1.1652 -4.9104 4.5161 17 6 -1.9171 -6.0614 4.6134 18 6 -1.7839 -7.0676 3.6606 19 7 -2.3749 -8.2941 3.4892 20 1 -3.0469 -8.6885 4.0668 21 7 -1.8379 -8.8764 2.3345 22 6 -0.9613 -8.0721 1.8039 23 6 -0.8826 -6.9040 2.5929 24 6 2.1609 -3.7401 0.0486 25 1 -0.4850 0.8400 -0.0004 26 1 0.4840 -2.5469 -0.7724 27 1 1.3259 -2.4964 2.2153 28 1 -0.3225 -2.8320 1.5249 29 1 0.3129 -3.8271 3.4144 30 1 -1.2766 -4.1357 5.2604 31 1 -2.6124 -6.1828 5.4310 32 1 -0.3915 -8.2654 0.9070 33 1 2.2034 -4.2902 -0.8915 34 1 3.1453 -3.5469 0.4747 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598034027.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:50 Heat of formation + Delta-G solvation = 71.215783 kcal Electronic energy + Delta-G solvation = -19842.925417 eV Core-core repulsion = 16742.622410 eV Total energy + Delta-G solvation = -3100.303007 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.57715 -40.96582 -38.66572 -37.87749 -34.60159 -33.63499 -31.61033 -30.92200 -30.00077 -27.08945 -26.88125 -24.76127 -23.54005 -22.69920 -22.01457 -20.35269 -18.85570 -18.51678 -18.06344 -17.27477 -16.73974 -16.40791 -16.28655 -15.95849 -15.87698 -15.53502 -14.90309 -14.51006 -14.14596 -13.95806 -13.37927 -13.17635 -12.88333 -12.82844 -12.77452 -12.65367 -12.51173 -12.16684 -12.05817 -11.44726 -11.33114 -11.09789 -10.71379 -10.48936 -9.76965 -9.54190 -9.08736 -8.12366 -6.23557 -0.53670 0.35490 1.35611 1.50405 1.53340 1.61960 1.70643 1.82904 1.95608 2.49650 2.78988 3.18845 3.34327 3.61024 3.81501 3.91371 4.00572 4.24593 4.32877 4.45797 4.47309 4.62709 4.69500 4.70259 4.85076 4.86509 5.00419 5.11699 5.22006 5.34187 5.36884 5.63656 5.71423 5.85356 6.25724 6.27689 6.51441 6.83199 6.85276 7.13169 7.46558 8.97383 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.031124 B = 0.004482 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.418661 B = 6245.297714 C = 6810.534048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.956 3.044 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.067 0.933 9 C 0.021 3.979 10 C 0.122 3.878 11 N -0.634 5.634 12 C 0.561 3.439 13 O -0.587 6.587 14 C -0.076 4.076 15 C -0.116 4.116 16 C -0.071 4.071 17 C -0.104 4.104 18 C 0.113 3.887 19 N -0.493 5.493 20 H 0.457 0.543 21 N -0.265 5.265 22 C 0.071 3.929 23 C -0.162 4.162 24 C 0.109 3.891 25 H 0.264 0.736 26 H 0.032 0.968 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.139 0.861 30 H 0.177 0.823 31 H 0.174 0.826 32 H 0.190 0.810 33 H 0.062 0.938 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.945 -8.132 12.044 15.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.176 4.176 3 Si 0.782 3.218 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.567 4.567 8 H 0.085 0.915 9 C 0.001 3.999 10 C 0.000 4.000 11 N -0.367 5.367 12 C 0.352 3.648 13 O -0.471 6.471 14 C -0.082 4.082 15 C -0.136 4.136 16 C -0.091 4.091 17 C -0.125 4.125 18 C -0.004 4.004 19 N -0.211 5.211 20 H 0.306 0.694 21 N -0.080 5.080 22 C -0.123 4.123 23 C -0.171 4.171 24 C -0.012 4.012 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.108 0.892 28 H 0.084 0.916 29 H 0.156 0.844 30 H 0.194 0.806 31 H 0.192 0.808 32 H 0.207 0.793 33 H 0.081 0.919 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.516 -9.881 11.695 16.274 hybrid contribution 0.504 1.314 -0.214 1.424 sum -5.012 -8.567 11.480 15.176 Atomic orbital electron populations 1.70056 1.07345 1.27800 1.50352 1.25702 0.95498 1.02320 0.94101 0.85589 0.78926 0.79277 0.78040 1.20712 1.21054 1.18804 1.21258 0.93377 0.90485 1.51618 0.91495 1.20428 0.94142 0.92007 0.93292 1.23593 0.99460 0.76128 1.00810 1.50408 1.39901 1.04884 1.41460 1.18372 0.81789 0.81584 0.83008 1.90660 1.58537 1.40046 1.57828 1.19397 0.97582 0.94838 0.96403 1.21658 0.99582 0.97816 0.94524 1.21386 0.93037 0.97497 0.97193 1.20705 1.02185 0.91187 0.98466 1.19066 0.95232 0.89284 0.96853 1.46020 1.38426 1.13372 1.23311 0.69402 1.76674 1.11736 1.21751 0.97866 1.24026 0.96603 0.91117 1.00558 1.18888 1.02588 0.96520 0.99102 1.23438 0.94042 0.92522 0.91231 0.92671 0.94958 0.89217 0.91650 0.84364 0.80574 0.80822 0.79349 0.91934 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.84 13.29 21.45 0.28 -48.55 16 2 C 0.02 1.21 5.46 84.65 0.46 1.67 16 3 Si 0.96 39.71 29.54 68.60 2.03 41.74 16 4 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.53 -26.08 8.77 25.60 0.22 -25.86 16 8 H 0.07 3.19 7.81 -2.91 -0.02 3.17 16 9 C 0.02 0.95 3.60 -10.88 -0.04 0.91 16 10 C 0.12 4.91 5.85 86.44 0.51 5.42 16 11 N -0.63 -25.74 3.58 -840.06 -3.01 -28.74 16 12 C 0.56 22.89 7.81 86.67 0.68 23.57 16 13 O -0.59 -26.75 16.20 -4.01 -0.06 -26.81 16 14 C -0.08 -2.62 5.84 -19.90 -0.12 -2.73 16 15 C -0.12 -3.18 8.82 22.52 0.20 -2.99 16 16 C -0.07 -1.35 9.99 22.23 0.22 -1.13 16 17 C -0.10 -1.84 10.06 22.41 0.23 -1.62 16 18 C 0.11 2.80 7.32 39.13 0.29 3.08 16 19 N -0.49 -11.00 7.45 -51.56 -0.38 -11.39 16 20 H 0.46 6.29 8.96 -213.38 -1.91 4.38 16 21 N -0.26 -7.68 12.58 -56.44 -0.71 -8.39 16 22 C 0.07 2.33 11.32 85.65 0.97 3.30 16 23 C -0.16 -5.26 5.96 -21.20 -0.13 -5.38 16 24 C 0.11 4.49 8.40 86.49 0.73 5.22 16 25 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 26 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.09 3.39 7.71 -2.39 -0.02 3.37 16 28 H 0.07 2.66 7.86 -2.38 -0.02 2.64 16 29 H 0.14 3.80 5.52 -2.91 -0.02 3.78 16 30 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 31 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 32 H 0.19 6.27 7.29 -2.91 -0.02 6.25 16 33 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 34 H 0.09 3.42 8.09 -2.39 -0.02 3.40 16 Total: -1.00 -64.74 297.10 1.60 -63.14 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -0.76 Total: 15.55 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 4.22 Total: 3.45 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -3.81 Total: -97.07 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.06 Total: -26.81 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -64.74 1.60 -63.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598034027.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.359 kcal (2) G-P(sol) polarization free energy of solvation -64.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds