Wall clock time and date at job start Mon Mar 30 2020 04:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99719 * 2 1 4 4 H 1.48498 * 109.46931 * 269.99365 * 3 2 1 5 5 H 1.48496 * 109.47476 * 29.99997 * 3 2 1 6 6 H 1.48504 * 109.46989 * 149.99790 * 3 2 1 7 7 C 1.37881 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99568 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.53947 * 113.73728 * 179.97438 * 9 7 2 11 11 N 1.47584 * 86.11565 * 137.95278 * 10 9 7 12 12 C 1.34776 * 134.49098 * 155.35611 * 11 10 9 13 13 O 1.21668 * 120.00279 * 0.02562 * 12 11 10 14 14 C 1.46924 * 119.99988 * 179.97438 * 12 11 10 15 15 C 1.36360 * 126.82631 * 0.02562 * 14 12 11 16 16 N 1.35576 * 109.74896 * 179.97438 * 15 14 12 17 17 H 0.97001 * 124.72122 * 179.97438 * 16 15 14 18 18 C 1.37696 * 110.56105 * 0.02562 * 16 15 14 19 19 N 1.32665 * 132.94287 * 180.02562 * 18 16 15 20 20 C 1.31607 * 121.69037 * 179.97438 * 19 18 16 21 21 C 1.38582 * 121.54030 * 0.02562 * 20 19 18 22 22 C 1.38340 * 119.33181 * 359.97438 * 21 20 19 23 23 C 1.39359 * 118.04689 * 359.69784 * 22 21 20 24 24 C 1.47576 * 91.01498 * 335.35788 * 11 10 9 25 25 H 0.97003 * 120.00094 * 0.02562 * 1 2 3 26 26 H 1.08999 * 113.01745 * 48.34091 * 9 7 2 27 27 H 1.09001 * 113.76955 * 252.25313 * 10 9 7 28 28 H 1.08997 * 113.77064 * 23.65389 * 10 9 7 29 29 H 1.08000 * 125.12295 * 0.02562 * 15 14 12 30 30 H 1.08008 * 119.23289 * 180.02562 * 20 19 18 31 31 H 1.08007 * 120.33901 * 179.97438 * 21 20 19 32 32 H 1.07994 * 120.97587 * 180.02562 * 22 21 20 33 33 H 1.09003 * 113.77250 * 270.33779 * 24 11 10 34 34 H 1.09001 * 113.87174 * 138.94936 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.1615 -3.7405 0.0005 11 7 1.2207 -4.3066 0.9867 12 6 0.8823 -5.5567 1.3598 13 8 1.4116 -6.5145 0.8281 14 6 -0.1249 -5.7628 2.4094 15 6 -0.8012 -4.7969 3.0942 16 7 -1.6478 -5.3729 3.9828 17 1 -2.2339 -4.8859 4.5830 18 6 -1.5590 -6.7453 3.9156 19 7 -2.1723 -7.7237 4.5687 20 6 -1.9119 -8.9898 4.3209 21 6 -0.9822 -9.3649 3.3641 22 6 -0.3113 -8.3874 2.6512 23 6 -0.6095 -7.0543 2.9269 24 6 0.7993 -2.9541 1.4002 25 1 -0.4850 0.8401 -0.0004 26 1 0.4607 -2.5350 -0.7493 27 1 2.1762 -4.2746 -0.9495 28 1 3.1581 -3.5543 0.4007 29 1 -0.6811 -3.7333 2.9499 30 1 -2.4349 -9.7544 4.8763 31 1 -0.7833 -10.4098 3.1768 32 1 0.4181 -8.6497 1.8993 33 1 1.3957 -2.5368 2.2115 34 1 -0.2735 -2.8583 1.5682 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598035841.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:50 Heat of formation + Delta-G solvation = 53.927649 kcal Electronic energy + Delta-G solvation = -19693.270633 eV Core-core repulsion = 16592.217956 eV Total energy + Delta-G solvation = -3101.052677 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.73432 -40.79355 -38.88116 -38.44223 -34.60678 -33.95433 -31.83894 -30.97959 -29.85029 -27.02713 -26.92509 -24.76735 -23.86755 -23.48860 -21.46831 -19.98929 -19.12010 -18.60346 -18.07149 -17.11207 -17.05330 -16.64685 -16.32323 -16.18688 -15.94443 -15.56683 -14.88074 -14.35729 -14.20278 -13.93100 -13.76861 -13.40385 -13.27190 -13.08403 -13.05323 -12.73663 -12.51308 -12.16703 -11.46792 -11.45540 -11.09543 -10.84262 -10.54664 -10.38191 -9.63822 -9.54794 -9.16018 -8.13853 -6.24060 -0.17202 0.27259 0.91002 1.48968 1.52457 1.60522 1.63196 2.00745 2.37215 2.49332 2.88839 3.17284 3.45454 3.50518 3.66210 3.98972 4.06720 4.15187 4.28725 4.38547 4.48307 4.52652 4.63633 4.71192 4.84223 4.86962 4.98258 5.09706 5.22347 5.31497 5.40824 5.63959 5.80220 5.84869 6.21197 6.25896 6.83589 6.90952 6.92702 7.24693 7.45807 8.95637 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.036809 B = 0.004141 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.508854 B = 6759.632638 C = 7372.923792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.954 3.046 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.529 4.529 8 H 0.064 0.936 9 C 0.024 3.976 10 C 0.109 3.891 11 N -0.639 5.639 12 C 0.595 3.405 13 O -0.602 6.602 14 C -0.249 4.249 15 C 0.142 3.858 16 N -0.551 5.551 17 H 0.440 0.560 18 C 0.261 3.739 19 N -0.508 5.508 20 C 0.134 3.866 21 C -0.182 4.182 22 C -0.045 4.045 23 C -0.137 4.137 24 C 0.111 3.889 25 H 0.264 0.736 26 H 0.038 0.962 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.211 0.789 30 H 0.205 0.795 31 H 0.175 0.825 32 H 0.129 0.871 33 H 0.088 0.912 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.568 -11.124 9.965 15.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.175 4.175 3 Si 0.780 3.220 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.567 4.567 8 H 0.083 0.917 9 C 0.004 3.996 10 C -0.013 4.013 11 N -0.371 5.371 12 C 0.388 3.612 13 O -0.486 6.486 14 C -0.260 4.260 15 C 0.008 3.992 16 N -0.157 5.157 17 H 0.282 0.718 18 C 0.029 3.971 19 N -0.222 5.222 20 C -0.031 4.031 21 C -0.203 4.203 22 C -0.072 4.072 23 C -0.144 4.144 24 C -0.011 4.011 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.227 0.773 30 H 0.221 0.779 31 H 0.192 0.808 32 H 0.147 0.853 33 H 0.106 0.894 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.199 -11.327 10.471 16.278 hybrid contribution 0.802 1.063 -0.734 1.520 sum -4.397 -10.264 9.737 14.815 Atomic orbital electron populations 1.70034 1.07187 1.27775 1.50369 1.25665 0.95533 1.02163 0.94125 0.85616 0.78909 0.79439 0.78033 1.20704 1.21031 1.19039 1.21258 0.93334 0.90597 1.51536 0.91746 1.20404 0.94273 0.91662 0.93212 1.23414 0.94558 0.92409 0.90916 1.50218 1.42152 1.04535 1.40200 1.17280 0.81432 0.81288 0.81220 1.90654 1.58170 1.41203 1.58576 1.19939 1.07044 0.93222 1.05784 1.22928 0.88573 0.99555 0.88119 1.41327 1.36629 1.03172 1.34555 0.71836 1.18517 0.96593 0.85962 0.96008 1.66603 1.27197 1.00525 1.27833 1.23224 0.94456 0.90624 0.94782 1.22334 0.98451 1.01517 0.97980 1.21283 0.97527 0.90613 0.97765 1.19749 1.00591 0.94063 1.00012 1.23681 0.99735 0.76643 1.01015 0.92653 0.94430 0.92128 0.89771 0.77258 0.77886 0.80775 0.85302 0.89416 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.73 13.27 21.45 0.28 -47.45 16 2 C 0.03 1.27 5.46 84.66 0.46 1.73 16 3 Si 0.95 39.54 29.54 68.60 2.03 41.56 16 4 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 6 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.53 -25.88 8.77 25.60 0.22 -25.65 16 8 H 0.06 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.02 1.08 3.62 -10.88 -0.04 1.04 16 10 C 0.11 4.51 8.39 86.48 0.73 5.23 16 11 N -0.64 -25.88 3.61 -841.26 -3.03 -28.92 16 12 C 0.59 24.90 8.03 86.52 0.69 25.60 16 13 O -0.60 -28.61 16.98 -4.25 -0.07 -28.68 16 14 C -0.25 -8.80 6.27 -19.05 -0.12 -8.92 16 15 C 0.14 3.92 10.97 83.68 0.92 4.84 16 16 N -0.55 -13.11 5.97 -191.79 -1.15 -14.26 16 17 H 0.44 7.21 8.96 -92.71 -0.83 6.38 16 18 C 0.26 7.47 8.41 133.76 1.13 8.60 16 19 N -0.51 -13.00 10.39 -192.79 -2.00 -15.00 16 20 C 0.13 2.61 11.14 84.81 0.95 3.56 16 21 C -0.18 -3.71 10.10 22.38 0.23 -3.48 16 22 C -0.05 -1.33 9.97 22.56 0.23 -1.10 16 23 C -0.14 -4.55 6.28 -20.06 -0.13 -4.67 16 24 C 0.11 4.30 6.71 86.48 0.58 4.88 16 25 H 0.26 13.17 8.31 -92.71 -0.77 12.40 16 26 H 0.04 1.91 8.13 -2.39 -0.02 1.89 16 27 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.08 3.30 8.09 -2.39 -0.02 3.28 16 29 H 0.21 5.03 5.00 -2.91 -0.01 5.02 16 30 H 0.20 2.05 8.06 -2.91 -0.02 2.03 16 31 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.13 4.06 7.55 -2.91 -0.02 4.04 16 33 H 0.09 3.24 8.09 -2.39 -0.02 3.22 16 34 H 0.08 2.75 6.27 -2.39 -0.01 2.74 16 Total: -1.00 -66.54 297.69 2.22 -64.32 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.32 Total: 16.79 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 5.84 Total: 11.64 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -5.90 Total: -105.62 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.07 Total: -28.68 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.56 kcal Total: -66.54 2.22 -64.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598035841.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.245 kcal (2) G-P(sol) polarization free energy of solvation -66.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds