Wall clock time and date at job start Mon Mar 30 2020 04:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99719 * 2 1 4 4 H 1.48498 * 109.46931 * 269.99365 * 3 2 1 5 5 H 1.48496 * 109.47476 * 29.99997 * 3 2 1 6 6 H 1.48504 * 109.46989 * 149.99790 * 3 2 1 7 7 C 1.37881 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99568 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.53947 * 113.73728 * 179.97438 * 9 7 2 11 11 N 1.47584 * 86.11565 * 137.95278 * 10 9 7 12 12 C 1.34776 * 134.49098 * 155.35611 * 11 10 9 13 13 O 1.21668 * 120.00279 * 0.02562 * 12 11 10 14 14 C 1.46924 * 119.99988 * 179.97438 * 12 11 10 15 15 C 1.36360 * 126.82631 * 0.02562 * 14 12 11 16 16 N 1.35576 * 109.74896 * 179.97438 * 15 14 12 17 17 H 0.97001 * 124.72122 * 179.97438 * 16 15 14 18 18 C 1.37696 * 110.56105 * 0.02562 * 16 15 14 19 19 N 1.32665 * 132.94287 * 180.02562 * 18 16 15 20 20 C 1.31607 * 121.69037 * 179.97438 * 19 18 16 21 21 C 1.38582 * 121.54030 * 0.02562 * 20 19 18 22 22 C 1.38340 * 119.33181 * 359.97438 * 21 20 19 23 23 C 1.39359 * 118.04689 * 359.69784 * 22 21 20 24 24 C 1.47576 * 91.01498 * 335.35788 * 11 10 9 25 25 H 0.97003 * 120.00094 * 0.02562 * 1 2 3 26 26 H 1.08999 * 113.01745 * 48.34091 * 9 7 2 27 27 H 1.09001 * 113.76955 * 252.25313 * 10 9 7 28 28 H 1.08997 * 113.77064 * 23.65389 * 10 9 7 29 29 H 1.08000 * 125.12295 * 0.02562 * 15 14 12 30 30 H 1.08008 * 119.23289 * 180.02562 * 20 19 18 31 31 H 1.08007 * 120.33901 * 179.97438 * 21 20 19 32 32 H 1.07994 * 120.97587 * 180.02562 * 22 21 20 33 33 H 1.09003 * 113.77250 * 270.33779 * 24 11 10 34 34 H 1.09001 * 113.87174 * 138.94936 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.1615 -3.7405 0.0005 11 7 1.2207 -4.3066 0.9867 12 6 0.8823 -5.5567 1.3598 13 8 1.4116 -6.5145 0.8281 14 6 -0.1249 -5.7628 2.4094 15 6 -0.8012 -4.7969 3.0942 16 7 -1.6478 -5.3729 3.9828 17 1 -2.2339 -4.8859 4.5830 18 6 -1.5590 -6.7453 3.9156 19 7 -2.1723 -7.7237 4.5687 20 6 -1.9119 -8.9898 4.3209 21 6 -0.9822 -9.3649 3.3641 22 6 -0.3113 -8.3874 2.6512 23 6 -0.6095 -7.0543 2.9269 24 6 0.7993 -2.9541 1.4002 25 1 -0.4850 0.8401 -0.0004 26 1 0.4607 -2.5350 -0.7493 27 1 2.1762 -4.2746 -0.9495 28 1 3.1581 -3.5543 0.4007 29 1 -0.6811 -3.7333 2.9499 30 1 -2.4349 -9.7544 4.8763 31 1 -0.7833 -10.4098 3.1768 32 1 0.4181 -8.6497 1.8993 33 1 1.3957 -2.5368 2.2115 34 1 -0.2735 -2.8583 1.5682 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598035841.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:51 Heat of formation + Delta-G solvation = 72.760481 kcal Electronic energy + Delta-G solvation = -19692.453980 eV Core-core repulsion = 16592.217956 eV Total energy + Delta-G solvation = -3100.236024 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.62405 -39.21774 -37.80991 -36.79795 -32.87078 -32.72003 -30.50348 -29.83018 -28.39393 -25.34698 -25.24821 -23.68720 -22.48525 -22.38594 -19.84083 -18.73235 -17.73703 -16.90607 -16.74981 -16.00348 -15.75126 -15.24901 -14.78327 -14.75132 -14.47815 -14.34197 -13.38607 -13.11566 -12.89494 -12.45915 -12.33482 -12.20143 -11.92450 -11.65041 -11.28976 -10.99632 -10.82160 -10.42791 -10.32821 -9.78226 -9.47978 -9.31342 -8.96885 -8.63886 -8.55782 -8.15762 -7.78966 -6.23661 -4.29045 0.93215 1.30290 2.15188 2.67218 3.20501 3.28384 3.30771 3.54692 3.73147 4.04079 4.29481 4.44811 4.69679 4.77907 4.95589 5.06801 5.16719 5.29017 5.46844 5.50822 5.84605 5.99562 6.16688 6.23438 6.25977 6.36394 6.38101 6.38711 6.50230 6.59385 6.81765 6.85573 7.16591 7.50914 7.74456 7.93514 8.11711 8.50034 8.75055 8.82747 9.38213 10.85873 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.036809 B = 0.004141 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.508854 B = 6759.632638 C = 7372.923792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.064 0.936 9 C 0.035 3.965 10 C 0.106 3.894 11 N -0.637 5.637 12 C 0.598 3.402 13 O -0.567 6.567 14 C -0.206 4.206 15 C 0.114 3.886 16 N -0.568 5.568 17 H 0.423 0.577 18 C 0.274 3.726 19 N -0.499 5.499 20 C 0.130 3.870 21 C -0.202 4.202 22 C -0.018 4.018 23 C -0.109 4.109 24 C 0.095 3.905 25 H 0.264 0.736 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.196 0.804 30 H 0.160 0.840 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.078 0.922 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.860 -10.567 8.146 13.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.557 4.557 8 H 0.082 0.918 9 C 0.015 3.985 10 C -0.016 4.016 11 N -0.370 5.370 12 C 0.389 3.611 13 O -0.448 6.448 14 C -0.217 4.217 15 C -0.017 4.017 16 N -0.173 5.173 17 H 0.261 0.739 18 C 0.042 3.958 19 N -0.212 5.212 20 C -0.035 4.035 21 C -0.224 4.224 22 C -0.044 4.044 23 C -0.116 4.116 24 C -0.027 4.027 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.213 0.787 30 H 0.177 0.823 31 H 0.155 0.845 32 H 0.162 0.838 33 H 0.096 0.904 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.475 -10.775 8.623 14.508 hybrid contribution 0.624 1.025 -0.178 1.213 sum -3.850 -9.750 8.445 13.461 Atomic orbital electron populations 1.69942 1.06049 1.27144 1.49293 1.25016 0.94862 0.99365 0.94257 0.86546 0.79894 0.82983 0.78343 1.20481 1.21183 1.19696 1.20989 0.93119 0.89659 1.51934 0.91807 1.20504 0.94465 0.91405 0.92084 1.23488 0.94279 0.93299 0.90511 1.50247 1.42214 1.04281 1.40259 1.16849 0.81287 0.81938 0.81021 1.90694 1.56695 1.40341 1.57078 1.20111 1.05569 0.91409 1.04576 1.22881 0.89919 0.99579 0.89355 1.41381 1.37235 1.03605 1.35116 0.73900 1.18375 0.96416 0.85096 0.95879 1.66460 1.27131 0.99771 1.27804 1.22397 0.95152 0.90643 0.95318 1.21921 1.00265 1.00430 0.99757 1.21160 0.96420 0.90134 0.96683 1.19488 0.99491 0.93650 0.98953 1.23858 0.98849 0.77351 1.02649 0.92640 0.91572 0.91914 0.90729 0.78710 0.82308 0.84488 0.83839 0.90397 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.11 13.27 55.43 0.74 -22.38 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 19.45 29.54 -169.99 -5.02 14.43 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.52 -12.69 8.77 -34.44 -0.30 -13.00 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.03 0.78 3.62 -90.85 -0.33 0.45 16 10 C 0.11 2.15 8.39 -2.97 -0.02 2.13 16 11 N -0.64 -12.75 3.61 -179.88 -0.65 -13.40 16 12 C 0.60 12.22 8.03 -12.74 -0.10 12.12 16 13 O -0.57 -12.97 16.98 5.22 0.09 -12.88 16 14 C -0.21 -3.61 6.27 -103.36 -0.65 -4.26 16 15 C 0.11 1.63 10.97 -16.57 -0.18 1.45 16 16 N -0.57 -7.24 5.97 -11.97 -0.07 -7.31 16 17 H 0.42 3.95 8.96 -40.82 -0.37 3.58 16 18 C 0.27 4.13 8.41 -155.53 -1.31 2.82 16 19 N -0.50 -7.01 10.39 -12.29 -0.13 -7.14 16 20 C 0.13 1.49 11.14 -17.52 -0.20 1.30 16 21 C -0.20 -2.33 10.10 -39.42 -0.40 -2.73 16 22 C -0.02 -0.26 9.97 -39.13 -0.39 -0.65 16 23 C -0.11 -1.81 6.28 -104.93 -0.66 -2.47 16 24 C 0.10 1.86 6.71 -2.98 -0.02 1.84 16 25 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 26 H 0.07 1.63 8.13 -51.93 -0.42 1.20 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.07 1.46 8.09 -51.93 -0.42 1.04 16 29 H 0.20 2.50 5.00 -52.49 -0.26 2.23 16 30 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 31 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 32 H 0.14 2.16 7.55 -52.49 -0.40 1.77 16 33 H 0.08 1.48 8.09 -51.93 -0.42 1.06 16 34 H 0.06 1.18 6.27 -51.93 -0.33 0.86 16 LS Contribution 297.69 15.07 4.49 4.49 Total: -1.00 -30.47 297.69 -8.64 -39.11 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -3.43 Total: 4.47 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -4.66 Total: 0.61 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.11 Total: -50.23 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.09 Total: -12.88 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.47 -8.64 -39.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598035841.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.869 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds